Wall clock time and date at job start Tue Mar 31 2020 19:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47083 * 2 1 4 4 C 1.50697 * 109.47606 * 120.00216 * 2 1 3 5 5 C 1.35317 * 126.66784 * 120.31505 * 4 2 1 6 6 C 1.42274 * 103.92188 * 180.08379 * 5 4 2 7 7 C 1.48320 * 126.93933 * 179.89111 * 6 5 4 8 8 O 1.21496 * 120.00304 * 359.70801 * 7 6 5 9 9 N 1.34779 * 120.00489 * 179.71064 * 7 6 5 10 10 C 1.46491 * 120.00617 * 179.97438 * 9 7 6 11 11 H 1.09007 * 109.47190 * 324.99971 * 10 9 7 12 12 C 1.52999 * 109.47576 * 84.99765 * 10 9 7 13 13 C 1.53000 * 109.47358 * 205.00299 * 10 9 7 14 14 H 1.08999 * 109.49739 * 299.93030 * 13 10 9 15 15 C 1.53042 * 109.52292 * 179.85175 * 13 10 9 16 16 C 1.53046 * 109.53636 * 178.66180 * 15 13 10 17 17 C 1.52762 * 109.37765 * 61.24308 * 16 15 13 18 18 N 1.46926 * 109.01244 * 305.58424 * 17 16 15 19 19 C 1.36935 * 120.63260 * 233.59040 * 18 17 16 20 20 H 1.07998 * 119.99964 * 152.10930 * 19 18 17 21 21 C 1.38818 * 119.99962 * 332.10221 * 19 18 17 22 22 N 1.31621 * 119.99780 * 335.26864 * 21 19 18 23 23 Si 1.86796 * 119.99944 * 154.99519 * 21 19 18 24 24 H 1.48508 * 109.47191 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47528 * 119.99834 * 23 21 19 26 26 H 1.48507 * 109.46927 * 240.00155 * 23 21 19 27 27 C 1.46923 * 118.73306 * 53.31086 * 18 17 16 28 28 N 1.30987 * 106.11869 * 359.62974 * 6 5 4 29 29 O 1.20906 * 111.44674 * 0.24140 * 28 6 5 30 30 H 1.08995 * 109.47129 * 60.00127 * 1 2 3 31 31 H 1.08997 * 109.46965 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47037 * 299.99571 * 1 2 3 33 33 H 1.09002 * 109.47037 * 240.00429 * 2 1 3 34 34 H 1.08994 * 109.47505 * 180.02562 * 3 2 1 35 35 H 1.09005 * 109.47072 * 299.99987 * 3 2 1 36 36 H 1.09000 * 109.47096 * 59.99836 * 3 2 1 37 37 H 1.07997 * 128.03646 * 359.96230 * 5 4 2 38 38 H 0.97007 * 119.99532 * 0.02562 * 9 7 6 39 39 H 1.09007 * 109.46693 * 59.99901 * 12 10 9 40 40 H 1.08992 * 109.47479 * 180.02562 * 12 10 9 41 41 H 1.09002 * 109.47130 * 300.00933 * 12 10 9 42 42 H 1.08990 * 109.46523 * 298.68262 * 15 13 10 43 43 H 1.09002 * 109.46336 * 58.64808 * 15 13 10 44 44 H 1.08999 * 109.49604 * 181.31494 * 16 15 13 45 45 H 1.09000 * 109.50123 * 301.38654 * 16 15 13 46 46 H 1.09007 * 109.50585 * 185.70374 * 17 16 15 47 47 H 1.09001 * 109.43315 * 65.42700 * 17 16 15 48 48 H 0.97000 * 120.00039 * 353.97832 * 22 21 19 49 49 H 1.08999 * 109.59145 * 66.43478 * 27 18 17 50 50 H 1.09001 * 109.58720 * 186.85599 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0325 -0.7104 1.2304 5 6 2.8184 -1.8115 1.2634 6 6 2.9925 -2.0662 2.6523 7 6 3.7731 -3.1683 3.2654 8 8 4.3438 -3.9750 2.5585 9 7 3.8494 -3.2751 4.6068 10 6 4.6199 -4.3639 5.2124 11 1 4.5305 -5.2587 4.5963 12 6 6.0913 -3.9557 5.3081 13 6 4.0788 -4.6536 6.6139 14 1 4.1691 -3.7595 7.2307 15 6 4.8807 -5.7935 7.2462 16 6 4.3615 -6.0612 8.6608 17 6 2.8946 -6.4820 8.5911 18 7 2.1382 -5.4610 7.8535 19 6 1.0223 -4.8874 8.4020 20 1 0.7351 -3.8858 8.1183 21 6 0.2602 -5.5935 9.3227 22 7 0.2799 -6.9096 9.3218 23 14 -0.7872 -4.6759 10.5677 24 1 -0.6300 -3.2132 10.3646 25 1 -2.2127 -5.0507 10.3875 26 1 -0.3510 -5.0341 11.9414 27 6 2.6056 -5.0626 6.5188 28 7 2.3287 -1.1276 3.2802 29 8 1.7928 -0.3708 2.5044 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 3.1300 1.4426 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 3.2187 -2.3686 0.4293 38 1 3.3934 -2.6313 5.1713 39 1 6.1808 -3.0609 5.9241 40 1 6.6647 -4.7660 5.7582 41 1 6.4768 -3.7493 4.3096 42 1 4.7699 -6.6940 6.6423 43 1 5.9335 -5.5148 7.2926 44 1 4.9482 -6.8573 9.1190 45 1 4.4496 -5.1540 9.2585 46 1 2.4943 -6.5751 9.6007 47 1 2.8160 -7.4389 8.0751 48 1 0.7563 -7.3871 8.6248 49 1 2.5029 -5.9013 5.8302 50 1 2.0146 -4.2193 6.1614 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025497180.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:08 Heat of formation + Delta-G solvation = 2.559023 kcal Electronic energy + Delta-G solvation = -29506.865595 eV Core-core repulsion = 25536.355923 eV Total energy + Delta-G solvation = -3970.509672 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -46.24526 -41.21019 -39.64956 -37.10959 -36.98216 -35.23985 -34.83389 -32.63552 -32.31368 -31.65122 -29.95676 -28.03140 -27.20330 -26.41558 -24.70393 -24.24900 -23.85821 -23.15118 -21.85525 -21.35711 -20.43422 -19.42793 -18.92824 -18.37659 -18.00650 -17.31854 -16.44927 -16.27517 -16.07085 -16.01109 -15.54361 -15.47492 -15.39927 -15.01260 -14.95949 -14.53783 -14.32590 -14.13831 -14.07613 -13.91357 -13.53895 -13.02919 -13.00872 -12.90626 -12.74238 -12.67492 -12.40835 -12.37766 -12.18162 -11.97289 -11.90983 -11.82185 -11.80667 -11.69637 -11.64075 -11.60398 -11.31830 -11.13321 -10.54192 -10.52240 -10.30076 -8.98117 -8.28659 -5.44796 -0.04381 0.58692 1.55221 1.63230 1.70820 1.79575 1.93805 1.97528 2.61408 2.79013 3.16027 3.31410 3.38701 3.72486 3.79360 3.84686 3.89580 3.96475 4.03138 4.13438 4.18606 4.28367 4.30776 4.33341 4.45167 4.53910 4.57134 4.68736 4.69885 4.78551 4.82013 4.82111 4.87793 4.95327 4.95905 4.97454 5.05232 5.12279 5.13901 5.14550 5.21805 5.32766 5.35222 5.37147 5.39128 5.51332 5.78408 6.16598 6.34745 6.78294 6.96130 7.01354 7.73635 8.17572 8.95317 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011492 B = 0.002944 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.961936 B = 9508.260145 C =11391.945228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.009 4.009 3 C -0.150 4.150 4 C -0.011 4.011 5 C -0.191 4.191 6 C -0.048 4.048 7 C 0.598 3.402 8 O -0.553 6.553 9 N -0.701 5.701 10 C 0.153 3.847 11 H 0.075 0.925 12 C -0.153 4.153 13 C -0.095 4.095 14 H 0.074 0.926 15 C -0.096 4.096 16 C -0.126 4.126 17 C 0.151 3.849 18 N -0.616 5.616 19 C -0.355 4.355 20 H 0.047 0.953 21 C -0.076 4.076 22 N -0.942 5.942 23 Si 1.119 2.881 24 H -0.274 1.274 25 H -0.291 1.291 26 H -0.284 1.284 27 C 0.158 3.842 28 N -0.350 5.350 29 O 0.128 5.872 30 H 0.092 0.908 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.128 0.872 34 H 0.059 0.941 35 H 0.091 0.909 36 H 0.057 0.943 37 H 0.196 0.804 38 H 0.409 0.591 39 H 0.066 0.934 40 H 0.090 0.910 41 H 0.053 0.947 42 H 0.056 0.944 43 H 0.095 0.905 44 H 0.078 0.922 45 H 0.055 0.945 46 H 0.044 0.956 47 H 0.000 1.000 48 H 0.253 0.747 49 H 0.000 1.000 50 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.521 15.680 -18.864 25.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.028 4.028 3 C -0.207 4.207 4 C -0.074 4.074 5 C -0.214 4.214 6 C -0.205 4.205 7 C 0.383 3.617 8 O -0.430 6.430 9 N -0.351 5.351 10 C 0.049 3.951 11 H 0.093 0.907 12 C -0.211 4.211 13 C -0.115 4.115 14 H 0.092 0.908 15 C -0.134 4.134 16 C -0.165 4.165 17 C 0.026 3.974 18 N -0.341 5.341 19 C -0.484 4.484 20 H 0.065 0.935 21 C -0.272 4.272 22 N -0.584 5.584 23 Si 0.943 3.057 24 H -0.199 1.199 25 H -0.218 1.218 26 H -0.211 1.211 27 C 0.032 3.968 28 N -0.050 5.050 29 O 0.051 5.949 30 H 0.111 0.889 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.146 0.854 34 H 0.078 0.922 35 H 0.110 0.890 36 H 0.076 0.924 37 H 0.213 0.787 38 H 0.244 0.756 39 H 0.085 0.915 40 H 0.108 0.892 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.113 0.887 44 H 0.097 0.903 45 H 0.074 0.926 46 H 0.062 0.938 47 H 0.018 0.982 48 H 0.063 0.937 49 H 0.018 0.982 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 7.780 15.141 -16.697 23.844 hybrid contribution 0.576 -0.415 -1.565 1.718 sum 8.356 14.726 -18.261 24.903 Atomic orbital electron populations 1.21931 0.92477 1.02692 1.03906 1.20099 0.97168 0.96651 0.88926 1.21916 1.01555 0.93377 1.03894 1.25204 0.98399 0.96598 0.87242 1.22683 1.03471 0.99466 0.95765 1.23532 1.03974 0.98757 0.94281 1.17070 0.79443 0.82749 0.82472 1.90752 1.47387 1.42622 1.62247 1.46024 1.52045 1.31304 1.05733 1.21068 0.91837 0.89166 0.93039 0.90689 1.22143 0.93621 1.03110 1.02211 1.21747 0.95455 0.99800 0.94506 0.90759 1.21454 0.99672 0.97094 0.95199 1.21854 0.95676 1.01395 0.97534 1.20800 0.91544 0.89625 0.95448 1.44345 1.28202 1.47094 1.14415 1.20237 1.04408 0.97371 1.26432 0.93484 1.27226 0.99591 0.96387 1.04008 1.70841 1.42862 1.07773 1.36914 0.82817 0.74330 0.74217 0.74322 1.19910 1.21809 1.21050 1.20918 0.93768 0.96118 0.85991 1.74222 1.09793 1.03180 1.17776 1.84734 1.53645 1.41996 1.14575 0.88872 0.92734 0.92458 0.85386 0.92229 0.88984 0.92405 0.78703 0.75570 0.91468 0.89159 0.92829 0.92519 0.88717 0.90315 0.92584 0.93779 0.98236 0.93684 0.98218 0.94131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.18 71.98 0.66 -0.70 16 2 C -0.01 -0.09 3.34 -11.54 -0.04 -0.12 16 3 C -0.15 -1.11 9.18 71.98 0.66 -0.45 16 4 C -0.01 -0.20 5.98 25.01 0.15 -0.05 16 5 C -0.19 -4.10 10.91 22.60 0.25 -3.86 16 6 C -0.05 -1.34 7.19 42.96 0.31 -1.03 16 7 C 0.60 18.97 7.81 86.93 0.68 19.65 16 8 O -0.55 -19.77 16.61 -3.70 -0.06 -19.83 16 9 N -0.70 -21.08 4.47 -444.96 -1.99 -23.07 16 10 C 0.15 4.45 2.16 44.99 0.10 4.55 16 11 H 0.07 2.43 7.58 -2.38 -0.02 2.41 16 12 C -0.15 -3.54 9.14 71.98 0.66 -2.88 16 13 C -0.09 -3.12 1.97 -10.72 -0.02 -3.14 16 14 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 15 C -0.10 -2.92 4.86 30.62 0.15 -2.77 16 16 C -0.13 -4.52 6.07 30.53 0.19 -4.33 16 17 C 0.15 7.29 4.66 86.22 0.40 7.69 16 18 N -0.62 -31.91 2.86 -699.92 -2.00 -33.91 16 19 C -0.35 -20.49 9.49 84.04 0.80 -19.69 16 20 H 0.05 2.74 7.94 -2.91 -0.02 2.72 16 21 C -0.08 -4.43 4.69 84.86 0.40 -4.03 16 22 N -0.94 -58.83 12.40 21.65 0.27 -58.56 16 23 Si 1.12 52.24 29.99 68.60 2.06 54.29 16 24 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 25 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 26 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 27 C 0.16 6.88 5.56 86.36 0.48 7.36 16 28 N -0.35 -9.80 11.84 -49.50 -0.59 -10.39 16 29 O 0.13 2.95 11.18 71.86 0.80 3.75 16 30 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.13 0.66 8.12 -2.39 -0.02 0.64 16 34 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.09 0.31 8.14 -2.38 -0.02 0.29 16 36 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.20 3.39 8.06 -2.91 -0.02 3.36 16 38 H 0.41 12.14 8.17 -92.70 -0.76 11.38 16 39 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 40 H 0.09 1.77 6.41 -2.39 -0.02 1.75 16 41 H 0.05 1.30 8.14 -2.39 -0.02 1.29 16 42 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.09 2.20 6.37 -2.39 -0.02 2.18 16 44 H 0.08 2.43 8.14 -2.39 -0.02 2.42 16 45 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 46 H 0.04 2.41 6.30 -2.38 -0.02 2.39 16 47 H 0.00 -0.02 7.87 -2.39 -0.02 -0.04 16 48 H 0.25 16.21 6.71 -92.71 -0.62 15.59 16 49 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 50 H 0.04 1.82 7.43 -2.39 -0.02 1.80 16 Total: -1.00 -73.82 399.65 4.63 -69.19 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: 0.32 Total: 22.30 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: 5.81 Total: -3.79 kcal Atomic # 7 Polarization: -121.62 SS G_CDS: -4.31 Total: -125.92 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: 0.74 Total: -16.08 kcal Atomic # 14 Polarization: 52.24 SS G_CDS: 2.06 Total: 54.29 kcal Total: -73.82 4.63 -69.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025497180.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.752 kcal (2) G-P(sol) polarization free energy of solvation -73.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds