Wall clock time and date at job start Tue Mar 31 2020 19:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.46953 * 2 1 4 4 C 1.50700 * 109.46875 * 120.00298 * 2 1 3 5 5 C 1.35310 * 126.66759 * 120.29204 * 4 2 1 6 6 C 1.42270 * 103.92176 * 180.08809 * 5 4 2 7 7 C 1.48339 * 126.93791 * 179.91055 * 6 5 4 8 8 O 1.21486 * 119.99863 * 359.69898 * 7 6 5 9 9 N 1.34773 * 119.99776 * 179.70331 * 7 6 5 10 10 C 1.46502 * 119.99835 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.46995 * 324.99831 * 10 9 7 12 12 C 1.52995 * 109.47106 * 85.00057 * 10 9 7 13 13 C 1.53005 * 109.47124 * 205.00356 * 10 9 7 14 14 H 1.09002 * 109.52720 * 60.07929 * 13 10 9 15 15 C 1.53039 * 109.49750 * 180.16363 * 13 10 9 16 16 C 1.53348 * 109.60561 * 181.32374 * 15 13 10 17 17 C 1.53188 * 109.15092 * 298.70779 * 16 15 13 18 18 N 1.46927 * 108.89428 * 54.57682 * 17 16 15 19 19 C 1.36933 * 120.63022 * 126.33925 * 18 17 16 20 20 H 1.08000 * 120.00191 * 331.82823 * 19 18 17 21 21 C 1.38816 * 120.00216 * 151.82741 * 19 18 17 22 22 N 1.31624 * 119.99356 * 343.07025 * 21 19 18 23 23 Si 1.86793 * 120.00395 * 163.07047 * 21 19 18 24 24 H 1.48493 * 109.47484 * 90.00085 * 23 21 19 25 25 H 1.48503 * 109.47169 * 210.00310 * 23 21 19 26 26 H 1.48506 * 109.47138 * 329.99723 * 23 21 19 27 27 C 1.46928 * 118.73744 * 306.32730 * 18 17 16 28 28 N 1.30983 * 106.12650 * 359.63904 * 6 5 4 29 29 O 1.20907 * 111.43359 * 0.23364 * 28 6 5 30 30 H 1.09004 * 109.46751 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47224 * 299.99915 * 1 2 3 32 32 H 1.08999 * 109.46725 * 60.00357 * 1 2 3 33 33 H 1.08993 * 109.47224 * 240.00085 * 2 1 3 34 34 H 1.08998 * 109.46845 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.47424 * 300.00120 * 3 2 1 36 36 H 1.09002 * 109.46804 * 60.00091 * 3 2 1 37 37 H 1.07998 * 128.04142 * 359.95198 * 5 4 2 38 38 H 0.97002 * 120.00126 * 0.02562 * 9 7 6 39 39 H 1.08995 * 109.47199 * 299.99926 * 12 10 9 40 40 H 1.09000 * 109.47378 * 60.00008 * 12 10 9 41 41 H 1.09002 * 109.47025 * 179.97438 * 12 10 9 42 42 H 1.09005 * 109.45764 * 301.33094 * 15 13 10 43 43 H 1.08999 * 109.46124 * 61.30579 * 15 13 10 44 44 H 1.09002 * 109.68268 * 178.74698 * 16 15 13 45 45 H 1.08996 * 109.47612 * 58.54797 * 16 15 13 46 46 H 1.09009 * 109.58540 * 294.72305 * 17 16 15 47 47 H 1.09000 * 109.59203 * 174.43998 * 17 16 15 48 48 H 0.96997 * 119.99488 * 180.02562 * 22 21 19 49 49 H 1.09002 * 109.58547 * 173.39257 * 27 18 17 50 50 H 1.08995 * 109.58382 * 293.67150 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 2.8178 -1.8118 1.2636 6 6 2.9918 -2.0665 2.6524 7 6 3.7724 -3.1688 3.2656 8 8 4.3429 -3.9754 2.5587 9 7 3.8487 -3.2753 4.6070 10 6 4.6192 -4.3643 5.2126 11 1 4.5296 -5.2590 4.5966 12 6 6.0906 -3.9561 5.3082 13 6 4.0781 -4.6538 6.6142 14 1 3.0302 -4.9461 6.5470 15 6 4.8852 -5.7885 7.2490 16 6 4.3239 -6.1031 8.6410 17 6 4.4522 -4.8602 9.5273 18 7 3.8024 -3.7270 8.8547 19 6 2.8411 -2.9928 9.4965 20 1 2.2317 -3.4517 10.2609 21 6 2.6500 -1.6585 9.1646 22 7 3.5785 -1.0070 8.4969 23 14 1.0752 -0.7877 9.6656 24 1 1.2548 -0.1713 11.0046 25 1 0.7568 0.2697 8.6727 26 1 -0.0381 -1.7691 9.7177 27 6 4.2038 -3.3966 7.4805 28 7 2.3283 -1.1278 3.2804 29 8 1.7927 -0.3708 2.5045 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 3.2177 -2.3693 0.4295 38 1 3.3928 -2.6315 5.1714 39 1 6.4760 -3.7499 4.3097 40 1 6.1802 -3.0613 5.9242 41 1 6.6638 -4.7661 5.7592 42 1 4.8176 -6.6773 6.6216 43 1 5.9285 -5.4859 7.3388 44 1 4.8837 -6.9261 9.0852 45 1 3.2736 -6.3815 8.5548 46 1 5.5063 -4.6337 9.6886 47 1 3.9670 -5.0433 10.4860 48 1 3.4451 -0.0745 8.2653 49 1 3.5529 -2.6155 7.0875 50 1 5.2366 -3.0483 7.4753 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025497181.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:12 Heat of formation + Delta-G solvation = 27.140723 kcal Electronic energy + Delta-G solvation = -29972.709576 eV Core-core repulsion = 26003.265846 eV Total energy + Delta-G solvation = -3969.443729 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -45.11259 -39.72907 -37.94825 -36.37515 -35.09969 -33.98559 -33.06320 -31.44467 -30.64255 -29.86261 -28.21122 -27.53986 -25.38099 -25.23836 -23.60832 -23.23795 -22.36783 -21.92139 -20.33778 -19.61053 -18.57866 -17.78055 -17.40129 -16.95359 -16.49415 -15.85037 -15.34249 -14.95682 -14.64561 -14.62523 -14.11645 -14.00523 -13.75081 -13.65894 -13.59205 -13.52457 -13.02097 -12.59436 -12.55220 -12.38611 -12.19802 -11.93943 -11.74607 -11.71343 -11.64785 -11.53270 -11.17538 -11.02526 -10.82813 -10.62916 -10.47069 -10.43040 -10.21290 -10.16892 -10.00654 -9.90377 -9.55777 -9.54434 -9.40071 -8.82138 -8.47316 -6.66111 -5.80212 -3.22289 1.16117 1.62330 2.84231 3.16562 3.30271 3.37379 3.45313 3.46967 4.00245 4.25241 4.49138 4.53291 4.67473 4.86688 4.97637 5.10337 5.21680 5.26929 5.28440 5.31696 5.44392 5.45734 5.51467 5.55516 5.58617 5.60077 5.69519 5.76479 5.80481 5.85640 5.88971 5.89926 6.05459 6.19725 6.27210 6.28287 6.43172 6.48818 6.52957 6.66453 6.75751 6.82959 6.87684 7.01618 7.29993 7.56585 7.66244 7.78532 8.04978 8.28881 8.43519 9.20300 9.83494 10.40667 11.28064 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010799 B = 0.003600 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2592.268243 B = 7775.037663 C = 9817.922218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.010 4.010 3 C -0.152 4.152 4 C -0.034 4.034 5 C -0.182 4.182 6 C -0.027 4.027 7 C 0.597 3.403 8 O -0.535 6.535 9 N -0.698 5.698 10 C 0.152 3.848 11 H 0.081 0.919 12 C -0.166 4.166 13 C -0.124 4.124 14 H 0.069 0.931 15 C -0.101 4.101 16 C -0.134 4.134 17 C 0.144 3.856 18 N -0.591 5.591 19 C -0.253 4.253 20 H 0.064 0.936 21 C 0.004 3.996 22 N -0.901 5.901 23 Si 0.898 3.102 24 H -0.287 1.287 25 H -0.288 1.288 26 H -0.280 1.280 27 C 0.177 3.823 28 N -0.321 5.321 29 O 0.128 5.872 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.104 0.896 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.179 0.821 38 H 0.414 0.586 39 H 0.051 0.949 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.047 0.953 43 H 0.060 0.940 44 H 0.051 0.949 45 H 0.056 0.944 46 H 0.017 0.983 47 H 0.052 0.948 48 H 0.254 0.746 49 H 0.084 0.916 50 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.704 -0.283 -17.018 17.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.029 4.029 3 C -0.209 4.209 4 C -0.097 4.097 5 C -0.204 4.204 6 C -0.186 4.186 7 C 0.380 3.620 8 O -0.411 6.411 9 N -0.350 5.350 10 C 0.048 3.952 11 H 0.099 0.901 12 C -0.224 4.224 13 C -0.145 4.145 14 H 0.087 0.913 15 C -0.139 4.139 16 C -0.173 4.173 17 C 0.018 3.982 18 N -0.314 5.314 19 C -0.383 4.383 20 H 0.082 0.918 21 C -0.194 4.194 22 N -0.546 5.546 23 Si 0.728 3.272 24 H -0.214 1.214 25 H -0.214 1.214 26 H -0.205 1.205 27 C 0.050 3.950 28 N -0.019 5.019 29 O 0.051 5.949 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.122 0.878 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.196 0.804 38 H 0.252 0.748 39 H 0.070 0.930 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.065 0.935 43 H 0.079 0.921 44 H 0.070 0.930 45 H 0.075 0.925 46 H 0.035 0.965 47 H 0.070 0.930 48 H 0.064 0.936 49 H 0.102 0.898 50 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -1.453 -0.464 -16.179 16.251 hybrid contribution -0.735 0.475 -0.167 0.890 sum -2.188 0.011 -16.346 16.492 Atomic orbital electron populations 1.21906 0.93064 1.02841 1.03113 1.19792 0.96791 0.96138 0.90220 1.21907 1.01759 0.94157 1.03117 1.24490 1.00434 0.97402 0.87414 1.22389 1.02749 0.98733 0.96519 1.23589 1.03389 0.98824 0.92783 1.16882 0.79760 0.82623 0.82699 1.90748 1.46609 1.41853 1.61937 1.46161 1.51695 1.31547 1.05614 1.21060 0.90895 0.88910 0.94334 0.90116 1.22267 0.95434 1.02876 1.01797 1.22149 0.99481 0.99980 0.92855 0.91288 1.21479 0.99318 0.96842 0.96257 1.22056 1.00401 0.98710 0.96149 1.20921 0.95518 0.87486 0.94323 1.43997 1.44212 1.32908 1.10259 1.19167 1.09129 0.90980 1.19026 0.91780 1.25015 0.97866 0.95893 1.00657 1.70012 1.31654 1.09396 1.43515 0.86361 0.83636 0.79345 0.77859 1.21388 1.21418 1.20533 1.20859 0.98769 0.91922 0.83405 1.74331 1.08838 1.02303 1.16460 1.84800 1.54129 1.42535 1.13442 0.92008 0.91570 0.91266 0.87823 0.91980 0.91262 0.91562 0.80405 0.74797 0.92963 0.91104 0.91397 0.93454 0.92088 0.93015 0.92483 0.96516 0.92955 0.93592 0.89795 0.95613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.18 37.16 0.34 -0.62 16 2 C -0.01 -0.07 3.34 -91.77 -0.31 -0.38 16 3 C -0.15 -0.97 9.18 37.16 0.34 -0.63 16 4 C -0.03 -0.38 5.98 -35.35 -0.21 -0.59 16 5 C -0.18 -2.29 10.91 -39.08 -0.43 -2.71 16 6 C -0.03 -0.43 7.19 -82.52 -0.59 -1.02 16 7 C 0.60 10.62 7.81 -12.10 -0.09 10.53 16 8 O -0.54 -10.26 16.61 5.38 0.09 -10.17 16 9 N -0.70 -12.57 5.00 -54.59 -0.27 -12.85 16 10 C 0.15 2.62 2.41 -67.93 -0.16 2.46 16 11 H 0.08 1.38 7.58 -51.93 -0.39 0.98 16 12 C -0.17 -2.70 8.79 37.16 0.33 -2.38 16 13 C -0.12 -2.31 2.33 -90.50 -0.21 -2.52 16 14 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 15 C -0.10 -1.67 4.77 -26.53 -0.13 -1.80 16 16 C -0.13 -2.31 6.11 -26.45 -0.16 -2.47 16 17 C 0.14 3.00 6.50 -3.71 -0.02 2.98 16 18 N -0.59 -14.61 2.99 -172.32 -0.52 -15.13 16 19 C -0.25 -6.91 9.58 -15.06 -0.14 -7.05 16 20 H 0.06 1.73 7.88 -52.49 -0.41 1.31 16 21 C 0.00 0.12 4.92 -17.43 -0.09 0.03 16 22 N -0.90 -25.65 11.20 55.49 0.62 -25.03 16 23 Si 0.90 21.73 29.59 -169.99 -5.03 16.70 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 C 0.18 4.03 4.08 -3.71 -0.02 4.01 16 28 N -0.32 -5.34 11.84 33.29 0.39 -4.94 16 29 O 0.13 1.79 11.18 17.25 0.19 1.98 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.10 0.54 8.12 -51.93 -0.42 0.12 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.18 1.86 8.06 -52.49 -0.42 1.44 16 38 H 0.41 8.02 6.73 -40.82 -0.27 7.74 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.07 1.26 6.32 -51.93 -0.33 0.94 16 41 H 0.07 0.99 6.46 -51.93 -0.34 0.66 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.99 6.50 -51.93 -0.34 0.65 16 44 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.02 0.35 8.14 -51.92 -0.42 -0.07 16 47 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 48 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 49 H 0.08 2.13 4.65 -51.93 -0.24 1.89 16 50 H 0.03 0.62 6.19 -51.93 -0.32 0.30 16 LS Contribution 395.23 15.07 5.96 5.96 Total: -1.00 -31.06 395.23 -8.23 -39.29 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -8.11 Total: 6.37 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: -1.56 Total: -2.17 kcal Atomic # 7 Polarization: -58.18 SS G_CDS: 0.23 Total: -57.95 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: 0.28 Total: -8.19 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.06 -8.23 -39.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025497181.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.431 kcal (2) G-P(sol) polarization free energy of solvation -31.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds