Wall clock time and date at job start Tue Mar 31 2020 19:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.46953 * 2 1 4 4 C 1.50700 * 109.46875 * 120.00298 * 2 1 3 5 5 C 1.35310 * 126.66759 * 120.29204 * 4 2 1 6 6 C 1.42270 * 103.92176 * 180.08809 * 5 4 2 7 7 C 1.48339 * 126.93791 * 179.91055 * 6 5 4 8 8 O 1.21486 * 119.99863 * 359.69898 * 7 6 5 9 9 N 1.34773 * 119.99776 * 179.70331 * 7 6 5 10 10 C 1.46502 * 119.99835 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.46995 * 324.99831 * 10 9 7 12 12 C 1.52995 * 109.47106 * 85.00057 * 10 9 7 13 13 C 1.53005 * 109.47124 * 205.00356 * 10 9 7 14 14 H 1.09002 * 109.52720 * 60.07929 * 13 10 9 15 15 C 1.53039 * 109.49750 * 180.16363 * 13 10 9 16 16 C 1.53348 * 109.60561 * 181.32374 * 15 13 10 17 17 C 1.53188 * 109.15092 * 298.70779 * 16 15 13 18 18 N 1.46927 * 108.89428 * 54.57682 * 17 16 15 19 19 C 1.36933 * 120.63022 * 126.33925 * 18 17 16 20 20 H 1.08000 * 120.00191 * 331.82823 * 19 18 17 21 21 C 1.38816 * 120.00216 * 151.82741 * 19 18 17 22 22 N 1.31624 * 119.99356 * 343.07025 * 21 19 18 23 23 Si 1.86793 * 120.00395 * 163.07047 * 21 19 18 24 24 H 1.48493 * 109.47484 * 90.00085 * 23 21 19 25 25 H 1.48503 * 109.47169 * 210.00310 * 23 21 19 26 26 H 1.48506 * 109.47138 * 329.99723 * 23 21 19 27 27 C 1.46928 * 118.73744 * 306.32730 * 18 17 16 28 28 N 1.30983 * 106.12650 * 359.63904 * 6 5 4 29 29 O 1.20907 * 111.43359 * 0.23364 * 28 6 5 30 30 H 1.09004 * 109.46751 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47224 * 299.99915 * 1 2 3 32 32 H 1.08999 * 109.46725 * 60.00357 * 1 2 3 33 33 H 1.08993 * 109.47224 * 240.00085 * 2 1 3 34 34 H 1.08998 * 109.46845 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.47424 * 300.00120 * 3 2 1 36 36 H 1.09002 * 109.46804 * 60.00091 * 3 2 1 37 37 H 1.07998 * 128.04142 * 359.95198 * 5 4 2 38 38 H 0.97002 * 120.00126 * 0.02562 * 9 7 6 39 39 H 1.08995 * 109.47199 * 299.99926 * 12 10 9 40 40 H 1.09000 * 109.47378 * 60.00008 * 12 10 9 41 41 H 1.09002 * 109.47025 * 179.97438 * 12 10 9 42 42 H 1.09005 * 109.45764 * 301.33094 * 15 13 10 43 43 H 1.08999 * 109.46124 * 61.30579 * 15 13 10 44 44 H 1.09002 * 109.68268 * 178.74698 * 16 15 13 45 45 H 1.08996 * 109.47612 * 58.54797 * 16 15 13 46 46 H 1.09009 * 109.58540 * 294.72305 * 17 16 15 47 47 H 1.09000 * 109.59203 * 174.43998 * 17 16 15 48 48 H 0.96997 * 119.99488 * 180.02562 * 22 21 19 49 49 H 1.09002 * 109.58547 * 173.39257 * 27 18 17 50 50 H 1.08995 * 109.58382 * 293.67150 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 2.8178 -1.8118 1.2636 6 6 2.9918 -2.0665 2.6524 7 6 3.7724 -3.1688 3.2656 8 8 4.3429 -3.9754 2.5587 9 7 3.8487 -3.2753 4.6070 10 6 4.6192 -4.3643 5.2126 11 1 4.5296 -5.2590 4.5966 12 6 6.0906 -3.9561 5.3082 13 6 4.0781 -4.6538 6.6142 14 1 3.0302 -4.9461 6.5470 15 6 4.8852 -5.7885 7.2490 16 6 4.3239 -6.1031 8.6410 17 6 4.4522 -4.8602 9.5273 18 7 3.8024 -3.7270 8.8547 19 6 2.8411 -2.9928 9.4965 20 1 2.2317 -3.4517 10.2609 21 6 2.6500 -1.6585 9.1646 22 7 3.5785 -1.0070 8.4969 23 14 1.0752 -0.7877 9.6656 24 1 1.2548 -0.1713 11.0046 25 1 0.7568 0.2697 8.6727 26 1 -0.0381 -1.7691 9.7177 27 6 4.2038 -3.3966 7.4805 28 7 2.3283 -1.1278 3.2804 29 8 1.7927 -0.3708 2.5045 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 3.2177 -2.3693 0.4295 38 1 3.3928 -2.6315 5.1714 39 1 6.4760 -3.7499 4.3097 40 1 6.1802 -3.0613 5.9242 41 1 6.6638 -4.7661 5.7592 42 1 4.8176 -6.6773 6.6216 43 1 5.9285 -5.4859 7.3388 44 1 4.8837 -6.9261 9.0852 45 1 3.2736 -6.3815 8.5548 46 1 5.5063 -4.6337 9.6886 47 1 3.9670 -5.0433 10.4860 48 1 3.4451 -0.0745 8.2653 49 1 3.5529 -2.6155 7.0875 50 1 5.2366 -3.0483 7.4753 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025497181.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:11 Heat of formation + Delta-G solvation = 9.068044 kcal Electronic energy + Delta-G solvation = -29973.493266 eV Core-core repulsion = 26003.265846 eV Total energy + Delta-G solvation = -3970.227420 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -46.24414 -41.16729 -39.51872 -37.05016 -36.67836 -35.18248 -34.80748 -32.93068 -31.81679 -31.54026 -29.72476 -28.03080 -27.22750 -26.61015 -24.94680 -24.23619 -23.97689 -23.10987 -21.81463 -20.91985 -20.13217 -18.93269 -18.71883 -18.34813 -17.93765 -17.27285 -16.72492 -16.19685 -16.14232 -15.79847 -15.71906 -15.40642 -15.17113 -14.94230 -14.71003 -14.52457 -14.19431 -14.13114 -13.99945 -13.77813 -13.32794 -13.03208 -13.02461 -12.88999 -12.81492 -12.66331 -12.43009 -12.36952 -12.17782 -12.15462 -11.91994 -11.81471 -11.80572 -11.61708 -11.54412 -11.47610 -11.14389 -11.08046 -10.53360 -10.53100 -10.25514 -8.65407 -7.88537 -5.33002 -0.00618 0.60876 1.42208 1.45310 1.53411 1.78085 1.96842 2.02151 2.48796 2.83655 3.25136 3.33695 3.56583 3.80267 3.87837 3.97528 3.98168 4.05769 4.10660 4.13948 4.28641 4.30899 4.35514 4.44508 4.55110 4.58677 4.71190 4.79342 4.81887 4.82590 4.84859 4.93880 4.96577 4.97162 5.02054 5.13922 5.14482 5.14821 5.24940 5.35790 5.37217 5.39353 5.40700 5.43987 5.53501 5.65342 5.76825 6.21639 6.37906 6.80266 7.01373 7.14750 7.86540 8.37658 9.16382 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010799 B = 0.003600 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2592.268243 B = 7775.037663 C = 9817.922218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.008 4.008 3 C -0.152 4.152 4 C -0.016 4.016 5 C -0.186 4.186 6 C -0.052 4.052 7 C 0.597 3.403 8 O -0.551 6.551 9 N -0.704 5.704 10 C 0.155 3.845 11 H 0.091 0.909 12 C -0.157 4.157 13 C -0.110 4.110 14 H 0.055 0.945 15 C -0.098 4.098 16 C -0.123 4.123 17 C 0.137 3.863 18 N -0.612 5.612 19 C -0.264 4.264 20 H 0.062 0.938 21 C -0.043 4.043 22 N -0.927 5.927 23 Si 0.956 3.044 24 H -0.283 1.283 25 H -0.294 1.294 26 H -0.273 1.273 27 C 0.188 3.812 28 N -0.356 5.356 29 O 0.127 5.873 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.094 0.906 33 H 0.132 0.868 34 H 0.057 0.943 35 H 0.094 0.906 36 H 0.053 0.947 37 H 0.201 0.799 38 H 0.406 0.594 39 H 0.052 0.948 40 H 0.048 0.952 41 H 0.090 0.910 42 H 0.078 0.922 43 H 0.068 0.932 44 H 0.087 0.913 45 H 0.051 0.949 46 H 0.015 0.985 47 H 0.049 0.951 48 H 0.248 0.752 49 H 0.052 0.948 50 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.011 -1.301 -18.820 18.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.027 4.027 3 C -0.209 4.209 4 C -0.079 4.079 5 C -0.208 4.208 6 C -0.209 4.209 7 C 0.382 3.618 8 O -0.429 6.429 9 N -0.354 5.354 10 C 0.051 3.949 11 H 0.109 0.891 12 C -0.214 4.214 13 C -0.131 4.131 14 H 0.074 0.926 15 C -0.136 4.136 16 C -0.162 4.162 17 C 0.011 3.989 18 N -0.335 5.335 19 C -0.394 4.394 20 H 0.080 0.920 21 C -0.239 4.239 22 N -0.573 5.573 23 Si 0.785 3.215 24 H -0.210 1.210 25 H -0.220 1.220 26 H -0.198 1.198 27 C 0.063 3.937 28 N -0.055 5.055 29 O 0.049 5.951 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.112 0.888 33 H 0.150 0.850 34 H 0.076 0.924 35 H 0.113 0.887 36 H 0.072 0.928 37 H 0.218 0.782 38 H 0.242 0.758 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.108 0.892 42 H 0.097 0.903 43 H 0.086 0.914 44 H 0.105 0.895 45 H 0.069 0.931 46 H 0.033 0.967 47 H 0.068 0.932 48 H 0.058 0.942 49 H 0.070 0.930 50 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges -1.749 -1.519 -17.966 18.115 hybrid contribution -0.646 0.825 0.382 1.115 sum -2.395 -0.694 -17.584 17.760 Atomic orbital electron populations 1.21925 0.92317 1.02843 1.03789 1.20105 0.97310 0.96398 0.88889 1.21927 1.01503 0.93692 1.03790 1.25299 0.98719 0.96639 0.87267 1.22680 1.03216 0.99441 0.95471 1.23630 1.04099 0.98774 0.94427 1.17083 0.79532 0.82833 0.82379 1.90718 1.47444 1.42626 1.62085 1.46262 1.51772 1.31527 1.05870 1.21084 0.91202 0.89139 0.93453 0.89091 1.22187 0.95060 1.02660 1.01536 1.21932 0.99373 0.98731 0.93018 0.92647 1.21504 0.99012 0.96948 0.96168 1.21948 1.00779 0.97644 0.95851 1.21111 0.94887 0.87848 0.95009 1.44298 1.44345 1.33673 1.11184 1.19449 1.09712 0.91395 1.18866 0.91983 1.25664 1.00332 0.96608 1.01290 1.70155 1.33096 1.09185 1.44830 0.85448 0.80674 0.78143 0.77277 1.20992 1.22002 1.19836 1.20614 0.96598 0.93105 0.83422 1.74337 1.10082 1.03211 1.17856 1.84754 1.53623 1.42017 1.14716 0.92356 0.92790 0.88754 0.85019 0.92423 0.88726 0.92810 0.78217 0.75805 0.92890 0.93300 0.89174 0.90309 0.91387 0.89481 0.93066 0.96687 0.93196 0.94245 0.92960 0.97531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.18 71.98 0.66 -0.92 16 2 C -0.01 -0.09 3.34 -11.54 -0.04 -0.13 16 3 C -0.15 -1.62 9.18 71.98 0.66 -0.96 16 4 C -0.02 -0.34 5.98 25.01 0.15 -0.19 16 5 C -0.19 -4.52 10.91 22.60 0.25 -4.28 16 6 C -0.05 -1.70 7.19 42.96 0.31 -1.39 16 7 C 0.60 21.66 7.81 86.93 0.68 22.33 16 8 O -0.55 -21.02 16.61 -3.67 -0.06 -21.08 16 9 N -0.70 -26.18 5.00 -444.94 -2.22 -28.40 16 10 C 0.16 5.30 2.41 44.99 0.11 5.41 16 11 H 0.09 2.97 7.58 -2.39 -0.02 2.96 16 12 C -0.16 -5.04 8.79 71.98 0.63 -4.41 16 13 C -0.11 -4.08 2.33 -10.71 -0.03 -4.10 16 14 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 15 C -0.10 -3.03 4.77 30.72 0.15 -2.88 16 16 C -0.12 -3.97 6.11 30.77 0.19 -3.78 16 17 C 0.14 5.63 6.50 86.36 0.56 6.19 16 18 N -0.61 -30.74 2.99 -699.09 -2.09 -32.83 16 19 C -0.26 -14.68 9.58 84.04 0.81 -13.87 16 20 H 0.06 3.40 7.88 -2.91 -0.02 3.37 16 21 C -0.04 -2.42 4.92 84.86 0.42 -2.00 16 22 N -0.93 -54.73 11.20 21.65 0.24 -54.48 16 23 Si 0.96 45.72 29.59 68.60 2.03 47.75 16 24 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 25 H -0.29 -14.18 7.11 99.48 0.71 -13.48 16 26 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 27 C 0.19 8.85 4.08 86.36 0.35 9.20 16 28 N -0.36 -12.30 11.84 -49.52 -0.59 -12.89 16 29 O 0.13 3.59 11.18 71.88 0.80 4.40 16 30 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.09 0.54 8.14 -2.39 -0.02 0.53 16 33 H 0.13 0.88 8.12 -2.39 -0.02 0.86 16 34 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.05 0.71 8.14 -2.39 -0.02 0.70 16 37 H 0.20 3.81 8.06 -2.91 -0.02 3.79 16 38 H 0.41 16.69 6.73 -92.71 -0.62 16.07 16 39 H 0.05 1.68 8.14 -2.39 -0.02 1.67 16 40 H 0.05 1.79 6.32 -2.39 -0.02 1.77 16 41 H 0.09 2.46 6.46 -2.39 -0.02 2.45 16 42 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 43 H 0.07 2.02 6.50 -2.39 -0.02 2.01 16 44 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 45 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.02 0.63 8.14 -2.38 -0.02 0.61 16 47 H 0.05 2.03 7.93 -2.39 -0.02 2.01 16 48 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 49 H 0.05 2.79 4.65 -2.39 -0.01 2.78 16 50 H 0.01 0.34 6.19 -2.39 -0.01 0.32 16 Total: -1.00 -69.46 395.23 4.28 -65.18 By element: Atomic # 1 Polarization: 27.81 SS G_CDS: 0.32 Total: 28.13 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: 5.85 Total: 4.23 kcal Atomic # 7 Polarization: -123.95 SS G_CDS: -4.66 Total: -128.61 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: 0.74 Total: -16.68 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -69.46 4.28 -65.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025497181.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.247 kcal (2) G-P(sol) polarization free energy of solvation -69.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds