Wall clock time and date at job start Tue Mar 31 2020 19:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47190 * 2 1 4 4 C 1.50706 * 109.46972 * 119.99493 * 2 1 3 5 5 C 1.41260 * 126.70547 * 275.26015 * 4 2 1 6 6 C 1.36819 * 103.84445 * 180.12777 * 5 4 2 7 7 C 1.47513 * 126.94064 * 179.90778 * 6 5 4 8 8 O 1.21575 * 120.00454 * 359.70203 * 7 6 5 9 9 N 1.34777 * 119.99757 * 179.70655 * 7 6 5 10 10 C 1.46503 * 120.00303 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.46812 * 34.99756 * 10 9 7 12 12 C 1.53002 * 109.47108 * 275.00146 * 10 9 7 13 13 C 1.52994 * 109.47461 * 154.99631 * 10 9 7 14 14 H 1.08997 * 109.50040 * 305.06373 * 13 10 9 15 15 C 1.53039 * 109.49852 * 185.00035 * 13 10 9 16 16 C 1.53039 * 109.54019 * 178.68410 * 15 13 10 17 17 C 1.53191 * 109.31370 * 61.36811 * 16 15 13 18 18 N 1.46933 * 108.77443 * 305.36677 * 17 16 15 19 19 C 1.36933 * 120.63187 * 233.59063 * 18 17 16 20 20 H 1.08000 * 120.00528 * 151.84397 * 19 18 17 21 21 C 1.38819 * 119.99740 * 331.83729 * 19 18 17 22 22 N 1.31616 * 119.99988 * 343.07710 * 21 19 18 23 23 Si 1.86799 * 119.99793 * 163.07744 * 21 19 18 24 24 H 1.48501 * 109.47364 * 60.00336 * 23 21 19 25 25 H 1.48506 * 109.46891 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47172 * 299.99817 * 23 21 19 27 27 C 1.46927 * 118.73678 * 53.60362 * 18 17 16 28 28 O 1.34637 * 106.11543 * 359.64092 * 6 5 4 29 29 N 1.20896 * 111.46590 * 0.24255 * 28 6 5 30 30 H 1.08995 * 109.47280 * 300.00395 * 1 2 3 31 31 H 1.09004 * 109.46862 * 60.00699 * 1 2 3 32 32 H 1.08998 * 109.46787 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47280 * 239.99605 * 2 1 3 34 34 H 1.08995 * 109.47586 * 180.02562 * 3 2 1 35 35 H 1.09004 * 109.46647 * 299.99433 * 3 2 1 36 36 H 1.09002 * 109.47245 * 59.99272 * 3 2 1 37 37 H 1.07999 * 128.07469 * 0.02562 * 5 4 2 38 38 H 0.97004 * 120.00264 * 359.97438 * 9 7 6 39 39 H 1.08995 * 109.47353 * 179.97438 * 12 10 9 40 40 H 1.09001 * 109.46966 * 299.99516 * 12 10 9 41 41 H 1.08999 * 109.46921 * 59.99288 * 12 10 9 42 42 H 1.09001 * 109.46122 * 298.70628 * 15 13 10 43 43 H 1.08999 * 109.46385 * 58.66265 * 15 13 10 44 44 H 1.08999 * 109.49670 * 181.31498 * 16 15 13 45 45 H 1.08998 * 109.49558 * 301.41629 * 16 15 13 46 46 H 1.08994 * 109.59411 * 185.57934 * 17 16 15 47 47 H 1.09005 * 109.58628 * 65.14664 * 17 16 15 48 48 H 0.96999 * 120.00068 * 180.02562 * 22 21 19 49 49 H 1.09005 * 109.58491 * 186.60854 * 27 18 17 50 50 H 1.08999 * 109.58504 * 66.18432 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7103 1.2306 5 6 2.2159 -0.1489 2.5138 6 6 2.6848 -1.1927 3.2638 7 6 3.0486 -1.1642 4.6931 8 8 2.9475 -0.1310 5.3257 9 7 3.4933 -2.2837 5.2976 10 6 3.8552 -2.2555 6.7170 11 1 3.1906 -1.5738 7.2478 12 6 5.3009 -1.7771 6.8653 13 6 3.7201 -3.6611 7.3059 14 1 2.7143 -4.0381 7.1206 15 6 3.9767 -3.6100 8.8137 16 6 3.8096 -5.0099 9.4091 17 6 4.8352 -5.9555 8.7759 18 7 4.6908 -5.8999 7.3148 19 6 4.5097 -7.0459 6.5875 20 1 3.9715 -7.0124 5.6518 21 6 5.0180 -8.2509 7.0529 22 7 5.9402 -8.2573 7.9920 23 14 4.3932 -9.8633 6.3464 24 1 4.6614 -9.9010 4.8863 25 1 5.0896 -10.9963 7.0074 26 1 2.9317 -9.9747 6.5843 27 6 4.7447 -4.5913 6.6489 28 8 2.7415 -2.2524 2.4353 29 7 2.3769 -1.9619 1.3198 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 3.1300 1.4426 -0.0005 35 1 1.6768 1.9562 -0.8901 36 1 1.6766 1.9564 0.8899 37 1 2.0310 0.8675 2.8287 38 1 3.5737 -3.1083 4.7930 39 1 5.5700 -1.7557 7.9213 40 1 5.9654 -2.4588 6.3344 41 1 5.3970 -0.7757 6.4457 42 1 4.9910 -3.2559 8.9977 43 1 3.2645 -2.9296 9.2805 44 1 3.9696 -4.9685 10.4865 45 1 2.8032 -5.3747 9.2039 46 1 4.6565 -6.9734 9.1223 47 1 5.8414 -5.6434 9.0557 48 1 6.2956 -9.0993 8.3170 49 1 4.5061 -4.7092 5.5918 50 1 5.7435 -4.1681 6.7552 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025550640.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:49 Heat of formation + Delta-G solvation = 27.364012 kcal Electronic energy + Delta-G solvation = -29475.254736 eV Core-core repulsion = 25505.820689 eV Total energy + Delta-G solvation = -3969.434047 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -45.20781 -40.01533 -38.10021 -36.93183 -35.33091 -33.18597 -32.73639 -32.17841 -30.82319 -30.46719 -28.14490 -27.62704 -25.31832 -25.00416 -24.37220 -23.26266 -22.22351 -21.80131 -20.51683 -19.93365 -18.81590 -18.21292 -17.92488 -16.77320 -16.36229 -16.12014 -15.22295 -15.01312 -14.84810 -14.69982 -14.39946 -14.21400 -13.85703 -13.82848 -13.61646 -13.48548 -13.12026 -12.62568 -12.59839 -12.41787 -12.30241 -12.06122 -11.94387 -11.83254 -11.73466 -11.68320 -11.23247 -11.00540 -10.93615 -10.61090 -10.52431 -10.42911 -10.36730 -10.21873 -10.09284 -9.93009 -9.88424 -9.64903 -9.42100 -9.10396 -8.46647 -6.67273 -5.79957 -3.22750 0.63611 1.81771 2.46699 2.87756 3.12290 3.38121 3.43882 3.45224 3.66766 4.18145 4.47639 4.59275 4.66545 4.68811 4.80242 4.95512 4.99412 5.15794 5.17172 5.20608 5.35279 5.38383 5.38630 5.42063 5.52929 5.54013 5.64442 5.67017 5.69163 5.79711 5.80436 5.81273 5.94640 6.06418 6.18626 6.21370 6.27112 6.42690 6.50980 6.57277 6.68301 6.74922 6.84379 6.95301 7.29086 7.39062 7.66253 7.78278 7.84363 7.95718 8.43800 9.20068 9.83365 10.39890 11.28300 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013552 B = 0.002733 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.601793 B =10242.152454 C =11845.433893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.017 4.017 3 C -0.146 4.146 4 C 0.015 3.985 5 C -0.152 4.152 6 C -0.079 4.079 7 C 0.604 3.396 8 O -0.519 6.519 9 N -0.702 5.702 10 C 0.149 3.851 11 H 0.087 0.913 12 C -0.167 4.167 13 C -0.114 4.114 14 H 0.074 0.926 15 C -0.100 4.100 16 C -0.143 4.143 17 C 0.170 3.830 18 N -0.590 5.590 19 C -0.255 4.255 20 H 0.065 0.935 21 C 0.004 3.996 22 N -0.902 5.902 23 Si 0.901 3.099 24 H -0.282 1.282 25 H -0.291 1.291 26 H -0.284 1.284 27 C 0.150 3.850 28 O 0.121 5.879 29 N -0.343 5.343 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.090 0.910 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.181 0.819 38 H 0.410 0.590 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.053 0.947 42 H 0.060 0.940 43 H 0.047 0.953 44 H 0.049 0.951 45 H 0.053 0.947 46 H 0.086 0.914 47 H 0.018 0.982 48 H 0.254 0.746 49 H 0.048 0.952 50 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.584 18.402 -9.839 22.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.036 4.036 3 C -0.204 4.204 4 C -0.142 4.142 5 C -0.174 4.174 6 C -0.145 4.145 7 C 0.387 3.613 8 O -0.395 6.395 9 N -0.352 5.352 10 C 0.045 3.955 11 H 0.105 0.895 12 C -0.225 4.225 13 C -0.135 4.135 14 H 0.092 0.908 15 C -0.138 4.138 16 C -0.182 4.182 17 C 0.044 3.956 18 N -0.312 5.312 19 C -0.384 4.384 20 H 0.082 0.918 21 C -0.195 4.195 22 N -0.546 5.546 23 Si 0.731 3.269 24 H -0.208 1.208 25 H -0.217 1.217 26 H -0.210 1.210 27 C 0.023 3.977 28 O 0.047 5.953 29 N -0.042 5.042 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.108 0.892 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.198 0.802 38 H 0.246 0.754 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.072 0.928 46 H 0.104 0.896 47 H 0.036 0.964 48 H 0.064 0.936 49 H 0.067 0.933 50 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -7.510 17.941 -10.165 21.946 hybrid contribution -0.319 -0.624 -0.210 0.732 sum -7.829 17.317 -10.376 21.652 Atomic orbital electron populations 1.21841 0.93205 1.02593 1.02617 1.19553 0.96272 0.95484 0.92321 1.21861 1.01606 0.94174 1.02755 1.23624 1.02757 0.90469 0.97390 1.22760 1.01835 1.01368 0.91429 1.24346 1.07178 0.88400 0.94554 1.16535 0.77847 0.84618 0.82334 1.90851 1.54615 1.31042 1.63028 1.46160 1.64409 1.11987 1.12682 1.21186 0.96702 0.98569 0.79068 0.89544 1.22278 0.96122 1.01159 1.02900 1.21981 1.02048 0.92894 0.96566 0.90758 1.21418 1.00814 0.97737 0.93829 1.22182 1.01693 0.95868 0.98436 1.20794 0.93390 0.98630 0.82797 1.44006 1.84531 1.00823 1.01888 1.19125 1.28572 0.85536 1.05203 0.91767 1.25033 0.96543 0.98516 0.99404 1.70021 1.27305 1.25478 1.31781 0.86388 0.78511 0.83365 0.78618 1.20844 1.21656 1.21043 1.21016 0.94910 0.86842 0.94943 1.85024 1.62061 1.34215 1.13979 1.73760 1.14028 1.16950 0.99485 0.92037 0.91409 0.92246 0.89171 0.92109 0.91404 0.91878 0.80166 0.75351 0.91033 0.91304 0.92764 0.92162 0.93471 0.93186 0.92781 0.89606 0.96423 0.93580 0.93338 0.95547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 9.18 37.16 0.34 -0.61 16 2 C -0.02 -0.13 3.38 -91.77 -0.31 -0.44 16 3 C -0.15 -0.86 8.81 37.16 0.33 -0.53 16 4 C 0.02 0.16 6.20 -82.17 -0.51 -0.34 16 5 C -0.15 -1.61 10.13 -38.95 -0.39 -2.01 16 6 C -0.08 -0.97 7.29 -36.32 -0.26 -1.23 16 7 C 0.60 8.13 7.78 -12.48 -0.10 8.03 16 8 O -0.52 -8.10 16.58 5.30 0.09 -8.02 16 9 N -0.70 -9.14 5.01 -54.86 -0.27 -9.42 16 10 C 0.15 2.03 2.35 -67.93 -0.16 1.87 16 11 H 0.09 1.21 7.58 -51.93 -0.39 0.81 16 12 C -0.17 -2.18 8.76 37.16 0.33 -1.85 16 13 C -0.11 -1.80 2.27 -90.50 -0.21 -2.01 16 14 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 15 C -0.10 -1.57 4.89 -26.69 -0.13 -1.70 16 16 C -0.14 -2.61 6.08 -26.61 -0.16 -2.77 16 17 C 0.17 3.91 5.30 -3.71 -0.02 3.89 16 18 N -0.59 -14.14 2.99 -172.31 -0.52 -14.65 16 19 C -0.25 -6.79 9.58 -15.06 -0.14 -6.94 16 20 H 0.06 1.68 7.88 -52.49 -0.41 1.26 16 21 C 0.00 0.10 4.92 -17.43 -0.09 0.02 16 22 N -0.90 -25.75 11.20 55.49 0.62 -25.13 16 23 Si 0.90 21.46 29.59 -169.99 -5.03 16.43 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 27 C 0.15 2.87 5.26 -3.71 -0.02 2.85 16 28 O 0.12 1.56 11.04 15.56 0.17 1.73 16 29 N -0.34 -4.42 12.04 33.52 0.40 -4.02 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.06 0.34 7.49 -51.93 -0.39 -0.04 16 37 H 0.18 1.58 7.66 -52.49 -0.40 1.18 16 38 H 0.41 5.14 7.11 -40.82 -0.29 4.85 16 39 H 0.07 0.89 6.60 -51.93 -0.34 0.55 16 40 H 0.07 0.94 6.23 -51.93 -0.32 0.62 16 41 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.93 6.63 -51.93 -0.34 0.58 16 43 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 45 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.09 2.24 6.06 -51.93 -0.31 1.93 16 47 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 49 H 0.05 0.90 6.75 -51.93 -0.35 0.55 16 50 H 0.03 0.52 6.06 -51.93 -0.31 0.20 16 LS Contribution 394.02 15.07 5.94 5.94 Total: -1.00 -30.32 394.02 -8.19 -38.52 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -8.09 Total: 2.41 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -1.51 Total: -3.79 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: 0.23 Total: -53.22 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: 0.26 Total: -6.28 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.43 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -30.32 -8.19 -38.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025550640.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.880 kcal (2) G-P(sol) polarization free energy of solvation -30.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds