Wall clock time and date at job start Tue Mar 31 2020 19:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47190 * 2 1 4 4 C 1.50706 * 109.46972 * 119.99493 * 2 1 3 5 5 C 1.41260 * 126.70547 * 275.26015 * 4 2 1 6 6 C 1.36819 * 103.84445 * 180.12777 * 5 4 2 7 7 C 1.47513 * 126.94064 * 179.90778 * 6 5 4 8 8 O 1.21575 * 120.00454 * 359.70203 * 7 6 5 9 9 N 1.34777 * 119.99757 * 179.70655 * 7 6 5 10 10 C 1.46503 * 120.00303 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.46812 * 34.99756 * 10 9 7 12 12 C 1.53002 * 109.47108 * 275.00146 * 10 9 7 13 13 C 1.52994 * 109.47461 * 154.99631 * 10 9 7 14 14 H 1.08997 * 109.50040 * 305.06373 * 13 10 9 15 15 C 1.53039 * 109.49852 * 185.00035 * 13 10 9 16 16 C 1.53039 * 109.54019 * 178.68410 * 15 13 10 17 17 C 1.53191 * 109.31370 * 61.36811 * 16 15 13 18 18 N 1.46933 * 108.77443 * 305.36677 * 17 16 15 19 19 C 1.36933 * 120.63187 * 233.59063 * 18 17 16 20 20 H 1.08000 * 120.00528 * 151.84397 * 19 18 17 21 21 C 1.38819 * 119.99740 * 331.83729 * 19 18 17 22 22 N 1.31616 * 119.99988 * 343.07710 * 21 19 18 23 23 Si 1.86799 * 119.99793 * 163.07744 * 21 19 18 24 24 H 1.48501 * 109.47364 * 60.00336 * 23 21 19 25 25 H 1.48506 * 109.46891 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47172 * 299.99817 * 23 21 19 27 27 C 1.46927 * 118.73678 * 53.60362 * 18 17 16 28 28 O 1.34637 * 106.11543 * 359.64092 * 6 5 4 29 29 N 1.20896 * 111.46590 * 0.24255 * 28 6 5 30 30 H 1.08995 * 109.47280 * 300.00395 * 1 2 3 31 31 H 1.09004 * 109.46862 * 60.00699 * 1 2 3 32 32 H 1.08998 * 109.46787 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47280 * 239.99605 * 2 1 3 34 34 H 1.08995 * 109.47586 * 180.02562 * 3 2 1 35 35 H 1.09004 * 109.46647 * 299.99433 * 3 2 1 36 36 H 1.09002 * 109.47245 * 59.99272 * 3 2 1 37 37 H 1.07999 * 128.07469 * 0.02562 * 5 4 2 38 38 H 0.97004 * 120.00264 * 359.97438 * 9 7 6 39 39 H 1.08995 * 109.47353 * 179.97438 * 12 10 9 40 40 H 1.09001 * 109.46966 * 299.99516 * 12 10 9 41 41 H 1.08999 * 109.46921 * 59.99288 * 12 10 9 42 42 H 1.09001 * 109.46122 * 298.70628 * 15 13 10 43 43 H 1.08999 * 109.46385 * 58.66265 * 15 13 10 44 44 H 1.08999 * 109.49670 * 181.31498 * 16 15 13 45 45 H 1.08998 * 109.49558 * 301.41629 * 16 15 13 46 46 H 1.08994 * 109.59411 * 185.57934 * 17 16 15 47 47 H 1.09005 * 109.58628 * 65.14664 * 17 16 15 48 48 H 0.96999 * 120.00068 * 180.02562 * 22 21 19 49 49 H 1.09005 * 109.58491 * 186.60854 * 27 18 17 50 50 H 1.08999 * 109.58504 * 66.18432 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7103 1.2306 5 6 2.2159 -0.1489 2.5138 6 6 2.6848 -1.1927 3.2638 7 6 3.0486 -1.1642 4.6931 8 8 2.9475 -0.1310 5.3257 9 7 3.4933 -2.2837 5.2976 10 6 3.8552 -2.2555 6.7170 11 1 3.1906 -1.5738 7.2478 12 6 5.3009 -1.7771 6.8653 13 6 3.7201 -3.6611 7.3059 14 1 2.7143 -4.0381 7.1206 15 6 3.9767 -3.6100 8.8137 16 6 3.8096 -5.0099 9.4091 17 6 4.8352 -5.9555 8.7759 18 7 4.6908 -5.8999 7.3148 19 6 4.5097 -7.0459 6.5875 20 1 3.9715 -7.0124 5.6518 21 6 5.0180 -8.2509 7.0529 22 7 5.9402 -8.2573 7.9920 23 14 4.3932 -9.8633 6.3464 24 1 4.6614 -9.9010 4.8863 25 1 5.0896 -10.9963 7.0074 26 1 2.9317 -9.9747 6.5843 27 6 4.7447 -4.5913 6.6489 28 8 2.7415 -2.2524 2.4353 29 7 2.3769 -1.9619 1.3198 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 3.1300 1.4426 -0.0005 35 1 1.6768 1.9562 -0.8901 36 1 1.6766 1.9564 0.8899 37 1 2.0310 0.8675 2.8287 38 1 3.5737 -3.1083 4.7930 39 1 5.5700 -1.7557 7.9213 40 1 5.9654 -2.4588 6.3344 41 1 5.3970 -0.7757 6.4457 42 1 4.9910 -3.2559 8.9977 43 1 3.2645 -2.9296 9.2805 44 1 3.9696 -4.9685 10.4865 45 1 2.8032 -5.3747 9.2039 46 1 4.6565 -6.9734 9.1223 47 1 5.8414 -5.6434 9.0557 48 1 6.2956 -9.0993 8.3170 49 1 4.5061 -4.7092 5.5918 50 1 5.7435 -4.1681 6.7552 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025550640.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:48 Heat of formation + Delta-G solvation = 10.055463 kcal Electronic energy + Delta-G solvation = -29476.005291 eV Core-core repulsion = 25505.820689 eV Total energy + Delta-G solvation = -3970.184602 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -46.11222 -41.16057 -39.51326 -37.61503 -36.75715 -34.75893 -33.58269 -33.24415 -32.30192 -32.04388 -29.48451 -28.10389 -27.20608 -26.09717 -25.14868 -24.50865 -23.82951 -22.75279 -21.90064 -20.91613 -20.13928 -19.23819 -18.85667 -18.59959 -17.35183 -17.24666 -16.81767 -16.23550 -15.99492 -15.76322 -15.56141 -15.30798 -15.09514 -14.98931 -14.71541 -14.65664 -14.18134 -14.07184 -13.95851 -13.71748 -13.31025 -13.06549 -13.02084 -12.86682 -12.72953 -12.69056 -12.51632 -12.30389 -12.27396 -12.05286 -11.95351 -11.82867 -11.72513 -11.54610 -11.44443 -11.17754 -11.16322 -11.04129 -10.88202 -10.50089 -10.21846 -8.62695 -7.85268 -5.29953 -0.32054 0.97476 1.47101 1.49061 1.49570 1.55377 1.84738 2.12467 2.52018 2.92500 3.29214 3.34606 3.58871 3.81638 3.90034 3.94144 3.99994 4.05557 4.08296 4.12552 4.24217 4.37395 4.41712 4.47361 4.49528 4.66445 4.71727 4.77850 4.83334 4.86316 4.89477 4.91494 4.94389 4.97810 5.06127 5.12815 5.15659 5.20874 5.29941 5.32467 5.34701 5.37260 5.39707 5.51090 5.59914 5.70224 5.82466 6.22417 6.41596 6.81887 7.00626 7.17756 7.89945 8.40683 9.20397 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013552 B = 0.002733 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.601793 B =10242.152454 C =11845.433893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.019 4.019 3 C -0.143 4.143 4 C 0.022 3.978 5 C -0.141 4.141 6 C -0.093 4.093 7 C 0.610 3.390 8 O -0.540 6.540 9 N -0.700 5.700 10 C 0.158 3.842 11 H 0.094 0.906 12 C -0.162 4.162 13 C -0.099 4.099 14 H 0.067 0.933 15 C -0.097 4.097 16 C -0.132 4.132 17 C 0.174 3.826 18 N -0.609 5.609 19 C -0.261 4.261 20 H 0.066 0.934 21 C -0.050 4.050 22 N -0.933 5.933 23 Si 0.962 3.038 24 H -0.276 1.276 25 H -0.295 1.295 26 H -0.280 1.280 27 C 0.148 3.852 28 O 0.105 5.895 29 N -0.368 5.368 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.044 0.956 33 H 0.090 0.910 34 H 0.054 0.946 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.201 0.799 38 H 0.412 0.588 39 H 0.081 0.919 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.066 0.934 43 H 0.078 0.922 44 H 0.070 0.930 45 H 0.047 0.953 46 H 0.049 0.951 47 H -0.003 1.003 48 H 0.249 0.751 49 H 0.049 0.951 50 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.934 20.652 -10.665 24.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.038 4.038 3 C -0.201 4.201 4 C -0.136 4.136 5 C -0.163 4.163 6 C -0.158 4.158 7 C 0.394 3.606 8 O -0.418 6.418 9 N -0.351 5.351 10 C 0.054 3.946 11 H 0.112 0.888 12 C -0.220 4.220 13 C -0.120 4.120 14 H 0.085 0.915 15 C -0.134 4.134 16 C -0.171 4.171 17 C 0.048 3.952 18 N -0.332 5.332 19 C -0.391 4.391 20 H 0.083 0.917 21 C -0.245 4.245 22 N -0.579 5.579 23 Si 0.790 3.210 24 H -0.202 1.202 25 H -0.222 1.222 26 H -0.206 1.206 27 C 0.023 3.977 28 O 0.034 5.966 29 N -0.070 5.070 30 H 0.082 0.918 31 H 0.107 0.893 32 H 0.064 0.936 33 H 0.108 0.892 34 H 0.073 0.927 35 H 0.105 0.895 36 H 0.088 0.912 37 H 0.219 0.781 38 H 0.249 0.751 39 H 0.099 0.901 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.097 0.903 44 H 0.088 0.912 45 H 0.066 0.934 46 H 0.067 0.933 47 H 0.015 0.985 48 H 0.058 0.942 49 H 0.068 0.932 50 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -8.866 20.205 -10.991 24.651 hybrid contribution 0.101 -1.267 -0.021 1.271 sum -8.765 18.939 -11.011 23.596 Atomic orbital electron populations 1.21837 0.92254 1.02058 1.03829 1.19753 0.96977 0.96283 0.90836 1.21867 1.01254 0.92931 1.04052 1.24177 1.01222 0.89780 0.98416 1.23082 1.00314 1.01816 0.91045 1.24258 1.08348 0.89010 0.94233 1.16544 0.77241 0.84181 0.82628 1.90835 1.55645 1.31639 1.63675 1.46135 1.64251 1.12135 1.12538 1.21047 0.97299 0.96933 0.79305 0.88818 1.22235 0.95343 1.00965 1.03444 1.21753 1.00200 0.93250 0.96750 0.91470 1.21414 1.02178 0.96439 0.93407 1.22015 0.99405 0.96233 0.99428 1.20625 0.93820 0.97819 0.82935 1.44267 1.84738 1.01826 1.02378 1.19458 1.27640 0.86800 1.05220 0.91652 1.25737 0.97085 1.01408 1.00279 1.70171 1.28780 1.25605 1.33387 0.85428 0.77869 0.79644 0.78036 1.20198 1.22156 1.20604 1.21152 0.95997 0.85439 0.95141 1.85002 1.62824 1.34604 1.14156 1.73758 1.15332 1.18343 0.99611 0.91761 0.89294 0.93643 0.89221 0.92670 0.89516 0.91239 0.78148 0.75144 0.90070 0.92256 0.92466 0.91533 0.90341 0.91177 0.93385 0.93301 0.98461 0.94210 0.93215 0.95611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.18 71.98 0.66 -0.92 16 2 C -0.02 -0.26 3.38 -11.54 -0.04 -0.30 16 3 C -0.14 -1.31 8.81 71.98 0.63 -0.67 16 4 C 0.02 0.44 6.20 43.56 0.27 0.71 16 5 C -0.14 -2.77 10.13 22.68 0.23 -2.54 16 6 C -0.09 -2.20 7.29 24.38 0.18 -2.02 16 7 C 0.61 15.69 7.78 86.69 0.67 16.37 16 8 O -0.54 -15.95 16.58 -3.95 -0.07 -16.01 16 9 N -0.70 -17.48 5.01 -445.74 -2.23 -19.71 16 10 C 0.16 4.01 2.35 44.99 0.11 4.11 16 11 H 0.09 2.34 7.58 -2.39 -0.02 2.33 16 12 C -0.16 -3.94 8.76 71.98 0.63 -3.31 16 13 C -0.10 -2.97 2.27 -10.72 -0.02 -3.00 16 14 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 15 C -0.10 -2.80 4.89 30.62 0.15 -2.65 16 16 C -0.13 -4.68 6.08 30.67 0.19 -4.50 16 17 C 0.17 8.17 5.30 86.36 0.46 8.63 16 18 N -0.61 -29.55 2.99 -699.07 -2.09 -31.64 16 19 C -0.26 -14.12 9.58 84.04 0.81 -13.31 16 20 H 0.07 3.44 7.88 -2.91 -0.02 3.42 16 21 C -0.05 -2.76 4.92 84.86 0.42 -2.34 16 22 N -0.93 -54.99 11.20 21.65 0.24 -54.74 16 23 Si 0.96 44.90 29.59 68.60 2.03 46.93 16 24 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 25 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 26 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 27 C 0.15 5.63 5.26 86.36 0.45 6.09 16 28 O 0.10 2.69 11.04 65.87 0.73 3.42 16 29 N -0.37 -9.34 12.04 -48.87 -0.59 -9.93 16 30 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 32 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.09 0.49 8.14 -2.38 -0.02 0.47 16 36 H 0.07 0.55 7.49 -2.39 -0.02 0.54 16 37 H 0.20 3.01 7.66 -2.91 -0.02 2.99 16 38 H 0.41 10.10 7.11 -92.71 -0.66 9.44 16 39 H 0.08 1.82 6.60 -2.39 -0.02 1.81 16 40 H 0.06 1.55 6.23 -2.39 -0.01 1.54 16 41 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.07 1.88 6.63 -2.39 -0.02 1.86 16 43 H 0.08 1.86 8.14 -2.39 -0.02 1.85 16 44 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 45 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.05 2.65 6.06 -2.39 -0.01 2.63 16 47 H 0.00 -0.14 8.14 -2.38 -0.02 -0.15 16 48 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 49 H 0.05 1.84 6.75 -2.38 -0.02 1.83 16 50 H 0.03 1.00 6.06 -2.39 -0.01 0.99 16 Total: -1.00 -66.36 394.02 4.10 -62.26 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: 0.29 Total: 19.08 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: 5.79 Total: 0.36 kcal Atomic # 7 Polarization: -111.35 SS G_CDS: -4.67 Total: -116.03 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: 0.66 Total: -12.60 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -66.36 4.10 -62.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025550640.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.316 kcal (2) G-P(sol) polarization free energy of solvation -66.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds