Wall clock time and date at job start Tue Mar 31 2020 19:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.47034 * 2 1 4 4 C 1.50695 * 109.47087 * 119.99935 * 2 1 3 5 5 C 1.41261 * 126.70950 * 275.25249 * 4 2 1 6 6 C 1.36822 * 103.85140 * 180.12747 * 5 4 2 7 7 C 1.47511 * 126.94562 * 179.90976 * 6 5 4 8 8 O 1.21582 * 120.00056 * 359.70505 * 7 6 5 9 9 N 1.34774 * 120.00106 * 179.71326 * 7 6 5 10 10 C 1.46495 * 120.00054 * 180.02562 * 9 7 6 11 11 H 1.08989 * 109.47619 * 34.99479 * 10 9 7 12 12 C 1.53003 * 109.46913 * 274.99398 * 10 9 7 13 13 C 1.53006 * 109.46983 * 154.99712 * 10 9 7 14 14 H 1.09002 * 109.49661 * 59.93457 * 13 10 9 15 15 C 1.53045 * 109.49544 * 179.97438 * 13 10 9 16 16 C 1.53037 * 109.53716 * 181.31563 * 15 13 10 17 17 C 1.53190 * 109.31429 * 298.63843 * 16 15 13 18 18 N 1.46921 * 108.89538 * 54.55783 * 17 16 15 19 19 C 1.36940 * 120.62853 * 126.46323 * 18 17 16 20 20 H 1.08000 * 119.99751 * 331.91759 * 19 18 17 21 21 C 1.38810 * 120.00078 * 151.91671 * 19 18 17 22 22 N 1.31619 * 119.99689 * 343.17980 * 21 19 18 23 23 Si 1.86795 * 119.99988 * 163.18147 * 21 19 18 24 24 H 1.48499 * 109.47320 * 89.99982 * 23 21 19 25 25 H 1.48500 * 109.47299 * 209.99808 * 23 21 19 26 26 H 1.48507 * 109.47261 * 329.99989 * 23 21 19 27 27 C 1.46956 * 118.71898 * 306.65229 * 18 17 16 28 28 O 1.34644 * 106.10787 * 359.64668 * 6 5 4 29 29 N 1.20891 * 111.47227 * 0.24100 * 28 6 5 30 30 H 1.08997 * 109.46951 * 299.99932 * 1 2 3 31 31 H 1.09001 * 109.47134 * 59.99649 * 1 2 3 32 32 H 1.08995 * 109.47086 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46951 * 240.00068 * 2 1 3 34 34 H 1.08993 * 109.47090 * 179.97438 * 3 2 1 35 35 H 1.09003 * 109.46726 * 300.00001 * 3 2 1 36 36 H 1.09004 * 109.46883 * 60.00049 * 3 2 1 37 37 H 1.08001 * 128.07405 * 0.02562 * 5 4 2 38 38 H 0.97002 * 119.99907 * 359.97438 * 9 7 6 39 39 H 1.09002 * 109.47479 * 300.00006 * 12 10 9 40 40 H 1.08995 * 109.46755 * 60.00063 * 12 10 9 41 41 H 1.09001 * 109.47258 * 180.02562 * 12 10 9 42 42 H 1.09002 * 109.45969 * 61.29282 * 15 13 10 43 43 H 1.09002 * 109.46011 * 301.33687 * 15 13 10 44 44 H 1.08999 * 109.49829 * 178.68104 * 16 15 13 45 45 H 1.09002 * 109.52361 * 58.60583 * 16 15 13 46 46 H 1.09003 * 109.58892 * 174.42567 * 17 16 15 47 47 H 1.09006 * 109.58383 * 294.70368 * 17 16 15 48 48 H 0.97000 * 119.99637 * 180.02562 * 22 21 19 49 49 H 1.09007 * 109.46418 * 293.56461 * 27 18 17 50 50 H 1.09004 * 109.60020 * 173.21602 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.2161 -0.1491 2.5137 6 6 2.6850 -1.1929 3.2637 7 6 3.0489 -1.1646 4.6929 8 8 2.9478 -0.1313 5.3257 9 7 3.4936 -2.2841 5.2974 10 6 3.8544 -2.2562 6.7169 11 1 3.1894 -1.5750 7.2476 12 6 5.2999 -1.7773 6.8663 13 6 3.7195 -3.6621 7.3052 14 1 4.3837 -4.3440 6.7741 15 6 4.0970 -3.6337 8.7881 16 6 3.9940 -5.0456 9.3696 17 6 2.5490 -5.5395 9.2478 18 7 2.1263 -5.4325 7.8448 19 6 1.6106 -6.5172 7.1869 20 1 1.9041 -7.5150 7.4779 21 6 0.7106 -6.3342 6.1461 22 7 0.0997 -5.1775 6.0001 23 14 0.3665 -7.7295 4.9527 24 1 -0.7663 -8.5456 5.4586 25 1 0.0173 -7.1686 3.6228 26 1 1.5750 -8.5835 4.8279 27 6 2.2715 -4.1404 7.1601 28 8 2.7416 -2.2526 2.4350 29 7 2.3769 -1.9621 1.3196 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 2.0313 0.8673 2.8287 38 1 3.5740 -3.1086 4.7926 39 1 5.9651 -2.4586 6.3357 40 1 5.3960 -0.7758 6.4472 41 1 5.5686 -1.7569 7.9225 42 1 3.4176 -2.9701 9.3231 43 1 5.1190 -3.2703 8.8958 44 1 4.2855 -5.0287 10.4197 45 1 4.6550 -5.7153 8.8194 46 1 2.4900 -6.5795 9.5691 47 1 1.8995 -4.9266 9.8729 48 1 -0.5295 -5.0498 5.2729 49 1 1.5990 -3.4118 7.6129 50 1 2.0293 -4.2570 6.1037 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025550641.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:52 Heat of formation + Delta-G solvation = 25.110729 kcal Electronic energy + Delta-G solvation = -30081.051579 eV Core-core repulsion = 26111.519822 eV Total energy + Delta-G solvation = -3969.531757 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.98493 -39.76459 -37.89429 -36.75607 -35.23149 -33.15788 -32.53432 -32.13222 -30.96940 -29.79925 -28.72476 -27.47553 -25.32357 -24.55440 -24.17497 -22.88888 -22.02941 -21.64096 -20.36810 -19.94632 -19.05146 -18.05786 -17.69920 -16.77113 -16.21052 -16.00300 -15.12986 -14.90831 -14.64019 -14.54207 -14.15115 -13.95436 -13.74599 -13.57612 -13.43457 -13.31089 -13.18377 -12.70292 -12.49558 -12.46533 -12.23195 -11.95870 -11.88102 -11.76791 -11.57555 -11.47150 -11.08423 -11.03163 -10.91704 -10.69035 -10.45021 -10.25496 -10.17909 -10.16487 -10.11982 -9.89673 -9.71003 -9.60490 -9.44543 -8.86680 -8.47738 -6.66359 -5.79288 -3.21996 0.86701 2.02328 2.69169 3.12865 3.34679 3.37248 3.45499 3.46665 3.85756 4.36760 4.48830 4.76370 4.83636 4.86636 4.97149 5.04589 5.17439 5.29899 5.32691 5.36590 5.44440 5.47632 5.53543 5.55441 5.57629 5.58972 5.68992 5.73458 5.78913 5.87968 5.94602 5.98622 6.02872 6.10058 6.14725 6.27568 6.37196 6.40900 6.48338 6.63056 6.64403 6.80364 6.86301 7.01052 7.31696 7.52379 7.62995 7.78969 8.06501 8.18771 8.44053 9.20731 9.84241 10.41390 11.28549 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010625 B = 0.003802 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2634.550027 B = 7363.371525 C = 9475.067413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.016 4.016 3 C -0.145 4.145 4 C 0.014 3.986 5 C -0.155 4.155 6 C -0.072 4.072 7 C 0.607 3.393 8 O -0.521 6.521 9 N -0.696 5.696 10 C 0.150 3.850 11 H 0.089 0.911 12 C -0.162 4.162 13 C -0.122 4.122 14 H 0.070 0.930 15 C -0.101 4.101 16 C -0.133 4.133 17 C 0.143 3.857 18 N -0.592 5.592 19 C -0.254 4.254 20 H 0.064 0.936 21 C 0.005 3.995 22 N -0.900 5.900 23 Si 0.897 3.103 24 H -0.287 1.287 25 H -0.289 1.289 26 H -0.279 1.279 27 C 0.179 3.821 28 O 0.121 5.879 29 N -0.344 5.344 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.089 0.911 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.180 0.820 38 H 0.409 0.591 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.070 0.930 42 H 0.056 0.944 43 H 0.051 0.949 44 H 0.050 0.950 45 H 0.057 0.943 46 H 0.052 0.948 47 H 0.016 0.984 48 H 0.253 0.747 49 H 0.017 0.983 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.506 11.748 -6.784 15.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.035 4.035 3 C -0.203 4.203 4 C -0.144 4.144 5 C -0.177 4.177 6 C -0.139 4.139 7 C 0.390 3.610 8 O -0.398 6.398 9 N -0.345 5.345 10 C 0.045 3.955 11 H 0.107 0.893 12 C -0.221 4.221 13 C -0.143 4.143 14 H 0.088 0.912 15 C -0.139 4.139 16 C -0.172 4.172 17 C 0.017 3.983 18 N -0.314 5.314 19 C -0.383 4.383 20 H 0.082 0.918 21 C -0.194 4.194 22 N -0.544 5.544 23 Si 0.727 3.273 24 H -0.214 1.214 25 H -0.215 1.215 26 H -0.204 1.204 27 C 0.053 3.947 28 O 0.048 5.952 29 N -0.044 5.044 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.107 0.893 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.197 0.803 38 H 0.245 0.755 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.089 0.911 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.076 0.924 46 H 0.070 0.930 47 H 0.034 0.966 48 H 0.063 0.937 49 H 0.035 0.965 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.330 11.485 -7.302 15.458 hybrid contribution -0.394 -0.447 -0.525 0.794 sum 6.936 11.038 -7.828 15.206 Atomic orbital electron populations 1.21845 0.93207 1.02720 1.02560 1.19531 0.96302 0.95377 0.92308 1.21854 1.01461 0.94282 1.02706 1.23587 1.02927 0.90479 0.97360 1.22723 1.02134 1.01406 0.91427 1.24339 1.06879 0.88119 0.94516 1.16479 0.77655 0.84605 0.82311 1.90834 1.54675 1.31234 1.63038 1.45972 1.64350 1.11844 1.12331 1.21123 0.95889 0.98929 0.79522 0.89290 1.22227 0.96270 1.01168 1.02394 1.22183 1.02926 0.93370 0.95786 0.91158 1.21440 0.99863 0.97431 0.95209 1.21994 0.99963 0.96443 0.98846 1.20924 0.91726 0.98389 0.87302 1.44017 1.72524 1.08704 1.06162 1.19152 1.19160 0.86652 1.13349 0.91781 1.25020 0.96258 0.96867 1.01245 1.70030 1.28411 1.23770 1.32168 0.86380 0.78162 0.81857 0.80899 1.21420 1.21504 1.20437 1.20788 0.88085 0.86088 0.99738 1.85017 1.61987 1.34202 1.13966 1.73742 1.14221 1.16773 0.99676 0.91954 0.91518 0.92170 0.89316 0.92213 0.91503 0.91856 0.80254 0.75493 0.92518 0.92591 0.91143 0.92520 0.93016 0.93094 0.92428 0.92986 0.96583 0.93686 0.96501 0.89300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.18 37.16 0.34 -0.97 16 2 C -0.02 -0.15 3.38 -91.77 -0.31 -0.46 16 3 C -0.15 -1.08 8.81 37.16 0.33 -0.75 16 4 C 0.01 0.19 6.20 -82.17 -0.51 -0.32 16 5 C -0.15 -2.04 10.13 -38.95 -0.39 -2.44 16 6 C -0.07 -1.10 7.29 -36.32 -0.26 -1.36 16 7 C 0.61 9.89 7.78 -12.48 -0.10 9.80 16 8 O -0.52 -9.49 16.58 5.29 0.09 -9.40 16 9 N -0.70 -10.89 4.48 -54.86 -0.25 -11.14 16 10 C 0.15 2.31 2.16 -67.93 -0.15 2.17 16 11 H 0.09 1.52 7.58 -51.94 -0.39 1.13 16 12 C -0.16 -2.08 9.13 37.16 0.34 -1.74 16 13 C -0.12 -2.10 1.98 -90.50 -0.18 -2.28 16 14 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 15 C -0.10 -1.58 4.85 -26.69 -0.13 -1.71 16 16 C -0.13 -2.21 6.08 -26.61 -0.16 -2.37 16 17 C 0.14 2.94 6.51 -3.71 -0.02 2.91 16 18 N -0.59 -14.42 3.00 -172.30 -0.52 -14.94 16 19 C -0.25 -6.82 9.58 -15.06 -0.14 -6.97 16 20 H 0.06 1.70 7.88 -52.49 -0.41 1.29 16 21 C 0.00 0.13 4.92 -17.43 -0.09 0.05 16 22 N -0.90 -25.72 11.20 55.49 0.62 -25.10 16 23 Si 0.90 21.56 29.59 -169.99 -5.03 16.53 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 C 0.18 4.04 4.34 -3.70 -0.02 4.03 16 28 O 0.12 1.93 11.04 15.54 0.17 2.10 16 29 N -0.34 -5.34 12.04 33.52 0.40 -4.93 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.45 7.49 -51.93 -0.39 0.07 16 37 H 0.18 2.00 7.66 -52.49 -0.40 1.60 16 38 H 0.41 6.23 8.25 -40.82 -0.34 5.89 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.07 0.82 6.40 -51.93 -0.33 0.48 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.05 0.68 6.36 -51.93 -0.33 0.35 16 44 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 47 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 49 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.09 2.22 5.58 -51.93 -0.29 1.93 16 LS Contribution 399.01 15.07 6.01 6.01 Total: -1.00 -30.78 399.01 -8.30 -39.08 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -8.35 Total: 4.22 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -1.46 Total: -2.43 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: 0.26 Total: -56.11 kcal Atomic # 8 Polarization: -7.56 SS G_CDS: 0.26 Total: -7.30 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -30.78 -8.30 -39.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025550641.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.194 kcal (2) G-P(sol) polarization free energy of solvation -30.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds