Wall clock time and date at job start Tue Mar 31 2020 19:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.47034 * 2 1 4 4 C 1.50695 * 109.47087 * 119.99935 * 2 1 3 5 5 C 1.41261 * 126.70950 * 275.25249 * 4 2 1 6 6 C 1.36822 * 103.85140 * 180.12747 * 5 4 2 7 7 C 1.47511 * 126.94562 * 179.90976 * 6 5 4 8 8 O 1.21582 * 120.00056 * 359.70505 * 7 6 5 9 9 N 1.34774 * 120.00106 * 179.71326 * 7 6 5 10 10 C 1.46495 * 120.00054 * 180.02562 * 9 7 6 11 11 H 1.08989 * 109.47619 * 34.99479 * 10 9 7 12 12 C 1.53003 * 109.46913 * 274.99398 * 10 9 7 13 13 C 1.53006 * 109.46983 * 154.99712 * 10 9 7 14 14 H 1.09002 * 109.49661 * 59.93457 * 13 10 9 15 15 C 1.53045 * 109.49544 * 179.97438 * 13 10 9 16 16 C 1.53037 * 109.53716 * 181.31563 * 15 13 10 17 17 C 1.53190 * 109.31429 * 298.63843 * 16 15 13 18 18 N 1.46921 * 108.89538 * 54.55783 * 17 16 15 19 19 C 1.36940 * 120.62853 * 126.46323 * 18 17 16 20 20 H 1.08000 * 119.99751 * 331.91759 * 19 18 17 21 21 C 1.38810 * 120.00078 * 151.91671 * 19 18 17 22 22 N 1.31619 * 119.99689 * 343.17980 * 21 19 18 23 23 Si 1.86795 * 119.99988 * 163.18147 * 21 19 18 24 24 H 1.48499 * 109.47320 * 89.99982 * 23 21 19 25 25 H 1.48500 * 109.47299 * 209.99808 * 23 21 19 26 26 H 1.48507 * 109.47261 * 329.99989 * 23 21 19 27 27 C 1.46956 * 118.71898 * 306.65229 * 18 17 16 28 28 O 1.34644 * 106.10787 * 359.64668 * 6 5 4 29 29 N 1.20891 * 111.47227 * 0.24100 * 28 6 5 30 30 H 1.08997 * 109.46951 * 299.99932 * 1 2 3 31 31 H 1.09001 * 109.47134 * 59.99649 * 1 2 3 32 32 H 1.08995 * 109.47086 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46951 * 240.00068 * 2 1 3 34 34 H 1.08993 * 109.47090 * 179.97438 * 3 2 1 35 35 H 1.09003 * 109.46726 * 300.00001 * 3 2 1 36 36 H 1.09004 * 109.46883 * 60.00049 * 3 2 1 37 37 H 1.08001 * 128.07405 * 0.02562 * 5 4 2 38 38 H 0.97002 * 119.99907 * 359.97438 * 9 7 6 39 39 H 1.09002 * 109.47479 * 300.00006 * 12 10 9 40 40 H 1.08995 * 109.46755 * 60.00063 * 12 10 9 41 41 H 1.09001 * 109.47258 * 180.02562 * 12 10 9 42 42 H 1.09002 * 109.45969 * 61.29282 * 15 13 10 43 43 H 1.09002 * 109.46011 * 301.33687 * 15 13 10 44 44 H 1.08999 * 109.49829 * 178.68104 * 16 15 13 45 45 H 1.09002 * 109.52361 * 58.60583 * 16 15 13 46 46 H 1.09003 * 109.58892 * 174.42567 * 17 16 15 47 47 H 1.09006 * 109.58383 * 294.70368 * 17 16 15 48 48 H 0.97000 * 119.99637 * 180.02562 * 22 21 19 49 49 H 1.09007 * 109.46418 * 293.56461 * 27 18 17 50 50 H 1.09004 * 109.60020 * 173.21602 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.2161 -0.1491 2.5137 6 6 2.6850 -1.1929 3.2637 7 6 3.0489 -1.1646 4.6929 8 8 2.9478 -0.1313 5.3257 9 7 3.4936 -2.2841 5.2974 10 6 3.8544 -2.2562 6.7169 11 1 3.1894 -1.5750 7.2476 12 6 5.2999 -1.7773 6.8663 13 6 3.7195 -3.6621 7.3052 14 1 4.3837 -4.3440 6.7741 15 6 4.0970 -3.6337 8.7881 16 6 3.9940 -5.0456 9.3696 17 6 2.5490 -5.5395 9.2478 18 7 2.1263 -5.4325 7.8448 19 6 1.6106 -6.5172 7.1869 20 1 1.9041 -7.5150 7.4779 21 6 0.7106 -6.3342 6.1461 22 7 0.0997 -5.1775 6.0001 23 14 0.3665 -7.7295 4.9527 24 1 -0.7663 -8.5456 5.4586 25 1 0.0173 -7.1686 3.6228 26 1 1.5750 -8.5835 4.8279 27 6 2.2715 -4.1404 7.1601 28 8 2.7416 -2.2526 2.4350 29 7 2.3769 -1.9621 1.3196 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 2.0313 0.8673 2.8287 38 1 3.5740 -3.1086 4.7926 39 1 5.9651 -2.4586 6.3357 40 1 5.3960 -0.7758 6.4472 41 1 5.5686 -1.7569 7.9225 42 1 3.4176 -2.9701 9.3231 43 1 5.1190 -3.2703 8.8958 44 1 4.2855 -5.0287 10.4197 45 1 4.6550 -5.7153 8.8194 46 1 2.4900 -6.5795 9.5691 47 1 1.8995 -4.9266 9.8729 48 1 -0.5295 -5.0498 5.2729 49 1 1.5990 -3.4118 7.6129 50 1 2.0293 -4.2570 6.1037 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025550641.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:51 Heat of formation + Delta-G solvation = 7.295239 kcal Electronic energy + Delta-G solvation = -30081.824117 eV Core-core repulsion = 26111.519822 eV Total energy + Delta-G solvation = -3970.304294 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -46.11206 -41.09664 -39.41279 -37.63210 -36.71676 -34.87058 -33.62228 -33.35932 -32.40849 -31.49513 -30.09357 -28.12525 -27.13828 -25.87577 -25.15580 -24.26457 -23.68219 -22.73936 -21.73033 -21.23722 -20.42598 -19.23022 -18.86013 -18.67645 -17.36506 -17.33697 -16.85611 -16.20316 -15.87697 -15.74507 -15.33752 -15.31373 -15.04215 -14.94274 -14.73161 -14.62144 -14.20289 -14.12464 -14.03870 -13.72906 -13.37319 -13.08857 -12.96835 -12.89390 -12.70558 -12.62052 -12.53273 -12.35371 -12.29344 -12.15081 -11.99092 -11.84644 -11.70292 -11.55671 -11.48254 -11.18788 -11.14530 -11.03704 -10.88710 -10.54930 -10.16285 -8.65320 -7.86993 -5.32252 -0.32936 0.96159 1.43533 1.46635 1.49247 1.54970 1.86504 2.14257 2.49930 2.91262 3.26121 3.34026 3.56548 3.81023 3.88874 3.97513 4.05530 4.07730 4.10297 4.14711 4.21916 4.31817 4.42777 4.46425 4.50789 4.68020 4.75763 4.77373 4.80883 4.87730 4.89154 4.89417 4.93154 5.00422 5.07568 5.10541 5.17927 5.21939 5.25824 5.27430 5.33722 5.36879 5.48104 5.49524 5.58262 5.68088 5.80969 6.23148 6.38972 6.82695 6.98745 7.15776 7.88214 8.39395 9.17597 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010625 B = 0.003802 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2634.550027 B = 7363.371525 C = 9475.067413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.018 4.018 3 C -0.141 4.141 4 C 0.024 3.976 5 C -0.144 4.144 6 C -0.091 4.091 7 C 0.607 3.393 8 O -0.544 6.544 9 N -0.695 5.695 10 C 0.153 3.847 11 H 0.070 0.930 12 C -0.152 4.152 13 C -0.106 4.106 14 H 0.073 0.927 15 C -0.099 4.099 16 C -0.122 4.122 17 C 0.135 3.865 18 N -0.611 5.611 19 C -0.259 4.259 20 H 0.065 0.935 21 C -0.044 4.044 22 N -0.930 5.930 23 Si 0.957 3.043 24 H -0.286 1.286 25 H -0.297 1.297 26 H -0.267 1.267 27 C 0.189 3.811 28 O 0.100 5.900 29 N -0.369 5.369 30 H 0.060 0.940 31 H 0.093 0.907 32 H 0.040 0.960 33 H 0.093 0.907 34 H 0.057 0.943 35 H 0.088 0.912 36 H 0.066 0.934 37 H 0.201 0.799 38 H 0.410 0.590 39 H 0.068 0.932 40 H 0.052 0.948 41 H 0.090 0.910 42 H 0.052 0.948 43 H 0.091 0.909 44 H 0.084 0.916 45 H 0.058 0.942 46 H 0.050 0.950 47 H 0.007 0.993 48 H 0.246 0.754 49 H -0.020 1.020 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.288 12.566 -7.001 17.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.037 4.037 3 C -0.199 4.199 4 C -0.134 4.134 5 C -0.166 4.166 6 C -0.156 4.156 7 C 0.391 3.609 8 O -0.422 6.422 9 N -0.344 5.344 10 C 0.049 3.951 11 H 0.088 0.912 12 C -0.210 4.210 13 C -0.127 4.127 14 H 0.091 0.909 15 C -0.137 4.137 16 C -0.161 4.161 17 C 0.009 3.991 18 N -0.335 5.335 19 C -0.390 4.390 20 H 0.083 0.917 21 C -0.240 4.240 22 N -0.576 5.576 23 Si 0.785 3.215 24 H -0.213 1.213 25 H -0.224 1.224 26 H -0.192 1.192 27 C 0.063 3.937 28 O 0.031 5.969 29 N -0.073 5.073 30 H 0.079 0.921 31 H 0.111 0.889 32 H 0.059 0.941 33 H 0.111 0.889 34 H 0.077 0.923 35 H 0.107 0.893 36 H 0.085 0.915 37 H 0.218 0.782 38 H 0.246 0.754 39 H 0.087 0.913 40 H 0.072 0.928 41 H 0.109 0.891 42 H 0.071 0.929 43 H 0.109 0.891 44 H 0.102 0.898 45 H 0.077 0.923 46 H 0.069 0.931 47 H 0.025 0.975 48 H 0.055 0.945 49 H -0.002 1.002 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 9.153 12.274 -7.469 17.036 hybrid contribution -1.024 -0.702 -0.427 1.313 sum 8.129 11.572 -7.896 16.197 Atomic orbital electron populations 1.21852 0.92609 1.01858 1.03838 1.19766 0.96693 0.96511 0.90729 1.21858 1.01384 0.92626 1.04040 1.24218 1.01099 0.89692 0.98438 1.23078 1.00529 1.01838 0.91148 1.24305 1.08229 0.88847 0.94263 1.16576 0.77228 0.84353 0.82732 1.90808 1.55810 1.31884 1.63735 1.46032 1.64071 1.11795 1.12525 1.21104 0.97660 0.97347 0.79037 0.91152 1.22145 0.93828 1.01088 1.03891 1.21945 0.98791 0.94177 0.97771 0.90892 1.21472 1.01987 0.97034 0.93197 1.21877 0.96511 0.96606 1.01094 1.21129 0.94375 0.98501 0.85064 1.44331 1.72691 1.08510 1.07926 1.19470 1.18567 0.87580 1.13365 0.91693 1.25681 0.96584 0.98858 1.02880 1.70196 1.29308 1.25600 1.32510 0.85434 0.78184 0.79423 0.78411 1.21338 1.22351 1.19199 1.20556 0.90914 0.84807 0.97379 1.84990 1.62970 1.34665 1.14266 1.73734 1.15617 1.18240 0.99679 0.92081 0.88867 0.94087 0.88893 0.92346 0.89270 0.91474 0.78160 0.75405 0.91263 0.92849 0.89142 0.92918 0.89108 0.89766 0.92306 0.93147 0.97453 0.94509 1.00155 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.18 71.98 0.66 -1.72 16 2 C -0.02 -0.32 3.38 -11.54 -0.04 -0.35 16 3 C -0.14 -1.76 8.81 71.98 0.63 -1.13 16 4 C 0.02 0.61 6.20 43.55 0.27 0.88 16 5 C -0.14 -3.76 10.13 22.68 0.23 -3.53 16 6 C -0.09 -2.82 7.29 24.38 0.18 -2.65 16 7 C 0.61 20.33 7.78 86.69 0.67 21.01 16 8 O -0.54 -20.08 16.58 -3.97 -0.07 -20.14 16 9 N -0.70 -22.32 4.48 -445.74 -2.00 -24.32 16 10 C 0.15 4.66 2.16 45.00 0.10 4.76 16 11 H 0.07 2.44 7.58 -2.39 -0.02 2.42 16 12 C -0.15 -3.52 9.13 71.98 0.66 -2.86 16 13 C -0.11 -3.60 1.98 -10.72 -0.02 -3.62 16 14 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 15 C -0.10 -2.84 4.85 30.62 0.15 -2.69 16 16 C -0.12 -3.72 6.08 30.67 0.19 -3.53 16 17 C 0.13 5.48 6.51 86.36 0.56 6.04 16 18 N -0.61 -30.31 3.00 -699.03 -2.10 -32.41 16 19 C -0.26 -14.19 9.58 84.03 0.81 -13.39 16 20 H 0.07 3.47 7.88 -2.91 -0.02 3.45 16 21 C -0.04 -2.48 4.92 84.86 0.42 -2.06 16 22 N -0.93 -55.35 11.20 21.65 0.24 -55.11 16 23 Si 0.96 45.28 29.59 68.60 2.03 47.31 16 24 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 25 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 26 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 27 C 0.19 8.83 4.34 86.35 0.37 9.20 16 28 O 0.10 3.32 11.04 65.80 0.73 4.04 16 29 N -0.37 -11.68 12.04 -48.86 -0.59 -12.27 16 30 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.07 0.80 7.49 -2.38 -0.02 0.78 16 37 H 0.20 4.23 7.66 -2.91 -0.02 4.21 16 38 H 0.41 13.01 8.25 -92.71 -0.77 12.25 16 39 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.09 1.74 6.40 -2.39 -0.02 1.73 16 42 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.09 1.98 6.36 -2.39 -0.02 1.96 16 44 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 46 H 0.05 2.02 7.93 -2.39 -0.02 2.00 16 47 H 0.01 0.32 8.14 -2.38 -0.02 0.30 16 48 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 49 H -0.02 -1.04 8.14 -2.38 -0.02 -1.06 16 50 H 0.06 3.12 5.58 -2.38 -0.01 3.11 16 Total: -1.00 -69.21 399.01 4.26 -64.95 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: 0.17 Total: 23.60 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: 5.84 Total: 4.34 kcal Atomic # 7 Polarization: -119.66 SS G_CDS: -4.44 Total: -124.10 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: 0.66 Total: -16.10 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -69.21 4.26 -64.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025550641.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.244 kcal (2) G-P(sol) polarization free energy of solvation -69.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds