Wall clock time and date at job start Tue Mar 31 2020 19:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47390 * 2 1 4 4 C 1.50701 * 109.46986 * 120.00469 * 2 1 3 5 5 C 1.41260 * 126.70487 * 275.24851 * 4 2 1 6 6 C 1.36824 * 103.84852 * 180.13111 * 5 4 2 7 7 C 1.47505 * 126.94429 * 179.90926 * 6 5 4 8 8 O 1.21591 * 120.00331 * 359.70755 * 7 6 5 9 9 N 1.34779 * 120.00406 * 179.70702 * 7 6 5 10 10 C 1.46491 * 120.00617 * 180.02562 * 9 7 6 11 11 H 1.09007 * 109.47190 * 324.99971 * 10 9 7 12 12 C 1.52999 * 109.47576 * 84.99765 * 10 9 7 13 13 C 1.53000 * 109.47358 * 205.00299 * 10 9 7 14 14 H 1.08999 * 109.49739 * 299.93030 * 13 10 9 15 15 C 1.53042 * 109.52292 * 179.85175 * 13 10 9 16 16 C 1.53046 * 109.53636 * 178.66180 * 15 13 10 17 17 C 1.52762 * 109.37765 * 61.24308 * 16 15 13 18 18 N 1.46926 * 109.01244 * 305.58424 * 17 16 15 19 19 C 1.36935 * 120.63260 * 233.59040 * 18 17 16 20 20 H 1.07998 * 119.99964 * 152.10930 * 19 18 17 21 21 C 1.38818 * 119.99962 * 332.10221 * 19 18 17 22 22 N 1.31621 * 119.99780 * 335.26864 * 21 19 18 23 23 Si 1.86796 * 119.99944 * 154.99519 * 21 19 18 24 24 H 1.48508 * 109.47191 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47528 * 119.99834 * 23 21 19 26 26 H 1.48507 * 109.46927 * 240.00155 * 23 21 19 27 27 C 1.46923 * 118.73306 * 53.31086 * 18 17 16 28 28 O 1.34642 * 106.11171 * 359.64790 * 6 5 4 29 29 N 1.20890 * 111.46579 * 0.23886 * 28 6 5 30 30 H 1.08998 * 109.47663 * 59.99575 * 1 2 3 31 31 H 1.09008 * 109.47491 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.47055 * 299.99479 * 1 2 3 33 33 H 1.09003 * 109.46876 * 239.99809 * 2 1 3 34 34 H 1.09002 * 109.47311 * 180.02562 * 3 2 1 35 35 H 1.08997 * 109.47218 * 300.00021 * 3 2 1 36 36 H 1.08998 * 109.46922 * 60.00696 * 3 2 1 37 37 H 1.08003 * 128.07312 * 0.02562 * 5 4 2 38 38 H 0.97007 * 119.99532 * 0.02562 * 9 7 6 39 39 H 1.09007 * 109.46693 * 59.99901 * 12 10 9 40 40 H 1.08992 * 109.47479 * 180.02562 * 12 10 9 41 41 H 1.09002 * 109.47130 * 300.00933 * 12 10 9 42 42 H 1.08990 * 109.46523 * 298.68262 * 15 13 10 43 43 H 1.09002 * 109.46336 * 58.64808 * 15 13 10 44 44 H 1.08999 * 109.49604 * 181.31494 * 16 15 13 45 45 H 1.09000 * 109.50123 * 301.38654 * 16 15 13 46 46 H 1.09007 * 109.50585 * 185.70374 * 17 16 15 47 47 H 1.09001 * 109.43315 * 65.42700 * 17 16 15 48 48 H 0.97000 * 120.00039 * 353.97832 * 22 21 19 49 49 H 1.08999 * 109.59145 * 66.43478 * 27 18 17 50 50 H 1.09001 * 109.58720 * 186.85599 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 2.2160 -0.1492 2.5136 6 6 2.6849 -1.1931 3.2636 7 6 3.0489 -1.1649 4.6928 8 8 2.9477 -0.1316 5.3256 9 7 3.4935 -2.2844 5.2973 10 6 3.8544 -2.2566 6.7168 11 1 4.2967 -1.2905 6.9604 12 6 2.6003 -2.4719 7.5663 13 6 4.8648 -3.3679 7.0081 14 1 4.4226 -4.3343 6.7659 15 6 5.2454 -3.3375 8.4901 16 6 6.2306 -4.4700 8.7888 17 6 7.4980 -4.2711 7.9595 18 7 7.1288 -4.1502 6.5426 19 6 7.7088 -4.9557 5.5992 20 1 7.1715 -5.2020 4.6953 21 6 8.9875 -5.4554 5.8046 22 7 9.8224 -4.8204 6.5996 23 14 9.5207 -7.0332 4.9587 24 1 8.4032 -7.5525 4.1298 25 1 10.6944 -6.7579 4.0917 26 1 9.8879 -8.0441 5.9828 27 6 6.1208 -3.1528 6.1579 28 8 2.7415 -2.2528 2.4349 29 7 2.3768 -1.9622 1.3196 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6768 1.9562 0.8900 37 1 2.0313 0.8672 2.8287 38 1 3.5745 -3.1087 4.7924 39 1 2.1580 -3.4380 7.3227 40 1 2.8688 -2.4507 8.6224 41 1 1.8804 -1.6801 7.3587 42 1 5.7101 -2.3803 8.7262 43 1 4.3497 -3.4658 9.0979 44 1 6.4832 -4.4621 9.8491 45 1 5.7753 -5.4260 8.5303 46 1 8.1586 -5.1279 8.0932 47 1 8.0049 -3.3623 8.2840 48 1 9.5768 -3.9593 6.9727 49 1 6.5130 -2.1509 6.3324 50 1 5.8729 -3.2718 5.1032 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025550642.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:56 Heat of formation + Delta-G solvation = 22.431564 kcal Electronic energy + Delta-G solvation = -29559.448552 eV Core-core repulsion = 25589.800618 eV Total energy + Delta-G solvation = -3969.647934 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -45.20758 -40.02389 -38.13712 -36.92945 -35.55956 -33.35586 -32.73824 -32.20370 -30.81210 -30.51039 -28.50242 -27.62206 -25.36191 -24.60334 -24.37129 -23.00443 -22.15898 -21.79941 -20.56295 -20.13808 -19.16036 -18.28311 -17.92951 -17.36446 -16.41837 -16.26656 -15.24814 -14.99513 -14.72208 -14.56858 -14.27409 -14.13737 -13.85406 -13.73074 -13.65927 -13.58667 -13.40590 -12.91390 -12.69079 -12.61344 -12.38588 -12.05766 -11.93942 -11.92645 -11.72807 -11.68185 -11.23114 -11.17024 -10.92943 -10.67155 -10.46930 -10.36923 -10.36250 -10.24322 -10.07877 -9.93365 -9.90897 -9.80648 -9.32258 -9.11544 -8.36260 -6.88699 -6.06407 -3.23371 0.63433 1.82055 2.45327 2.87157 3.09665 3.51215 3.53715 3.67055 3.67149 4.17801 4.55323 4.59772 4.66359 4.69718 4.78978 4.85905 4.96877 5.11779 5.16346 5.21092 5.25918 5.30613 5.38692 5.42747 5.43618 5.46691 5.54119 5.62358 5.67894 5.69810 5.79814 5.82389 5.86667 5.92383 5.98707 6.13552 6.17598 6.27273 6.34499 6.47454 6.49839 6.66643 6.69639 6.80238 7.10220 7.20892 7.25430 7.82808 7.94571 8.00324 8.57958 9.11786 9.84658 10.29176 11.21843 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012341 B = 0.002881 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.253973 B = 9716.741712 C =11352.533488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.017 4.017 3 C -0.147 4.147 4 C 0.016 3.984 5 C -0.151 4.151 6 C -0.079 4.079 7 C 0.605 3.395 8 O -0.517 6.517 9 N -0.701 5.701 10 C 0.147 3.853 11 H 0.090 0.910 12 C -0.163 4.163 13 C -0.112 4.112 14 H 0.075 0.925 15 C -0.101 4.101 16 C -0.136 4.136 17 C 0.148 3.852 18 N -0.598 5.598 19 C -0.349 4.349 20 H 0.056 0.944 21 C -0.024 4.024 22 N -0.917 5.917 23 Si 1.068 2.932 24 H -0.292 1.292 25 H -0.294 1.294 26 H -0.290 1.290 27 C 0.156 3.844 28 O 0.120 5.880 29 N -0.343 5.343 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.090 0.910 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.181 0.819 38 H 0.409 0.591 39 H 0.057 0.943 40 H 0.072 0.928 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.054 0.946 44 H 0.052 0.948 45 H 0.057 0.943 46 H 0.079 0.921 47 H 0.015 0.985 48 H 0.270 0.730 49 H 0.015 0.985 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.129 9.417 -6.241 22.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.036 4.036 3 C -0.205 4.205 4 C -0.142 4.142 5 C -0.173 4.173 6 C -0.145 4.145 7 C 0.388 3.612 8 O -0.393 6.393 9 N -0.351 5.351 10 C 0.043 3.957 11 H 0.109 0.891 12 C -0.221 4.221 13 C -0.133 4.133 14 H 0.093 0.907 15 C -0.139 4.139 16 C -0.176 4.176 17 C 0.022 3.978 18 N -0.321 5.321 19 C -0.478 4.478 20 H 0.074 0.926 21 C -0.226 4.226 22 N -0.557 5.557 23 Si 0.898 3.102 24 H -0.218 1.218 25 H -0.221 1.221 26 H -0.217 1.217 27 C 0.029 3.971 28 O 0.046 5.954 29 N -0.043 5.043 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.109 0.891 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.199 0.801 38 H 0.244 0.756 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.076 0.924 46 H 0.097 0.903 47 H 0.033 0.967 48 H 0.081 0.919 49 H 0.033 0.967 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.898 8.012 -6.797 20.754 hybrid contribution -1.268 1.420 0.188 1.913 sum -19.166 9.431 -6.609 22.360 Atomic orbital electron populations 1.21837 0.93239 1.02499 1.02613 1.19554 0.96218 0.95543 0.92331 1.21864 1.01732 0.94117 1.02740 1.23622 1.02688 0.90473 0.97375 1.22768 1.01765 1.01328 0.91440 1.24314 1.07138 0.88507 0.94507 1.16513 0.77925 0.84473 0.82267 1.90860 1.54168 1.31087 1.63206 1.46042 1.64604 1.12040 1.12434 1.21183 0.95099 1.01212 0.78214 0.89145 1.22217 0.97576 1.01873 1.00415 1.21985 0.96424 0.97247 0.97617 0.90675 1.21443 0.98669 0.99415 0.94372 1.21986 0.98494 0.98037 0.99041 1.20885 0.93629 0.99755 0.83522 1.44096 1.46069 1.39619 1.02350 1.20005 0.98691 1.26711 1.02381 0.92614 1.25829 0.91310 1.04603 1.00889 1.70714 1.35208 1.15558 1.34232 0.83493 0.75127 0.75939 0.75645 1.21810 1.22148 1.21682 1.20868 0.88114 0.91898 0.96171 1.85011 1.62101 1.34266 1.13981 1.73748 1.14011 1.17071 0.99427 0.91398 0.92313 0.92067 0.89142 0.92023 0.91384 0.91886 0.80143 0.75555 0.92367 0.90938 0.92458 0.92499 0.92725 0.92923 0.92373 0.90307 0.96685 0.91946 0.96678 0.92836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.17 37.16 0.34 -0.60 16 2 C -0.02 -0.14 3.38 -91.78 -0.31 -0.45 16 3 C -0.15 -0.93 8.81 37.16 0.33 -0.61 16 4 C 0.02 0.18 6.20 -82.17 -0.51 -0.33 16 5 C -0.15 -1.66 10.13 -38.95 -0.39 -2.06 16 6 C -0.08 -0.99 7.29 -36.32 -0.26 -1.25 16 7 C 0.61 8.32 7.78 -12.48 -0.10 8.22 16 8 O -0.52 -8.29 16.58 5.29 0.09 -8.20 16 9 N -0.70 -9.09 4.47 -54.86 -0.25 -9.34 16 10 C 0.15 1.98 2.16 -67.94 -0.15 1.83 16 11 H 0.09 1.35 7.58 -51.93 -0.39 0.95 16 12 C -0.16 -1.87 9.14 37.16 0.34 -1.53 16 13 C -0.11 -1.76 1.97 -90.50 -0.18 -1.94 16 14 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 15 C -0.10 -1.55 4.86 -26.69 -0.13 -1.68 16 16 C -0.14 -2.45 6.07 -26.83 -0.16 -2.61 16 17 C 0.15 3.39 4.66 -3.93 -0.02 3.37 16 18 N -0.60 -14.58 2.86 -172.58 -0.49 -15.07 16 19 C -0.35 -9.58 9.49 -15.06 -0.14 -9.72 16 20 H 0.06 1.54 7.94 -52.49 -0.42 1.12 16 21 C -0.02 -0.68 4.69 -17.43 -0.08 -0.77 16 22 N -0.92 -27.36 12.40 55.49 0.69 -26.68 16 23 Si 1.07 25.25 29.99 -169.99 -5.10 20.15 16 24 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 27 C 0.16 3.14 5.56 -3.71 -0.02 3.12 16 28 O 0.12 1.57 11.04 15.55 0.17 1.74 16 29 N -0.34 -4.49 12.04 33.52 0.40 -4.08 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 32 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 33 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 0.37 7.49 -51.93 -0.39 -0.02 16 37 H 0.18 1.65 7.66 -52.48 -0.40 1.25 16 38 H 0.41 4.92 8.24 -40.82 -0.34 4.59 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.77 6.41 -51.93 -0.33 0.44 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.05 0.71 6.37 -51.93 -0.33 0.38 16 44 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.08 2.04 6.30 -51.92 -0.33 1.71 16 47 H 0.02 0.36 7.87 -51.93 -0.41 -0.05 16 48 H 0.27 8.12 6.71 -40.82 -0.27 7.84 16 49 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 50 H 0.05 1.08 7.44 -51.93 -0.39 0.69 16 LS Contribution 397.91 15.07 6.00 6.00 Total: -1.00 -31.67 397.91 -8.23 -39.90 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -8.29 Total: 2.59 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: -1.45 Total: -7.00 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: 0.35 Total: -55.17 kcal Atomic # 8 Polarization: -6.72 SS G_CDS: 0.26 Total: -6.46 kcal Atomic # 14 Polarization: 25.25 SS G_CDS: -5.10 Total: 20.15 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.67 -8.23 -39.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025550642.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.330 kcal (2) G-P(sol) polarization free energy of solvation -31.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds