Wall clock time and date at job start Tue Mar 31 2020 19:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47390 * 2 1 4 4 C 1.50701 * 109.46986 * 120.00469 * 2 1 3 5 5 C 1.41260 * 126.70487 * 275.24851 * 4 2 1 6 6 C 1.36824 * 103.84852 * 180.13111 * 5 4 2 7 7 C 1.47505 * 126.94429 * 179.90926 * 6 5 4 8 8 O 1.21591 * 120.00331 * 359.70755 * 7 6 5 9 9 N 1.34779 * 120.00406 * 179.70702 * 7 6 5 10 10 C 1.46491 * 120.00617 * 180.02562 * 9 7 6 11 11 H 1.09007 * 109.47190 * 324.99971 * 10 9 7 12 12 C 1.52999 * 109.47576 * 84.99765 * 10 9 7 13 13 C 1.53000 * 109.47358 * 205.00299 * 10 9 7 14 14 H 1.08999 * 109.49739 * 299.93030 * 13 10 9 15 15 C 1.53042 * 109.52292 * 179.85175 * 13 10 9 16 16 C 1.53046 * 109.53636 * 178.66180 * 15 13 10 17 17 C 1.52762 * 109.37765 * 61.24308 * 16 15 13 18 18 N 1.46926 * 109.01244 * 305.58424 * 17 16 15 19 19 C 1.36935 * 120.63260 * 233.59040 * 18 17 16 20 20 H 1.07998 * 119.99964 * 152.10930 * 19 18 17 21 21 C 1.38818 * 119.99962 * 332.10221 * 19 18 17 22 22 N 1.31621 * 119.99780 * 335.26864 * 21 19 18 23 23 Si 1.86796 * 119.99944 * 154.99519 * 21 19 18 24 24 H 1.48508 * 109.47191 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47528 * 119.99834 * 23 21 19 26 26 H 1.48507 * 109.46927 * 240.00155 * 23 21 19 27 27 C 1.46923 * 118.73306 * 53.31086 * 18 17 16 28 28 O 1.34642 * 106.11171 * 359.64790 * 6 5 4 29 29 N 1.20890 * 111.46579 * 0.23886 * 28 6 5 30 30 H 1.08998 * 109.47663 * 59.99575 * 1 2 3 31 31 H 1.09008 * 109.47491 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.47055 * 299.99479 * 1 2 3 33 33 H 1.09003 * 109.46876 * 239.99809 * 2 1 3 34 34 H 1.09002 * 109.47311 * 180.02562 * 3 2 1 35 35 H 1.08997 * 109.47218 * 300.00021 * 3 2 1 36 36 H 1.08998 * 109.46922 * 60.00696 * 3 2 1 37 37 H 1.08003 * 128.07312 * 0.02562 * 5 4 2 38 38 H 0.97007 * 119.99532 * 0.02562 * 9 7 6 39 39 H 1.09007 * 109.46693 * 59.99901 * 12 10 9 40 40 H 1.08992 * 109.47479 * 180.02562 * 12 10 9 41 41 H 1.09002 * 109.47130 * 300.00933 * 12 10 9 42 42 H 1.08990 * 109.46523 * 298.68262 * 15 13 10 43 43 H 1.09002 * 109.46336 * 58.64808 * 15 13 10 44 44 H 1.08999 * 109.49604 * 181.31494 * 16 15 13 45 45 H 1.09000 * 109.50123 * 301.38654 * 16 15 13 46 46 H 1.09007 * 109.50585 * 185.70374 * 17 16 15 47 47 H 1.09001 * 109.43315 * 65.42700 * 17 16 15 48 48 H 0.97000 * 120.00039 * 353.97832 * 22 21 19 49 49 H 1.08999 * 109.59145 * 66.43478 * 27 18 17 50 50 H 1.09001 * 109.58720 * 186.85599 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 2.2160 -0.1492 2.5136 6 6 2.6849 -1.1931 3.2636 7 6 3.0489 -1.1649 4.6928 8 8 2.9477 -0.1316 5.3256 9 7 3.4935 -2.2844 5.2973 10 6 3.8544 -2.2566 6.7168 11 1 4.2967 -1.2905 6.9604 12 6 2.6003 -2.4719 7.5663 13 6 4.8648 -3.3679 7.0081 14 1 4.4226 -4.3343 6.7659 15 6 5.2454 -3.3375 8.4901 16 6 6.2306 -4.4700 8.7888 17 6 7.4980 -4.2711 7.9595 18 7 7.1288 -4.1502 6.5426 19 6 7.7088 -4.9557 5.5992 20 1 7.1715 -5.2020 4.6953 21 6 8.9875 -5.4554 5.8046 22 7 9.8224 -4.8204 6.5996 23 14 9.5207 -7.0332 4.9587 24 1 8.4032 -7.5525 4.1298 25 1 10.6944 -6.7579 4.0917 26 1 9.8879 -8.0441 5.9828 27 6 6.1208 -3.1528 6.1579 28 8 2.7415 -2.2528 2.4349 29 7 2.3768 -1.9622 1.3196 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6768 1.9562 0.8900 37 1 2.0313 0.8672 2.8287 38 1 3.5745 -3.1087 4.7924 39 1 2.1580 -3.4380 7.3227 40 1 2.8688 -2.4507 8.6224 41 1 1.8804 -1.6801 7.3587 42 1 5.7101 -2.3803 8.7262 43 1 4.3497 -3.4658 9.0979 44 1 6.4832 -4.4621 9.8491 45 1 5.7753 -5.4260 8.5303 46 1 8.1586 -5.1279 8.0932 47 1 8.0049 -3.3623 8.2840 48 1 9.5768 -3.9593 6.9727 49 1 6.5130 -2.1509 6.3324 50 1 5.8729 -3.2718 5.1032 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025550642.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:55 Heat of formation + Delta-G solvation = 3.920537 kcal Electronic energy + Delta-G solvation = -29560.251250 eV Core-core repulsion = 25589.800618 eV Total energy + Delta-G solvation = -3970.450632 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -46.14157 -41.18431 -39.60950 -37.64621 -36.99919 -34.94025 -33.61813 -33.26901 -32.35227 -32.02322 -29.87434 -28.12451 -27.10683 -25.87056 -25.17670 -24.32013 -23.77451 -22.76651 -21.83513 -21.30688 -20.48549 -19.42999 -19.19873 -18.88540 -17.42587 -17.36747 -16.46540 -16.18182 -15.95631 -15.87741 -15.44708 -15.37783 -15.30731 -15.08304 -14.92045 -14.69846 -14.25687 -14.20858 -14.01547 -13.83954 -13.48883 -13.08558 -12.97820 -12.84118 -12.68410 -12.61895 -12.53959 -12.34853 -12.29585 -11.91888 -11.88066 -11.84961 -11.76422 -11.64276 -11.56930 -11.28467 -11.19379 -11.08274 -10.91323 -10.48707 -10.24602 -8.93300 -8.24244 -5.40341 -0.35554 0.94411 1.44987 1.57784 1.65328 1.81266 1.81331 2.08653 2.64515 2.89410 3.20099 3.31509 3.43819 3.75450 3.82655 3.87296 3.91605 3.96819 4.05125 4.10370 4.21809 4.24165 4.35667 4.39577 4.45081 4.52722 4.63439 4.75536 4.75873 4.76046 4.81089 4.85269 4.89436 4.91874 4.94529 5.01997 5.10029 5.10825 5.19189 5.20223 5.27133 5.28481 5.32190 5.38365 5.40971 5.57118 5.83545 6.18134 6.38950 6.78883 6.97044 7.06052 7.78107 8.22379 8.99775 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012341 B = 0.002881 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.253973 B = 9716.741712 C =11352.533488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.019 4.019 3 C -0.145 4.145 4 C 0.023 3.977 5 C -0.142 4.142 6 C -0.093 4.093 7 C 0.609 3.391 8 O -0.542 6.542 9 N -0.698 5.698 10 C 0.154 3.846 11 H 0.078 0.922 12 C -0.155 4.155 13 C -0.095 4.095 14 H 0.078 0.922 15 C -0.097 4.097 16 C -0.126 4.126 17 C 0.151 3.849 18 N -0.616 5.616 19 C -0.351 4.351 20 H 0.051 0.949 21 C -0.078 4.078 22 N -0.945 5.945 23 Si 1.117 2.883 24 H -0.273 1.273 25 H -0.293 1.293 26 H -0.286 1.286 27 C 0.155 3.845 28 O 0.106 5.894 29 N -0.367 5.367 30 H 0.088 0.912 31 H 0.047 0.953 32 H 0.064 0.936 33 H 0.089 0.911 34 H 0.051 0.949 35 H 0.087 0.913 36 H 0.069 0.931 37 H 0.200 0.800 38 H 0.413 0.587 39 H 0.068 0.932 40 H 0.087 0.913 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.094 0.906 44 H 0.075 0.925 45 H 0.056 0.944 46 H 0.042 0.958 47 H -0.001 1.001 48 H 0.253 0.747 49 H 0.001 0.999 50 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.592 9.740 -6.444 24.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.039 4.039 3 C -0.202 4.202 4 C -0.135 4.135 5 C -0.164 4.164 6 C -0.159 4.159 7 C 0.393 3.607 8 O -0.420 6.420 9 N -0.348 5.348 10 C 0.050 3.950 11 H 0.096 0.904 12 C -0.213 4.213 13 C -0.116 4.116 14 H 0.096 0.904 15 C -0.135 4.135 16 C -0.165 4.165 17 C 0.026 3.974 18 N -0.341 5.341 19 C -0.481 4.481 20 H 0.069 0.931 21 C -0.274 4.274 22 N -0.587 5.587 23 Si 0.942 3.058 24 H -0.198 1.198 25 H -0.221 1.221 26 H -0.213 1.213 27 C 0.029 3.971 28 O 0.035 5.965 29 N -0.069 5.069 30 H 0.107 0.893 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.108 0.892 34 H 0.070 0.930 35 H 0.106 0.894 36 H 0.088 0.912 37 H 0.217 0.783 38 H 0.250 0.750 39 H 0.088 0.912 40 H 0.106 0.894 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.112 0.888 44 H 0.094 0.906 45 H 0.074 0.926 46 H 0.060 0.940 47 H 0.017 0.983 48 H 0.063 0.937 49 H 0.019 0.981 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -20.392 8.331 -6.982 23.108 hybrid contribution -0.510 1.404 0.180 1.505 sum -20.902 9.735 -6.802 24.040 Atomic orbital electron populations 1.21827 0.91961 1.02176 1.03851 1.19756 0.97196 0.96122 0.90798 1.21874 1.01120 0.93135 1.04092 1.24173 1.01188 0.89815 0.98357 1.23085 1.00387 1.01758 0.91170 1.24232 1.08260 0.89157 0.94204 1.16558 0.77456 0.84107 0.82580 1.90842 1.55412 1.31820 1.63908 1.46036 1.64192 1.12163 1.12450 1.21068 0.95608 0.99450 0.78866 0.90421 1.22158 0.96069 1.02412 1.00633 1.21757 0.94442 0.98214 0.97165 0.90403 1.21454 0.99481 0.98181 0.94356 1.21852 0.96333 0.99026 0.99279 1.20787 0.95520 0.97350 0.83783 1.44348 1.46700 1.40414 1.02618 1.20252 0.98580 1.26527 1.02728 0.93145 1.27160 0.91747 1.07054 1.01411 1.70840 1.36059 1.15442 1.36338 0.82837 0.75314 0.72649 0.75028 1.19761 1.22062 1.21277 1.20976 0.89058 0.90112 0.96924 1.84988 1.62806 1.34554 1.14121 1.73741 1.15250 1.18393 0.99536 0.89285 0.93409 0.91731 0.89227 0.92989 0.89399 0.91236 0.78282 0.75038 0.91250 0.89431 0.92636 0.92577 0.88767 0.90602 0.92560 0.93991 0.98335 0.93666 0.98075 0.93480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.17 71.98 0.66 -0.89 16 2 C -0.02 -0.28 3.38 -11.54 -0.04 -0.31 16 3 C -0.14 -1.53 8.81 71.98 0.63 -0.90 16 4 C 0.02 0.48 6.20 43.55 0.27 0.75 16 5 C -0.14 -2.98 10.13 22.68 0.23 -2.75 16 6 C -0.09 -2.30 7.29 24.38 0.18 -2.12 16 7 C 0.61 16.44 7.78 86.69 0.67 17.11 16 8 O -0.54 -17.00 16.58 -4.00 -0.07 -17.06 16 9 N -0.70 -17.60 4.47 -445.74 -1.99 -19.59 16 10 C 0.15 3.91 2.16 44.99 0.10 4.01 16 11 H 0.08 2.22 7.58 -2.38 -0.02 2.21 16 12 C -0.15 -3.09 9.14 71.98 0.66 -2.43 16 13 C -0.10 -2.85 1.97 -10.72 -0.02 -2.88 16 14 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 15 C -0.10 -2.74 4.86 30.62 0.15 -2.59 16 16 C -0.13 -4.35 6.07 30.53 0.19 -4.16 16 17 C 0.15 7.08 4.66 86.22 0.40 7.48 16 18 N -0.62 -30.71 2.86 -699.92 -2.00 -32.71 16 19 C -0.35 -19.68 9.49 84.04 0.80 -18.88 16 20 H 0.05 2.83 7.94 -2.91 -0.02 2.81 16 21 C -0.08 -4.45 4.69 84.86 0.40 -4.06 16 22 N -0.94 -58.29 12.40 21.65 0.27 -58.02 16 23 Si 1.12 51.54 29.99 68.60 2.06 53.60 16 24 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 25 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 26 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 27 C 0.15 6.30 5.56 86.36 0.48 6.78 16 28 O 0.11 2.78 11.04 65.82 0.73 3.50 16 29 N -0.37 -9.52 12.04 -48.85 -0.59 -10.11 16 30 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 33 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.07 0.65 7.49 -2.39 -0.02 0.63 16 37 H 0.20 3.30 7.66 -2.91 -0.02 3.27 16 38 H 0.41 9.75 8.24 -92.70 -0.76 8.98 16 39 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 40 H 0.09 1.50 6.41 -2.39 -0.02 1.49 16 41 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.09 2.01 6.37 -2.39 -0.02 1.99 16 44 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 45 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 46 H 0.04 2.25 6.30 -2.38 -0.02 2.24 16 47 H 0.00 -0.07 7.87 -2.39 -0.02 -0.08 16 48 H 0.25 16.00 6.71 -92.71 -0.62 15.38 16 49 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 50 H 0.05 1.93 7.44 -2.39 -0.02 1.91 16 Total: -1.00 -70.79 397.91 4.48 -66.31 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: 0.32 Total: 19.92 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: 5.75 Total: -5.84 kcal Atomic # 7 Polarization: -116.12 SS G_CDS: -4.31 Total: -120.43 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: 0.66 Total: -13.56 kcal Atomic # 14 Polarization: 51.54 SS G_CDS: 2.06 Total: 53.60 kcal Total: -70.79 4.48 -66.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025550642.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.235 kcal (2) G-P(sol) polarization free energy of solvation -70.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds