Wall clock time and date at job start Tue Mar 31 2020 19:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47137 * 2 1 4 4 C 1.50702 * 109.46932 * 119.99665 * 2 1 3 5 5 O 1.33493 * 126.83259 * 299.99997 * 4 2 1 6 6 N 1.20660 * 113.15813 * 179.97438 * 5 4 2 7 7 C 1.30013 * 112.30162 * 359.73833 * 6 5 4 8 8 C 1.37368 * 126.82629 * 120.00160 * 4 2 1 9 9 C 1.47393 * 128.56400 * 359.96104 * 8 4 2 10 10 O 1.21608 * 120.00238 * 0.02562 * 9 8 4 11 11 N 1.34780 * 119.99726 * 179.97438 * 9 8 4 12 12 C 1.46501 * 119.99880 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.47370 * 35.00066 * 12 11 9 14 14 C 1.53003 * 109.47178 * 275.00308 * 12 11 9 15 15 C 1.53000 * 109.47101 * 155.00672 * 12 11 9 16 16 H 1.09003 * 109.49496 * 304.93197 * 15 12 11 17 17 C 1.53037 * 109.52252 * 184.85529 * 15 12 11 18 18 C 1.53047 * 109.53795 * 178.66489 * 17 15 12 19 19 C 1.52754 * 109.38378 * 61.23712 * 18 17 15 20 20 N 1.46932 * 109.01099 * 305.59147 * 19 18 17 21 21 C 1.36931 * 120.62964 * 233.58902 * 20 19 18 22 22 H 1.08002 * 120.00075 * 152.35895 * 21 20 19 23 23 C 1.38813 * 120.00120 * 332.34384 * 21 20 19 24 24 N 1.31621 * 120.00027 * 342.76454 * 23 21 20 25 25 Si 1.86800 * 120.00058 * 162.47463 * 23 21 20 26 26 H 1.48507 * 109.46810 * 84.99183 * 25 23 21 27 27 H 1.48499 * 109.47476 * 204.98927 * 25 23 21 28 28 H 1.48496 * 109.47213 * 324.99479 * 25 23 21 29 29 C 1.46924 * 118.73758 * 53.30692 * 20 19 18 30 30 H 1.08997 * 109.47012 * 300.00004 * 1 2 3 31 31 H 1.08995 * 109.47154 * 60.00222 * 1 2 3 32 32 H 1.09003 * 109.46934 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47384 * 239.99604 * 2 1 3 34 34 H 1.08997 * 109.47173 * 60.00095 * 3 2 1 35 35 H 1.09001 * 109.46762 * 179.97438 * 3 2 1 36 36 H 1.08995 * 109.46917 * 299.99923 * 3 2 1 37 37 H 1.08001 * 127.33604 * 180.27507 * 7 6 5 38 38 H 0.96999 * 120.00192 * 0.02562 * 11 9 8 39 39 H 1.08997 * 109.47143 * 59.99761 * 14 12 11 40 40 H 1.08999 * 109.47187 * 180.02562 * 14 12 11 41 41 H 1.09006 * 109.47190 * 300.00041 * 14 12 11 42 42 H 1.09002 * 109.46301 * 298.67870 * 17 15 12 43 43 H 1.09001 * 109.46592 * 58.64626 * 17 15 12 44 44 H 1.08995 * 109.49608 * 181.31623 * 18 17 15 45 45 H 1.09006 * 109.49576 * 301.37707 * 18 17 15 46 46 H 1.08997 * 109.51067 * 185.71031 * 19 18 17 47 47 H 1.08997 * 109.43181 * 65.42668 * 19 18 17 48 48 H 0.96998 * 119.99813 * 179.72089 * 24 23 21 49 49 H 1.09004 * 109.58803 * 66.43223 * 29 20 19 50 50 H 1.08993 * 109.58971 * 186.86030 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.7953 -0.3752 2.5008 6 7 2.3202 -1.1183 3.2934 7 6 2.9863 -2.0706 2.7106 8 6 2.8251 -1.8315 1.2681 9 6 3.3729 -2.6076 0.1411 10 8 3.1341 -2.2704 -1.0026 11 7 4.1395 -3.6906 0.3782 12 6 4.6845 -4.4617 -0.7419 13 1 4.9288 -3.7872 -1.5626 14 6 3.6457 -5.4818 -1.2122 15 6 5.9495 -5.1937 -0.2894 16 1 6.6561 -4.4757 0.1270 17 6 6.5869 -5.9015 -1.4873 18 6 7.8703 -6.6063 -1.0418 19 6 7.5318 -7.6550 0.0160 20 7 6.7866 -7.0115 1.1066 21 6 7.2064 -7.1321 2.4044 22 1 6.9754 -6.3576 3.1209 23 6 7.9285 -8.2499 2.7994 24 7 7.9246 -9.3336 2.0524 25 14 8.9123 -8.2134 4.3869 26 1 8.0255 -8.5593 5.5268 27 1 10.0206 -9.1984 4.3053 28 1 9.4727 -6.8534 4.5908 29 6 5.5861 -6.2311 0.7776 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 3.1300 1.4424 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 3.5418 -2.8664 3.1846 38 1 4.3303 -3.9594 1.2905 39 1 2.7444 -4.9603 -1.5344 40 1 4.0513 -6.0558 -2.0452 41 1 3.4013 -6.1563 -0.3915 42 1 5.8892 -6.6369 -1.8879 43 1 6.8241 -5.1685 -2.2583 44 1 8.3360 -7.0906 -1.9001 45 1 8.5590 -5.8749 -0.6189 46 1 8.4526 -8.0872 0.4079 47 1 6.9201 -8.4379 -0.4323 48 1 8.4324 -10.1133 2.3264 49 1 4.8124 -6.8955 0.3926 50 1 5.2235 -5.7240 1.6716 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025585479.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:16 Heat of formation + Delta-G solvation = 25.234301 kcal Electronic energy + Delta-G solvation = -29894.934983 eV Core-core repulsion = 25925.408585 eV Total energy + Delta-G solvation = -3969.526398 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -45.10650 -39.92378 -38.10458 -36.29175 -35.19148 -33.97271 -32.99539 -31.35836 -30.70148 -30.50310 -28.14871 -27.53104 -25.37844 -25.32925 -23.99689 -23.27427 -22.22963 -21.28884 -20.36386 -20.27491 -18.67557 -17.93746 -17.87227 -16.80895 -16.48672 -15.95641 -15.33793 -15.01023 -14.91379 -14.72425 -14.38251 -14.04948 -13.94318 -13.67147 -13.56921 -13.47221 -13.13065 -12.57742 -12.56183 -12.43868 -12.31686 -12.05906 -11.84064 -11.76547 -11.65617 -11.63368 -11.10463 -11.02973 -10.94773 -10.61044 -10.58991 -10.51759 -10.24637 -10.18799 -10.02013 -9.90066 -9.68959 -9.63680 -9.44078 -8.99562 -8.49598 -6.70995 -5.83198 -3.25452 0.88889 1.62455 2.58025 3.13143 3.17323 3.33810 3.41342 3.42975 4.04079 4.08279 4.35111 4.44457 4.55959 4.70625 4.86862 4.97646 5.08613 5.18129 5.27388 5.30261 5.35506 5.37843 5.45221 5.51355 5.53663 5.60255 5.64718 5.66825 5.69083 5.81430 5.85982 5.93857 5.99917 6.08912 6.18129 6.21300 6.30158 6.44654 6.53414 6.57873 6.67090 6.73554 6.83767 6.93617 7.36947 7.47729 7.63710 7.74192 7.97724 8.13445 8.39962 9.16512 9.80298 10.36589 11.25001 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015152 B = 0.002871 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.514796 B = 9749.284800 C =11092.823053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.028 4.028 3 C -0.148 4.148 4 C 0.055 3.945 5 O 0.093 5.907 6 N -0.355 5.355 7 C 0.025 3.975 8 C -0.262 4.262 9 C 0.599 3.401 10 O -0.540 6.540 11 N -0.709 5.709 12 C 0.151 3.849 13 H 0.084 0.916 14 C -0.165 4.165 15 C -0.114 4.114 16 H 0.072 0.928 17 C -0.100 4.100 18 C -0.142 4.142 19 C 0.169 3.831 20 N -0.591 5.591 21 C -0.255 4.255 22 H 0.064 0.936 23 C 0.004 3.996 24 N -0.901 5.901 25 Si 0.900 3.100 26 H -0.286 1.286 27 H -0.289 1.289 28 H -0.280 1.280 29 C 0.151 3.849 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.130 0.870 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.203 0.797 38 H 0.403 0.597 39 H 0.053 0.947 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.059 0.941 43 H 0.046 0.954 44 H 0.050 0.950 45 H 0.053 0.947 46 H 0.086 0.914 47 H 0.017 0.983 48 H 0.254 0.746 49 H 0.026 0.974 50 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.600 16.490 -6.180 21.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.048 4.048 3 C -0.205 4.205 4 C -0.010 4.010 5 O 0.033 5.967 6 N -0.060 5.060 7 C -0.158 4.158 8 C -0.269 4.269 9 C 0.385 3.615 10 O -0.419 6.419 11 N -0.359 5.359 12 C 0.047 3.953 13 H 0.102 0.898 14 C -0.223 4.223 15 C -0.135 4.135 16 H 0.091 0.909 17 C -0.138 4.138 18 C -0.181 4.181 19 C 0.043 3.957 20 N -0.313 5.313 21 C -0.384 4.384 22 H 0.082 0.918 23 C -0.195 4.195 24 N -0.545 5.545 25 Si 0.730 3.270 26 H -0.213 1.213 27 H -0.215 1.215 28 H -0.206 1.206 29 C 0.025 3.975 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.147 0.853 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.220 0.780 38 H 0.238 0.762 39 H 0.072 0.928 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.072 0.928 46 H 0.104 0.896 47 H 0.035 0.965 48 H 0.064 0.936 49 H 0.044 0.956 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.908 16.883 -5.668 21.423 hybrid contribution 1.036 -0.764 0.830 1.532 sum -10.872 16.119 -4.838 20.036 Atomic orbital electron populations 1.21866 0.92876 1.02800 1.02953 1.20249 0.96867 0.96412 0.91232 1.21867 1.01769 0.93922 1.02953 1.24901 0.94532 0.94076 0.87472 1.84556 1.55632 1.43936 1.12571 1.73677 1.11869 1.04464 1.15992 1.26474 0.99988 0.99171 0.90198 1.22163 1.09026 1.01391 0.94324 1.16764 0.78176 0.79852 0.86669 1.90730 1.59993 1.69481 1.21726 1.45997 1.50937 1.27903 1.11087 1.21087 0.93467 0.92409 0.88353 0.89764 1.22267 0.98840 0.99156 1.02076 1.21971 0.94699 0.98368 0.98429 0.90920 1.21418 0.97889 0.98656 0.95845 1.22108 0.96278 1.00208 0.99552 1.20706 0.97624 0.90966 0.86365 1.44002 1.25140 1.58900 1.03247 1.19119 1.31598 1.01211 0.86499 0.91847 1.25015 1.01986 0.94628 0.97893 1.70036 1.43092 1.02184 1.39173 0.86359 0.79978 0.77329 0.83348 1.21317 1.21540 1.20590 1.20992 0.90080 0.92067 0.94404 0.91923 0.90977 0.92054 0.85270 0.91921 0.92054 0.90977 0.78047 0.76196 0.92817 0.91257 0.91537 0.92190 0.93486 0.93158 0.92829 0.89555 0.96487 0.93599 0.95586 0.93590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.18 37.16 0.34 -0.72 16 2 C -0.03 -0.25 3.29 -91.77 -0.30 -0.55 16 3 C -0.15 -1.07 9.18 37.16 0.34 -0.73 16 4 C 0.05 0.60 6.06 -34.62 -0.21 0.39 16 5 O 0.09 1.07 11.06 18.65 0.21 1.27 16 6 N -0.35 -4.41 12.01 31.81 0.38 -4.03 16 7 C 0.02 0.28 11.95 -14.72 -0.18 0.10 16 8 C -0.26 -3.15 6.47 -102.89 -0.67 -3.81 16 9 C 0.60 8.03 7.78 -12.53 -0.10 7.93 16 10 O -0.54 -8.30 14.52 5.27 0.08 -8.22 16 11 N -0.71 -9.07 5.01 -54.89 -0.27 -9.34 16 12 C 0.15 2.06 2.36 -67.93 -0.16 1.90 16 13 H 0.08 1.20 7.58 -51.93 -0.39 0.81 16 14 C -0.17 -2.19 8.76 37.16 0.33 -1.86 16 15 C -0.11 -1.79 2.27 -90.50 -0.21 -2.00 16 16 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 17 C -0.10 -1.57 4.89 -26.69 -0.13 -1.70 16 18 C -0.14 -2.60 6.06 -26.83 -0.16 -2.77 16 19 C 0.17 3.88 5.28 -3.93 -0.02 3.86 16 20 N -0.59 -14.00 3.00 -172.59 -0.52 -14.52 16 21 C -0.25 -6.70 9.59 -15.06 -0.14 -6.85 16 22 H 0.06 1.62 7.89 -52.49 -0.41 1.21 16 23 C 0.00 0.10 4.91 -17.43 -0.09 0.01 16 24 N -0.90 -25.55 11.18 55.49 0.62 -24.93 16 25 Si 0.90 21.19 29.59 -169.99 -5.03 16.16 16 26 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 28 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 29 C 0.15 2.86 5.26 -3.71 -0.02 2.84 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.13 1.36 5.89 -51.93 -0.31 1.05 16 34 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.20 1.77 7.88 -52.49 -0.41 1.35 16 38 H 0.40 4.74 6.63 -40.82 -0.27 4.47 16 39 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.88 6.59 -51.93 -0.34 0.54 16 41 H 0.07 0.92 6.23 -51.93 -0.32 0.59 16 42 H 0.06 0.93 6.63 -51.93 -0.34 0.59 16 43 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.09 2.25 6.03 -51.93 -0.31 1.93 16 47 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 49 H 0.03 0.51 6.07 -51.93 -0.31 0.19 16 50 H 0.05 0.83 6.74 -51.93 -0.35 0.48 16 LS Contribution 391.13 15.07 5.89 5.89 Total: -1.00 -30.32 391.13 -8.01 -38.33 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -7.99 Total: 3.33 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: -1.37 Total: -3.95 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: 0.21 Total: -52.82 kcal Atomic # 8 Polarization: -7.23 SS G_CDS: 0.28 Total: -6.95 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.16 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.32 -8.01 -38.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025585479.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.562 kcal (2) G-P(sol) polarization free energy of solvation -30.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds