Wall clock time and date at job start Tue Mar 31 2020 19:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47137 * 2 1 4 4 C 1.50702 * 109.46932 * 119.99665 * 2 1 3 5 5 O 1.33493 * 126.83259 * 299.99997 * 4 2 1 6 6 N 1.20660 * 113.15813 * 179.97438 * 5 4 2 7 7 C 1.30013 * 112.30162 * 359.73833 * 6 5 4 8 8 C 1.37368 * 126.82629 * 120.00160 * 4 2 1 9 9 C 1.47393 * 128.56400 * 359.96104 * 8 4 2 10 10 O 1.21608 * 120.00238 * 0.02562 * 9 8 4 11 11 N 1.34780 * 119.99726 * 179.97438 * 9 8 4 12 12 C 1.46501 * 119.99880 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.47370 * 35.00066 * 12 11 9 14 14 C 1.53003 * 109.47178 * 275.00308 * 12 11 9 15 15 C 1.53000 * 109.47101 * 155.00672 * 12 11 9 16 16 H 1.09003 * 109.49496 * 304.93197 * 15 12 11 17 17 C 1.53037 * 109.52252 * 184.85529 * 15 12 11 18 18 C 1.53047 * 109.53795 * 178.66489 * 17 15 12 19 19 C 1.52754 * 109.38378 * 61.23712 * 18 17 15 20 20 N 1.46932 * 109.01099 * 305.59147 * 19 18 17 21 21 C 1.36931 * 120.62964 * 233.58902 * 20 19 18 22 22 H 1.08002 * 120.00075 * 152.35895 * 21 20 19 23 23 C 1.38813 * 120.00120 * 332.34384 * 21 20 19 24 24 N 1.31621 * 120.00027 * 342.76454 * 23 21 20 25 25 Si 1.86800 * 120.00058 * 162.47463 * 23 21 20 26 26 H 1.48507 * 109.46810 * 84.99183 * 25 23 21 27 27 H 1.48499 * 109.47476 * 204.98927 * 25 23 21 28 28 H 1.48496 * 109.47213 * 324.99479 * 25 23 21 29 29 C 1.46924 * 118.73758 * 53.30692 * 20 19 18 30 30 H 1.08997 * 109.47012 * 300.00004 * 1 2 3 31 31 H 1.08995 * 109.47154 * 60.00222 * 1 2 3 32 32 H 1.09003 * 109.46934 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47384 * 239.99604 * 2 1 3 34 34 H 1.08997 * 109.47173 * 60.00095 * 3 2 1 35 35 H 1.09001 * 109.46762 * 179.97438 * 3 2 1 36 36 H 1.08995 * 109.46917 * 299.99923 * 3 2 1 37 37 H 1.08001 * 127.33604 * 180.27507 * 7 6 5 38 38 H 0.96999 * 120.00192 * 0.02562 * 11 9 8 39 39 H 1.08997 * 109.47143 * 59.99761 * 14 12 11 40 40 H 1.08999 * 109.47187 * 180.02562 * 14 12 11 41 41 H 1.09006 * 109.47190 * 300.00041 * 14 12 11 42 42 H 1.09002 * 109.46301 * 298.67870 * 17 15 12 43 43 H 1.09001 * 109.46592 * 58.64626 * 17 15 12 44 44 H 1.08995 * 109.49608 * 181.31623 * 18 17 15 45 45 H 1.09006 * 109.49576 * 301.37707 * 18 17 15 46 46 H 1.08997 * 109.51067 * 185.71031 * 19 18 17 47 47 H 1.08997 * 109.43181 * 65.42668 * 19 18 17 48 48 H 0.96998 * 119.99813 * 179.72089 * 24 23 21 49 49 H 1.09004 * 109.58803 * 66.43223 * 29 20 19 50 50 H 1.08993 * 109.58971 * 186.86030 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.7953 -0.3752 2.5008 6 7 2.3202 -1.1183 3.2934 7 6 2.9863 -2.0706 2.7106 8 6 2.8251 -1.8315 1.2681 9 6 3.3729 -2.6076 0.1411 10 8 3.1341 -2.2704 -1.0026 11 7 4.1395 -3.6906 0.3782 12 6 4.6845 -4.4617 -0.7419 13 1 4.9288 -3.7872 -1.5626 14 6 3.6457 -5.4818 -1.2122 15 6 5.9495 -5.1937 -0.2894 16 1 6.6561 -4.4757 0.1270 17 6 6.5869 -5.9015 -1.4873 18 6 7.8703 -6.6063 -1.0418 19 6 7.5318 -7.6550 0.0160 20 7 6.7866 -7.0115 1.1066 21 6 7.2064 -7.1321 2.4044 22 1 6.9754 -6.3576 3.1209 23 6 7.9285 -8.2499 2.7994 24 7 7.9246 -9.3336 2.0524 25 14 8.9123 -8.2134 4.3869 26 1 8.0255 -8.5593 5.5268 27 1 10.0206 -9.1984 4.3053 28 1 9.4727 -6.8534 4.5908 29 6 5.5861 -6.2311 0.7776 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 3.1300 1.4424 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 3.5418 -2.8664 3.1846 38 1 4.3303 -3.9594 1.2905 39 1 2.7444 -4.9603 -1.5344 40 1 4.0513 -6.0558 -2.0452 41 1 3.4013 -6.1563 -0.3915 42 1 5.8892 -6.6369 -1.8879 43 1 6.8241 -5.1685 -2.2583 44 1 8.3360 -7.0906 -1.9001 45 1 8.5590 -5.8749 -0.6189 46 1 8.4526 -8.0872 0.4079 47 1 6.9201 -8.4379 -0.4323 48 1 8.4324 -10.1133 2.3264 49 1 4.8124 -6.8955 0.3926 50 1 5.2235 -5.7240 1.6716 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025585479.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:15 Heat of formation + Delta-G solvation = 8.384583 kcal Electronic energy + Delta-G solvation = -29895.665641 eV Core-core repulsion = 25925.408585 eV Total energy + Delta-G solvation = -3970.257057 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -46.00383 -41.05547 -39.48833 -37.11518 -36.51452 -34.98428 -34.52064 -32.56976 -32.26292 -31.71746 -29.48335 -28.08863 -27.21141 -26.38317 -25.03531 -24.30694 -23.84801 -22.42223 -21.55033 -21.32373 -20.06127 -18.99225 -18.77527 -18.54503 -17.41024 -17.07444 -16.83134 -16.15050 -16.14408 -15.73296 -15.69220 -15.52364 -15.07500 -14.84632 -14.68824 -14.54964 -14.17632 -14.06500 -13.94785 -13.67853 -13.31186 -13.06971 -13.02876 -12.90010 -12.73892 -12.66253 -12.41019 -12.29865 -12.24808 -12.03647 -11.95633 -11.85624 -11.66132 -11.50010 -11.48396 -11.27330 -11.08289 -10.98739 -10.58091 -10.49849 -10.07944 -8.63903 -7.85439 -5.29446 -0.01204 0.72467 1.46281 1.48816 1.56810 1.69429 2.11765 2.17988 2.51765 3.19783 3.22643 3.29536 3.48060 3.60303 3.85865 3.93788 4.00671 4.06326 4.08510 4.09386 4.25393 4.37445 4.44249 4.49182 4.59056 4.68796 4.71574 4.76255 4.77232 4.87595 4.89572 4.90775 4.91648 4.99459 5.06768 5.11508 5.16360 5.22212 5.30444 5.32048 5.34558 5.37304 5.47963 5.52775 5.60003 5.69980 5.81712 6.40396 6.44648 7.07775 7.11462 7.17157 7.89632 8.40557 9.20569 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015152 B = 0.002871 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.514796 B = 9749.284800 C =11092.823053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.029 4.029 3 C -0.144 4.144 4 C 0.064 3.936 5 O 0.091 5.909 6 N -0.375 5.375 7 C 0.031 3.969 8 C -0.282 4.282 9 C 0.602 3.398 10 O -0.561 6.561 11 N -0.706 5.706 12 C 0.161 3.839 13 H 0.087 0.913 14 C -0.160 4.160 15 C -0.098 4.098 16 H 0.066 0.934 17 C -0.097 4.097 18 C -0.132 4.132 19 C 0.173 3.827 20 N -0.609 5.609 21 C -0.259 4.259 22 H 0.069 0.931 23 C -0.051 4.051 24 N -0.934 5.934 25 Si 0.961 3.039 26 H -0.284 1.284 27 H -0.296 1.296 28 H -0.272 1.272 29 C 0.150 3.850 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.051 0.949 33 H 0.115 0.885 34 H 0.069 0.931 35 H 0.051 0.949 36 H 0.091 0.909 37 H 0.223 0.777 38 H 0.408 0.592 39 H 0.053 0.947 40 H 0.076 0.924 41 H 0.058 0.942 42 H 0.064 0.936 43 H 0.075 0.925 44 H 0.069 0.931 45 H 0.047 0.953 46 H 0.049 0.951 47 H -0.004 1.004 48 H 0.248 0.752 49 H 0.024 0.976 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.351 18.463 -6.650 23.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.049 4.049 3 C -0.202 4.202 4 C -0.001 4.001 5 O 0.033 5.967 6 N -0.082 5.082 7 C -0.152 4.152 8 C -0.289 4.289 9 C 0.390 3.610 10 O -0.442 6.442 11 N -0.356 5.356 12 C 0.057 3.943 13 H 0.105 0.895 14 C -0.218 4.218 15 C -0.119 4.119 16 H 0.084 0.916 17 C -0.135 4.135 18 C -0.171 4.171 19 C 0.048 3.952 20 N -0.332 5.332 21 C -0.389 4.389 22 H 0.087 0.913 23 C -0.246 4.246 24 N -0.581 5.581 25 Si 0.790 3.210 26 H -0.210 1.210 27 H -0.222 1.222 28 H -0.197 1.197 29 C 0.024 3.976 30 H 0.088 0.912 31 H 0.109 0.891 32 H 0.070 0.930 33 H 0.132 0.868 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.109 0.891 37 H 0.239 0.761 38 H 0.244 0.756 39 H 0.072 0.928 40 H 0.095 0.905 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.094 0.906 44 H 0.087 0.913 45 H 0.066 0.934 46 H 0.068 0.932 47 H 0.014 0.986 48 H 0.057 0.943 49 H 0.042 0.958 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.681 18.893 -6.138 23.567 hybrid contribution 1.212 -1.356 0.952 2.053 sum -11.468 17.537 -5.186 21.586 Atomic orbital electron populations 1.21868 0.91401 1.02610 1.04277 1.20346 0.98029 0.96995 0.89496 1.21869 1.01146 0.92880 1.04279 1.25352 0.93341 0.93552 0.87832 1.84546 1.55632 1.43858 1.12642 1.73666 1.12784 1.05144 1.16567 1.26817 0.99361 0.99149 0.89884 1.22108 1.10319 1.02181 0.94341 1.16853 0.77821 0.79702 0.86671 1.90720 1.60824 1.70047 1.22601 1.45932 1.50786 1.27746 1.11168 1.20909 0.92553 0.92309 0.88527 0.89520 1.22214 0.98712 0.98845 1.02026 1.21745 0.95535 0.97205 0.97392 0.91556 1.21411 0.96494 0.99215 0.96370 1.21942 0.97712 0.98843 0.98560 1.20526 0.95512 0.91922 0.87267 1.44264 1.26915 1.59335 1.02677 1.19492 1.30810 1.00894 0.87716 0.91334 1.25725 1.03461 0.94534 1.00899 1.70187 1.44249 1.02694 1.40927 0.85392 0.78339 0.77246 0.80055 1.21040 1.22247 1.19741 1.21137 0.88346 0.92220 0.95857 0.91226 0.89060 0.92994 0.86762 0.91223 0.93022 0.89057 0.76063 0.75589 0.92765 0.90495 0.92299 0.91704 0.90595 0.91285 0.93369 0.93231 0.98639 0.94265 0.95795 0.92862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.18 71.98 0.66 -1.15 16 2 C -0.03 -0.48 3.29 -11.54 -0.04 -0.52 16 3 C -0.14 -1.82 9.18 71.98 0.66 -1.16 16 4 C 0.06 1.33 6.06 25.48 0.15 1.49 16 5 O 0.09 1.99 11.06 76.98 0.85 2.84 16 6 N -0.37 -8.90 12.01 -54.19 -0.65 -9.55 16 7 C 0.03 0.65 11.95 87.29 1.04 1.69 16 8 C -0.28 -6.47 6.47 -18.74 -0.12 -6.59 16 9 C 0.60 15.36 7.78 86.65 0.67 16.04 16 10 O -0.56 -16.56 14.52 -4.06 -0.06 -16.62 16 11 N -0.71 -16.91 5.01 -445.82 -2.23 -19.15 16 12 C 0.16 4.08 2.36 44.99 0.11 4.19 16 13 H 0.09 2.25 7.58 -2.39 -0.02 2.23 16 14 C -0.16 -3.93 8.76 71.98 0.63 -3.30 16 15 C -0.10 -2.91 2.27 -10.72 -0.02 -2.93 16 16 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 17 C -0.10 -2.82 4.89 30.62 0.15 -2.67 16 18 C -0.13 -4.66 6.06 30.53 0.19 -4.47 16 19 C 0.17 8.09 5.28 86.22 0.46 8.54 16 20 N -0.61 -28.93 3.00 -699.94 -2.10 -31.03 16 21 C -0.26 -13.66 9.59 84.03 0.81 -12.85 16 22 H 0.07 3.47 7.89 -2.91 -0.02 3.45 16 23 C -0.05 -2.78 4.91 84.86 0.42 -2.36 16 24 N -0.93 -54.49 11.18 21.65 0.24 -54.25 16 25 Si 0.96 44.05 29.59 68.60 2.03 46.08 16 26 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 27 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 28 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 29 C 0.15 5.52 5.26 86.36 0.45 5.97 16 30 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.11 2.29 5.89 -2.39 -0.01 2.28 16 34 H 0.07 0.78 8.14 -2.39 -0.02 0.77 16 35 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.22 3.51 7.88 -2.91 -0.02 3.49 16 38 H 0.41 8.93 6.63 -92.71 -0.61 8.31 16 39 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.08 1.77 6.59 -2.39 -0.02 1.76 16 41 H 0.06 1.54 6.23 -2.38 -0.01 1.52 16 42 H 0.06 1.85 6.63 -2.39 -0.02 1.84 16 43 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 45 H 0.05 1.75 8.14 -2.38 -0.02 1.74 16 46 H 0.05 2.66 6.03 -2.39 -0.01 2.65 16 47 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 48 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 49 H 0.02 0.91 6.07 -2.39 -0.01 0.90 16 50 H 0.05 1.85 6.74 -2.39 -0.02 1.84 16 Total: -1.00 -65.76 391.13 4.63 -61.14 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: 0.33 Total: 20.62 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: 6.21 Total: -0.09 kcal Atomic # 7 Polarization: -109.23 SS G_CDS: -4.74 Total: -113.97 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: 0.79 Total: -13.78 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -65.76 4.63 -61.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025585479.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.520 kcal (2) G-P(sol) polarization free energy of solvation -65.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds