Wall clock time and date at job start Tue Mar 31 2020 19:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47701 * 2 1 4 4 C 1.50706 * 109.46970 * 120.00606 * 2 1 3 5 5 O 1.33497 * 126.82340 * 300.16294 * 4 2 1 6 6 N 1.20657 * 113.15072 * 180.31396 * 5 4 2 7 7 C 1.30014 * 112.30511 * 359.71716 * 6 5 4 8 8 C 1.37348 * 126.83291 * 119.99721 * 4 2 1 9 9 C 1.47400 * 128.56354 * 359.97438 * 8 4 2 10 10 O 1.21602 * 120.00307 * 359.69821 * 9 8 4 11 11 N 1.34780 * 120.00001 * 179.70297 * 9 8 4 12 12 C 1.46498 * 120.00111 * 179.97438 * 11 9 8 13 13 H 1.08998 * 109.47393 * 34.99295 * 12 11 9 14 14 C 1.53010 * 109.47026 * 274.99749 * 12 11 9 15 15 C 1.52997 * 109.47549 * 155.00047 * 12 11 9 16 16 H 1.08993 * 109.52774 * 60.07492 * 15 12 11 17 17 C 1.53036 * 109.50173 * 180.16380 * 15 12 11 18 18 C 1.53349 * 109.60956 * 181.32364 * 17 15 12 19 19 C 1.53194 * 109.14721 * 298.70862 * 18 17 15 20 20 N 1.46924 * 108.89447 * 54.57940 * 19 18 17 21 21 C 1.36930 * 120.63300 * 126.34039 * 20 19 18 22 22 H 1.07996 * 120.00049 * 331.82927 * 21 20 19 23 23 C 1.38816 * 120.00324 * 151.82723 * 21 20 19 24 24 N 1.31624 * 119.99356 * 343.06571 * 23 21 20 25 25 Si 1.86793 * 120.00395 * 163.06593 * 23 21 20 26 26 H 1.48500 * 109.46960 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47338 * 119.99948 * 25 23 21 28 28 H 1.48503 * 109.47085 * 239.99957 * 25 23 21 29 29 C 1.46929 * 118.73622 * 306.31812 * 20 19 18 30 30 H 1.09005 * 109.47061 * 300.00289 * 1 2 3 31 31 H 1.09005 * 109.46638 * 59.99654 * 1 2 3 32 32 H 1.08993 * 109.47562 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47061 * 239.99711 * 2 1 3 34 34 H 1.08997 * 109.47244 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.47059 * 300.00232 * 3 2 1 36 36 H 1.09009 * 109.46618 * 59.99743 * 3 2 1 37 37 H 1.08000 * 127.33635 * 180.02562 * 7 6 5 38 38 H 0.97000 * 120.00253 * 359.97438 * 11 9 8 39 39 H 1.08996 * 109.47183 * 179.97438 * 14 12 11 40 40 H 1.08998 * 109.46664 * 299.99993 * 14 12 11 41 41 H 1.08996 * 109.46887 * 59.99665 * 14 12 11 42 42 H 1.08998 * 109.45668 * 301.33137 * 17 15 12 43 43 H 1.09000 * 109.46285 * 61.30372 * 17 15 12 44 44 H 1.08999 * 109.68685 * 178.74542 * 18 17 15 45 45 H 1.08997 * 109.47481 * 58.54432 * 18 17 15 46 46 H 1.08999 * 109.58554 * 294.71486 * 19 18 17 47 47 H 1.09001 * 109.58356 * 174.43691 * 19 18 17 48 48 H 0.96997 * 119.99488 * 180.02562 * 24 23 21 49 49 H 1.09002 * 109.58736 * 173.39352 * 29 20 19 50 50 H 1.08995 * 109.58640 * 293.68128 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7106 1.2304 5 8 1.7927 -0.3772 2.5007 6 7 2.3235 -1.1161 3.2932 7 6 2.9968 -2.0634 2.7104 8 6 2.8249 -1.8316 1.2679 9 6 3.3730 -2.6076 0.1409 10 8 3.1295 -2.2736 -1.0027 11 7 4.1439 -3.6874 0.3779 12 6 4.6882 -4.4590 -0.7422 13 1 4.9276 -3.7854 -1.5651 14 6 3.6514 -5.4837 -1.2072 15 6 5.9571 -5.1857 -0.2922 16 1 5.7185 -5.8605 0.5297 17 6 6.5285 -5.9886 -1.4631 18 6 7.7820 -6.7443 -1.0058 19 6 8.8386 -5.7341 -0.5475 20 7 8.2499 -4.8622 0.4781 21 6 8.8588 -4.7065 1.6947 22 1 9.4700 -5.5002 2.0981 23 6 8.6903 -3.5285 2.4095 24 7 8.2408 -2.4499 1.8039 25 14 9.1016 -3.4742 4.2308 26 1 9.5842 -4.8084 4.6693 27 1 10.1610 -2.4613 4.4691 28 1 7.8860 -3.1100 5.0022 29 6 6.9957 -4.1601 0.1734 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 3.1301 1.4423 0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.6767 1.9563 0.8901 37 1 3.5616 -2.8526 3.1843 38 1 4.3385 -3.9537 1.2901 39 1 4.0561 -6.0575 -2.0408 40 1 3.4120 -6.1572 -0.3843 41 1 2.7474 -4.9660 -1.5277 42 1 5.7823 -6.7023 -1.8122 43 1 6.7902 -5.3103 -2.2752 44 1 8.1773 -7.3342 -1.8328 45 1 7.5263 -7.4044 -0.1770 46 1 9.1616 -5.1325 -1.3971 47 1 9.6940 -6.2645 -0.1291 48 1 8.1234 -1.6267 2.3032 49 1 6.6336 -3.6539 1.0682 50 1 7.1690 -3.4284 -0.6156 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025585480.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:19 Heat of formation + Delta-G solvation = 22.761537 kcal Electronic energy + Delta-G solvation = -30507.271869 eV Core-core repulsion = 26537.638243 eV Total energy + Delta-G solvation = -3969.633625 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.88897 -39.66953 -37.88536 -36.11852 -35.06579 -33.75894 -33.03640 -31.39390 -30.69391 -29.80965 -28.72068 -27.36260 -25.41772 -24.89317 -23.70996 -22.93371 -22.04689 -21.09835 -20.28333 -20.10180 -19.10711 -17.66766 -17.65956 -16.79474 -16.34936 -15.85605 -15.20118 -14.93052 -14.76153 -14.47153 -14.13667 -13.88571 -13.65881 -13.47979 -13.39868 -13.30914 -13.16934 -12.69447 -12.49084 -12.40224 -12.23346 -11.96628 -11.85155 -11.59024 -11.46233 -11.42528 -11.06032 -10.95071 -10.90583 -10.73894 -10.46343 -10.35959 -10.23433 -10.12494 -9.94730 -9.85297 -9.59649 -9.45951 -9.43197 -8.76007 -8.51562 -6.69772 -5.82761 -3.25629 1.11506 1.84841 2.79604 3.31577 3.34554 3.41382 3.42821 3.43550 4.25512 4.29838 4.44631 4.57623 4.74158 4.88412 4.99011 5.11560 5.25471 5.29372 5.43020 5.44445 5.49102 5.49304 5.55026 5.58732 5.61202 5.69646 5.74625 5.79107 5.81470 5.85714 6.03650 6.04557 6.10761 6.15365 6.16256 6.28332 6.39065 6.42201 6.47515 6.63104 6.72702 6.80763 6.85684 6.99448 7.30278 7.61305 7.71139 7.75754 8.19112 8.37622 8.40466 9.17244 9.80678 10.38170 11.24717 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010733 B = 0.004080 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2608.199327 B = 6860.583130 C = 8652.019786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.027 4.027 3 C -0.148 4.148 4 C 0.051 3.949 5 O 0.091 5.909 6 N -0.357 5.357 7 C 0.028 3.972 8 C -0.256 4.256 9 C 0.602 3.398 10 O -0.542 6.542 11 N -0.703 5.703 12 C 0.152 3.848 13 H 0.087 0.913 14 C -0.161 4.161 15 C -0.121 4.121 16 H 0.068 0.932 17 C -0.101 4.101 18 C -0.133 4.133 19 C 0.142 3.858 20 N -0.592 5.592 21 C -0.252 4.252 22 H 0.065 0.935 23 C 0.003 3.997 24 N -0.899 5.899 25 Si 0.897 3.103 26 H -0.277 1.277 27 H -0.290 1.290 28 H -0.289 1.289 29 C 0.180 3.820 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.130 0.870 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.201 0.799 38 H 0.402 0.598 39 H 0.067 0.933 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.051 0.949 43 H 0.056 0.944 44 H 0.051 0.949 45 H 0.056 0.944 46 H 0.016 0.984 47 H 0.051 0.949 48 H 0.252 0.748 49 H 0.088 0.912 50 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.348 0.001 -4.759 15.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.046 4.046 3 C -0.206 4.206 4 C -0.013 4.013 5 O 0.032 5.968 6 N -0.063 5.063 7 C -0.155 4.155 8 C -0.263 4.263 9 C 0.389 3.611 10 O -0.422 6.422 11 N -0.352 5.352 12 C 0.047 3.953 13 H 0.105 0.895 14 C -0.219 4.219 15 C -0.142 4.142 16 H 0.086 0.914 17 C -0.139 4.139 18 C -0.172 4.172 19 C 0.016 3.984 20 N -0.315 5.315 21 C -0.382 4.382 22 H 0.083 0.917 23 C -0.195 4.195 24 N -0.544 5.544 25 Si 0.727 3.273 26 H -0.202 1.202 27 H -0.217 1.217 28 H -0.216 1.216 29 C 0.054 3.946 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.147 0.853 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.218 0.782 38 H 0.237 0.763 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.074 0.926 44 H 0.069 0.931 45 H 0.075 0.925 46 H 0.034 0.966 47 H 0.070 0.930 48 H 0.063 0.937 49 H 0.106 0.894 50 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -14.744 0.737 -4.216 15.353 hybrid contribution 0.797 -0.496 0.969 1.350 sum -13.947 0.241 -3.247 14.322 Atomic orbital electron populations 1.21859 0.93088 1.02603 1.02823 1.20225 0.96628 0.96465 0.91330 1.21870 1.02076 0.93868 1.02763 1.24845 0.95066 0.93966 0.87422 1.84535 1.55469 1.44227 1.12591 1.73647 1.11979 1.04632 1.16027 1.26425 0.99617 0.99176 0.90295 1.22144 1.08455 1.01390 0.94315 1.16702 0.78123 0.79703 0.86608 1.90710 1.60441 1.69281 1.21738 1.45813 1.50314 1.28255 1.10807 1.21026 0.92748 0.92568 0.88916 0.89512 1.22217 0.99273 0.99060 1.01397 1.22161 0.94622 0.99236 0.98169 0.91371 1.21486 0.96969 0.98235 0.97257 1.22048 0.96988 0.98527 0.99672 1.20929 0.93840 0.91704 0.91913 1.44042 1.22381 1.52665 1.12369 1.19222 1.27405 0.97842 0.93685 0.91699 1.25029 1.01054 0.94750 0.98685 1.70054 1.50167 0.99879 1.34258 0.86307 0.77737 0.77573 0.85699 1.20244 1.21709 1.21584 1.20768 0.83691 0.90256 0.99868 0.91998 0.91101 0.92186 0.85279 0.91821 0.91072 0.92006 0.78249 0.76344 0.91370 0.92750 0.92652 0.93072 0.92561 0.93071 0.92471 0.96568 0.92997 0.93746 0.89381 0.96524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.18 37.16 0.34 -0.94 16 2 C -0.03 -0.30 3.29 -91.77 -0.30 -0.61 16 3 C -0.15 -1.45 9.18 37.16 0.34 -1.11 16 4 C 0.05 0.70 6.06 -34.63 -0.21 0.49 16 5 O 0.09 1.28 11.06 18.64 0.21 1.48 16 6 N -0.36 -5.38 12.01 31.81 0.38 -4.99 16 7 C 0.03 0.39 11.95 -14.73 -0.18 0.22 16 8 C -0.26 -3.81 6.47 -102.90 -0.67 -4.48 16 9 C 0.60 9.76 7.78 -12.53 -0.10 9.66 16 10 O -0.54 -9.71 14.52 5.28 0.08 -9.63 16 11 N -0.70 -10.82 4.47 -54.89 -0.25 -11.07 16 12 C 0.15 2.35 2.16 -67.93 -0.15 2.21 16 13 H 0.09 1.51 7.58 -51.93 -0.39 1.11 16 14 C -0.16 -2.09 9.14 37.16 0.34 -1.75 16 15 C -0.12 -2.08 1.98 -90.50 -0.18 -2.26 16 16 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 17 C -0.10 -1.59 4.86 -26.53 -0.13 -1.72 16 18 C -0.13 -2.20 6.11 -26.45 -0.16 -2.36 16 19 C 0.14 2.91 6.50 -3.71 -0.02 2.89 16 20 N -0.59 -14.30 2.99 -172.31 -0.52 -14.81 16 21 C -0.25 -6.70 9.58 -15.06 -0.14 -6.84 16 22 H 0.07 1.71 7.88 -52.49 -0.41 1.30 16 23 C 0.00 0.09 4.92 -17.43 -0.09 0.01 16 24 N -0.90 -25.35 11.20 55.49 0.62 -24.73 16 25 Si 0.90 21.16 29.59 -169.99 -5.03 16.13 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 28 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 29 C 0.18 4.03 4.34 -3.70 -0.02 4.01 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.13 1.66 5.89 -51.93 -0.31 1.35 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.56 8.14 -51.92 -0.42 0.13 16 37 H 0.20 2.39 7.88 -52.49 -0.41 1.98 16 38 H 0.40 5.82 7.78 -40.82 -0.32 5.51 16 39 H 0.07 0.81 6.41 -51.93 -0.33 0.47 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.05 0.68 6.37 -51.93 -0.33 0.35 16 43 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.05 1.05 7.93 -51.93 -0.41 0.63 16 48 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 49 H 0.09 2.16 5.57 -51.93 -0.29 1.87 16 50 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 396.21 15.07 5.97 5.97 Total: -1.00 -30.52 396.21 -8.11 -38.63 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -8.26 Total: 5.59 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: -1.31 Total: -2.57 kcal Atomic # 7 Polarization: -55.85 SS G_CDS: 0.24 Total: -55.60 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: 0.28 Total: -8.15 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.13 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.52 -8.11 -38.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025585480.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.395 kcal (2) G-P(sol) polarization free energy of solvation -30.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds