Wall clock time and date at job start Tue Mar 31 2020 19:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47701 * 2 1 4 4 C 1.50706 * 109.46970 * 120.00606 * 2 1 3 5 5 O 1.33497 * 126.82340 * 300.16294 * 4 2 1 6 6 N 1.20657 * 113.15072 * 180.31396 * 5 4 2 7 7 C 1.30014 * 112.30511 * 359.71716 * 6 5 4 8 8 C 1.37348 * 126.83291 * 119.99721 * 4 2 1 9 9 C 1.47400 * 128.56354 * 359.97438 * 8 4 2 10 10 O 1.21602 * 120.00307 * 359.69821 * 9 8 4 11 11 N 1.34780 * 120.00001 * 179.70297 * 9 8 4 12 12 C 1.46498 * 120.00111 * 179.97438 * 11 9 8 13 13 H 1.08998 * 109.47393 * 34.99295 * 12 11 9 14 14 C 1.53010 * 109.47026 * 274.99749 * 12 11 9 15 15 C 1.52997 * 109.47549 * 155.00047 * 12 11 9 16 16 H 1.08993 * 109.52774 * 60.07492 * 15 12 11 17 17 C 1.53036 * 109.50173 * 180.16380 * 15 12 11 18 18 C 1.53349 * 109.60956 * 181.32364 * 17 15 12 19 19 C 1.53194 * 109.14721 * 298.70862 * 18 17 15 20 20 N 1.46924 * 108.89447 * 54.57940 * 19 18 17 21 21 C 1.36930 * 120.63300 * 126.34039 * 20 19 18 22 22 H 1.07996 * 120.00049 * 331.82927 * 21 20 19 23 23 C 1.38816 * 120.00324 * 151.82723 * 21 20 19 24 24 N 1.31624 * 119.99356 * 343.06571 * 23 21 20 25 25 Si 1.86793 * 120.00395 * 163.06593 * 23 21 20 26 26 H 1.48500 * 109.46960 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47338 * 119.99948 * 25 23 21 28 28 H 1.48503 * 109.47085 * 239.99957 * 25 23 21 29 29 C 1.46929 * 118.73622 * 306.31812 * 20 19 18 30 30 H 1.09005 * 109.47061 * 300.00289 * 1 2 3 31 31 H 1.09005 * 109.46638 * 59.99654 * 1 2 3 32 32 H 1.08993 * 109.47562 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47061 * 239.99711 * 2 1 3 34 34 H 1.08997 * 109.47244 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.47059 * 300.00232 * 3 2 1 36 36 H 1.09009 * 109.46618 * 59.99743 * 3 2 1 37 37 H 1.08000 * 127.33635 * 180.02562 * 7 6 5 38 38 H 0.97000 * 120.00253 * 359.97438 * 11 9 8 39 39 H 1.08996 * 109.47183 * 179.97438 * 14 12 11 40 40 H 1.08998 * 109.46664 * 299.99993 * 14 12 11 41 41 H 1.08996 * 109.46887 * 59.99665 * 14 12 11 42 42 H 1.08998 * 109.45668 * 301.33137 * 17 15 12 43 43 H 1.09000 * 109.46285 * 61.30372 * 17 15 12 44 44 H 1.08999 * 109.68685 * 178.74542 * 18 17 15 45 45 H 1.08997 * 109.47481 * 58.54432 * 18 17 15 46 46 H 1.08999 * 109.58554 * 294.71486 * 19 18 17 47 47 H 1.09001 * 109.58356 * 174.43691 * 19 18 17 48 48 H 0.96997 * 119.99488 * 180.02562 * 24 23 21 49 49 H 1.09002 * 109.58736 * 173.39352 * 29 20 19 50 50 H 1.08995 * 109.58640 * 293.68128 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7106 1.2304 5 8 1.7927 -0.3772 2.5007 6 7 2.3235 -1.1161 3.2932 7 6 2.9968 -2.0634 2.7104 8 6 2.8249 -1.8316 1.2679 9 6 3.3730 -2.6076 0.1409 10 8 3.1295 -2.2736 -1.0027 11 7 4.1439 -3.6874 0.3779 12 6 4.6882 -4.4590 -0.7422 13 1 4.9276 -3.7854 -1.5651 14 6 3.6514 -5.4837 -1.2072 15 6 5.9571 -5.1857 -0.2922 16 1 5.7185 -5.8605 0.5297 17 6 6.5285 -5.9886 -1.4631 18 6 7.7820 -6.7443 -1.0058 19 6 8.8386 -5.7341 -0.5475 20 7 8.2499 -4.8622 0.4781 21 6 8.8588 -4.7065 1.6947 22 1 9.4700 -5.5002 2.0981 23 6 8.6903 -3.5285 2.4095 24 7 8.2408 -2.4499 1.8039 25 14 9.1016 -3.4742 4.2308 26 1 9.5842 -4.8084 4.6693 27 1 10.1610 -2.4613 4.4691 28 1 7.8860 -3.1100 5.0022 29 6 6.9957 -4.1601 0.1734 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 3.1301 1.4423 0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.6767 1.9563 0.8901 37 1 3.5616 -2.8526 3.1843 38 1 4.3385 -3.9537 1.2901 39 1 4.0561 -6.0575 -2.0408 40 1 3.4120 -6.1572 -0.3843 41 1 2.7474 -4.9660 -1.5277 42 1 5.7823 -6.7023 -1.8122 43 1 6.7902 -5.3103 -2.2752 44 1 8.1773 -7.3342 -1.8328 45 1 7.5263 -7.4044 -0.1770 46 1 9.1616 -5.1325 -1.3971 47 1 9.6940 -6.2645 -0.1291 48 1 8.1234 -1.6267 2.3032 49 1 6.6336 -3.6539 1.0682 50 1 7.1690 -3.4284 -0.6156 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025585480.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:18 Heat of formation + Delta-G solvation = 5.714313 kcal Electronic energy + Delta-G solvation = -30508.011092 eV Core-core repulsion = 26537.638243 eV Total energy + Delta-G solvation = -3970.372848 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -46.02449 -40.98135 -39.37862 -37.11975 -36.47010 -35.01163 -34.66218 -32.83671 -31.91050 -31.45310 -30.08489 -28.10410 -27.15511 -26.22530 -24.87513 -24.17546 -23.69084 -22.32913 -21.55831 -21.36612 -20.58033 -18.87994 -18.80158 -18.66978 -17.43954 -17.16188 -16.87030 -16.17201 -16.00569 -15.78129 -15.60451 -15.29357 -14.94163 -14.85180 -14.70445 -14.53910 -14.19611 -14.10474 -14.02381 -13.70165 -13.35999 -13.08261 -12.98396 -12.92733 -12.69405 -12.63528 -12.42850 -12.35217 -12.26878 -12.10233 -11.97283 -11.86391 -11.69847 -11.51123 -11.47857 -11.27677 -11.08327 -10.95608 -10.58901 -10.55735 -10.02333 -8.66063 -7.86836 -5.32732 -0.01632 0.69557 1.42651 1.46811 1.56028 1.68672 2.10722 2.23248 2.49635 3.16553 3.21348 3.25824 3.47837 3.57975 3.84829 3.96897 4.06727 4.06985 4.09676 4.14752 4.24061 4.31842 4.45966 4.51881 4.57232 4.68756 4.72508 4.75601 4.78555 4.87688 4.88345 4.89620 4.90620 5.03120 5.07153 5.09844 5.17386 5.22120 5.27885 5.29046 5.32928 5.40225 5.49135 5.54361 5.58755 5.68666 5.81317 6.38750 6.45297 7.06291 7.11775 7.15430 7.87426 8.39226 9.17659 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010733 B = 0.004080 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2608.199327 B = 6860.583130 C = 8652.019786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.029 4.029 3 C -0.146 4.146 4 C 0.062 3.938 5 O 0.093 5.907 6 N -0.374 5.374 7 C 0.029 3.971 8 C -0.281 4.281 9 C 0.600 3.400 10 O -0.564 6.564 11 N -0.702 5.702 12 C 0.156 3.844 13 H 0.064 0.936 14 C -0.150 4.150 15 C -0.105 4.105 16 H 0.073 0.927 17 C -0.100 4.100 18 C -0.121 4.121 19 C 0.134 3.866 20 N -0.611 5.611 21 C -0.259 4.259 22 H 0.065 0.935 23 C -0.043 4.043 24 N -0.930 5.930 25 Si 0.958 3.042 26 H -0.266 1.266 27 H -0.298 1.298 28 H -0.287 1.287 29 C 0.191 3.809 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.054 0.946 33 H 0.112 0.888 34 H 0.043 0.957 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.217 0.783 38 H 0.406 0.594 39 H 0.086 0.914 40 H 0.067 0.933 41 H 0.050 0.950 42 H 0.089 0.911 43 H 0.049 0.951 44 H 0.083 0.917 45 H 0.059 0.941 46 H 0.006 0.994 47 H 0.050 0.950 48 H 0.246 0.754 49 H 0.062 0.938 50 H -0.023 1.023 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.714 -1.482 -4.977 16.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.048 4.048 3 C -0.203 4.203 4 C -0.003 4.003 5 O 0.035 5.965 6 N -0.080 5.080 7 C -0.153 4.153 8 C -0.288 4.288 9 C 0.388 3.612 10 O -0.446 6.446 11 N -0.351 5.351 12 C 0.052 3.948 13 H 0.082 0.918 14 C -0.208 4.208 15 C -0.125 4.125 16 H 0.091 0.909 17 C -0.137 4.137 18 C -0.160 4.160 19 C 0.009 3.991 20 N -0.334 5.334 21 C -0.390 4.390 22 H 0.083 0.917 23 C -0.239 4.239 24 N -0.576 5.576 25 Si 0.786 3.214 26 H -0.190 1.190 27 H -0.226 1.226 28 H -0.214 1.214 29 C 0.065 3.935 30 H 0.089 0.911 31 H 0.111 0.889 32 H 0.073 0.927 33 H 0.130 0.870 34 H 0.062 0.938 35 H 0.113 0.887 36 H 0.090 0.910 37 H 0.234 0.766 38 H 0.241 0.759 39 H 0.105 0.895 40 H 0.086 0.914 41 H 0.069 0.931 42 H 0.107 0.893 43 H 0.068 0.932 44 H 0.101 0.899 45 H 0.078 0.922 46 H 0.024 0.976 47 H 0.068 0.932 48 H 0.056 0.944 49 H 0.081 0.919 50 H -0.005 1.005 Dipole moment (debyes) X Y Z Total from point charges -16.111 -0.782 -4.443 16.730 hybrid contribution 1.310 -0.002 0.980 1.636 sum -14.801 -0.784 -3.462 15.221 Atomic orbital electron populations 1.21851 0.90806 1.02780 1.04356 1.20346 0.98437 0.96708 0.89320 1.21879 1.00793 0.93179 1.04441 1.25353 0.93740 0.93294 0.87878 1.84520 1.55339 1.44021 1.12613 1.73625 1.12730 1.05132 1.16548 1.26717 0.99257 0.99296 0.90073 1.22140 1.09897 1.02445 0.94334 1.16860 0.77984 0.79712 0.86671 1.90691 1.61421 1.69849 1.22595 1.45833 1.49967 1.28194 1.11073 1.20966 0.93030 0.92678 0.88171 0.91800 1.22123 0.97965 0.98307 1.02402 1.21924 0.93614 0.97886 0.99123 0.90871 1.21515 0.97549 0.98563 0.96114 1.21930 0.95865 0.97439 1.00798 1.21128 0.95340 0.91972 0.90688 1.44350 1.23255 1.53182 1.12643 1.19519 1.26980 0.97683 0.94789 0.91739 1.25680 1.01621 0.94437 1.02174 1.70219 1.51808 1.00187 1.35402 0.85355 0.77111 0.77574 0.81327 1.19048 1.22561 1.21399 1.20538 0.84639 0.90853 0.97440 0.91104 0.88930 0.92697 0.87005 0.93820 0.88726 0.91027 0.76638 0.75896 0.89541 0.91357 0.93126 0.89293 0.93170 0.89853 0.92236 0.97592 0.93158 0.94446 0.91932 1.00480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.18 71.98 0.66 -1.57 16 2 C -0.03 -0.63 3.29 -11.54 -0.04 -0.67 16 3 C -0.15 -2.73 9.18 71.98 0.66 -2.07 16 4 C 0.06 1.68 6.06 25.48 0.15 1.84 16 5 O 0.09 2.58 11.06 76.95 0.85 3.43 16 6 N -0.37 -11.19 12.01 -54.19 -0.65 -11.84 16 7 C 0.03 0.83 11.95 87.29 1.04 1.88 16 8 C -0.28 -8.51 6.47 -18.75 -0.12 -8.64 16 9 C 0.60 19.92 7.78 86.66 0.67 20.59 16 10 O -0.56 -20.73 14.52 -4.04 -0.06 -20.79 16 11 N -0.70 -21.86 4.47 -445.82 -1.99 -23.85 16 12 C 0.16 4.76 2.16 44.99 0.10 4.86 16 13 H 0.06 2.26 7.58 -2.39 -0.02 2.24 16 14 C -0.15 -3.53 9.14 71.99 0.66 -2.87 16 15 C -0.10 -3.51 1.98 -10.72 -0.02 -3.54 16 16 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 17 C -0.10 -2.87 4.86 30.72 0.15 -2.72 16 18 C -0.12 -3.69 6.11 30.78 0.19 -3.50 16 19 C 0.13 5.43 6.50 86.36 0.56 5.99 16 20 N -0.61 -29.88 2.99 -699.08 -2.09 -31.97 16 21 C -0.26 -13.94 9.58 84.04 0.81 -13.14 16 22 H 0.06 3.41 7.88 -2.91 -0.02 3.38 16 23 C -0.04 -2.37 4.92 84.86 0.42 -1.95 16 24 N -0.93 -54.18 11.20 21.65 0.24 -53.93 16 25 Si 0.96 44.03 29.59 68.60 2.03 46.06 16 26 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 27 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 28 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 29 C 0.19 8.78 4.34 86.37 0.37 9.15 16 30 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 32 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.11 2.90 5.89 -2.38 -0.01 2.89 16 34 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 37 H 0.22 5.17 7.88 -2.91 -0.02 5.15 16 38 H 0.41 11.89 7.78 -92.71 -0.72 11.17 16 39 H 0.09 1.72 6.41 -2.39 -0.02 1.71 16 40 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.05 1.26 8.14 -2.39 -0.02 1.25 16 42 H 0.09 1.97 6.37 -2.39 -0.02 1.95 16 43 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 46 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 47 H 0.05 2.00 7.93 -2.39 -0.02 1.98 16 48 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 49 H 0.06 3.18 5.57 -2.39 -0.01 3.17 16 50 H -0.02 -1.21 8.14 -2.39 -0.02 -1.23 16 Total: -1.00 -67.85 396.21 4.81 -63.05 By element: Atomic # 1 Polarization: 25.99 SS G_CDS: 0.22 Total: 26.21 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: 6.26 Total: 3.65 kcal Atomic # 7 Polarization: -117.11 SS G_CDS: -4.50 Total: -121.60 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: 0.79 Total: -17.36 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -67.85 4.81 -63.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025585480.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.760 kcal (2) G-P(sol) polarization free energy of solvation -67.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds