Wall clock time and date at job start Tue Mar 31 2020 19:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47053 * 2 1 4 4 C 1.50694 * 109.47132 * 120.00050 * 2 1 3 5 5 O 1.33493 * 126.82943 * 300.00151 * 4 2 1 6 6 N 1.20659 * 113.15902 * 180.02562 * 5 4 2 7 7 C 1.30015 * 112.29853 * 359.72913 * 6 5 4 8 8 C 1.37357 * 126.82950 * 120.00008 * 4 2 1 9 9 C 1.47402 * 128.56542 * 359.96327 * 8 4 2 10 10 O 1.21605 * 119.99767 * 0.02562 * 9 8 4 11 11 N 1.34779 * 119.99720 * 179.97438 * 9 8 4 12 12 C 1.46498 * 119.99718 * 180.02562 * 11 9 8 13 13 H 1.09011 * 109.47032 * 325.00430 * 12 11 9 14 14 C 1.53000 * 109.47354 * 85.00322 * 12 11 9 15 15 C 1.53005 * 109.47366 * 205.00681 * 12 11 9 16 16 H 1.09000 * 109.51848 * 300.07753 * 15 12 11 17 17 C 1.53036 * 109.49940 * 180.02562 * 15 12 11 18 18 C 1.53037 * 109.53839 * 178.67965 * 17 15 12 19 19 C 1.53196 * 109.31160 * 61.36690 * 18 17 15 20 20 N 1.46932 * 108.77447 * 305.36348 * 19 18 17 21 21 C 1.36933 * 120.63227 * 233.58897 * 20 19 18 22 22 H 1.08000 * 120.00106 * 151.83446 * 21 20 19 23 23 C 1.38815 * 119.99801 * 331.83419 * 21 20 19 24 24 N 1.31612 * 120.00090 * 343.07689 * 23 21 20 25 25 Si 1.86795 * 119.99858 * 163.07634 * 23 21 20 26 26 H 1.48497 * 109.47398 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.47290 * 120.00195 * 25 23 21 28 28 H 1.48499 * 109.47370 * 239.99780 * 25 23 21 29 29 C 1.46924 * 118.73801 * 53.60831 * 20 19 18 30 30 H 1.08996 * 109.47184 * 300.00055 * 1 2 3 31 31 H 1.09003 * 109.46727 * 59.99881 * 1 2 3 32 32 H 1.08997 * 109.46896 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.47084 * 239.99985 * 2 1 3 34 34 H 1.08996 * 109.47171 * 59.99937 * 3 2 1 35 35 H 1.09005 * 109.47084 * 180.02562 * 3 2 1 36 36 H 1.09000 * 109.47011 * 299.99936 * 3 2 1 37 37 H 1.08003 * 127.33376 * 180.27717 * 7 6 5 38 38 H 0.96999 * 120.00483 * 0.02562 * 11 9 8 39 39 H 1.09002 * 109.47295 * 180.02562 * 14 12 11 40 40 H 1.09001 * 109.47006 * 300.00044 * 14 12 11 41 41 H 1.09000 * 109.46492 * 59.99894 * 14 12 11 42 42 H 1.09003 * 109.45790 * 298.70122 * 17 15 12 43 43 H 1.09000 * 109.45981 * 58.67040 * 17 15 12 44 44 H 1.08996 * 109.49853 * 181.31152 * 18 17 15 45 45 H 1.09000 * 109.49859 * 301.38163 * 18 17 15 46 46 H 1.08995 * 109.58928 * 65.14840 * 19 18 17 47 47 H 1.09000 * 109.58658 * 185.58063 * 19 18 17 48 48 H 0.97004 * 120.00272 * 180.02562 * 24 23 21 49 49 H 1.08993 * 109.59213 * 186.60405 * 29 20 19 50 50 H 1.09005 * 109.58716 * 66.17778 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 1.7953 -0.3753 2.5007 6 7 2.3210 -1.1178 3.2933 7 6 2.9877 -2.0697 2.7104 8 6 2.8251 -1.8315 1.2679 9 6 3.3730 -2.6076 0.1409 10 8 3.1341 -2.2702 -1.0027 11 7 4.1395 -3.6905 0.3780 12 6 4.6845 -4.4616 -0.7421 13 1 3.9665 -4.4680 -1.5623 14 6 5.9917 -3.8215 -1.2137 15 6 4.9543 -5.8980 -0.2892 16 1 5.6712 -5.8924 0.5319 17 6 5.5243 -6.7038 -1.4587 18 6 5.8252 -8.1318 -0.9979 19 6 4.5257 -8.8002 -0.5380 20 7 3.8963 -7.9555 0.4864 21 6 3.5501 -8.4768 1.7043 22 1 3.5250 -7.8406 2.5767 23 6 3.2314 -9.8231 1.8178 24 7 2.9355 -10.5222 0.7427 25 14 3.2225 -10.6425 3.4964 26 1 3.5880 -9.6465 4.5354 27 1 1.8665 -11.1780 3.7786 28 1 4.2064 -11.7547 3.5096 29 6 3.6450 -6.5410 0.1788 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 3.1301 1.4425 -0.0005 36 1 1.6767 1.9563 -0.8900 37 1 3.5439 -2.8650 3.1844 38 1 4.3304 -3.9594 1.2902 39 1 6.3970 -4.3950 -2.0474 40 1 5.7995 -2.7983 -1.5364 41 1 6.7096 -3.8151 -0.3936 42 1 4.7971 -6.7298 -2.2703 43 1 6.4433 -6.2343 -1.8095 44 1 6.2528 -8.6985 -1.8249 45 1 6.5339 -8.1052 -0.1702 46 1 3.8507 -8.9094 -1.3867 47 1 4.7483 -9.7806 -0.1168 48 1 2.7124 -11.4629 0.8219 49 1 3.2864 -6.0307 1.0727 50 1 2.8981 -6.4660 -0.6117 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025585481.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:23 Heat of formation + Delta-G solvation = 22.888578 kcal Electronic energy + Delta-G solvation = -29957.760456 eV Core-core repulsion = 25988.132339 eV Total energy + Delta-G solvation = -3969.628116 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -45.07942 -39.87139 -37.98108 -36.26142 -35.21599 -33.95121 -32.98215 -31.32135 -30.71636 -30.43200 -28.52497 -27.49139 -25.49293 -25.00057 -23.87005 -23.05154 -21.97534 -21.25074 -20.49435 -20.25332 -19.16563 -17.85019 -17.84376 -16.80060 -16.48175 -16.00776 -15.29305 -15.05267 -14.75112 -14.69191 -14.32208 -14.03466 -13.72975 -13.60139 -13.52823 -13.41819 -13.20961 -12.70028 -12.52486 -12.49207 -12.32052 -12.00838 -11.83907 -11.73327 -11.59784 -11.55893 -11.14591 -11.06454 -10.99838 -10.69747 -10.56575 -10.44401 -10.24005 -10.18065 -10.03921 -9.91815 -9.65122 -9.58693 -9.45005 -8.96824 -8.49330 -6.69056 -5.81470 -3.24537 0.92209 1.64764 2.60623 3.15539 3.19889 3.34297 3.42411 3.43969 4.06114 4.10227 4.37989 4.45138 4.59410 4.74475 4.86472 4.96754 5.08981 5.22105 5.31064 5.33274 5.34034 5.38359 5.48895 5.51804 5.55381 5.57135 5.61729 5.71542 5.73922 5.77261 5.90393 5.96263 6.03038 6.04023 6.08753 6.26544 6.31681 6.39899 6.50239 6.58894 6.68214 6.77410 6.84538 6.95040 7.37898 7.48755 7.65345 7.76241 7.99973 8.16255 8.42149 9.18492 9.81994 10.38930 11.26754 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012940 B = 0.003077 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.378347 B = 9098.191368 C =10420.310127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.029 4.029 3 C -0.147 4.147 4 C 0.055 3.945 5 O 0.092 5.908 6 N -0.355 5.355 7 C 0.025 3.975 8 C -0.261 4.261 9 C 0.600 3.400 10 O -0.538 6.538 11 N -0.708 5.708 12 C 0.149 3.851 13 H 0.089 0.911 14 C -0.161 4.161 15 C -0.111 4.111 16 H 0.072 0.928 17 C -0.101 4.101 18 C -0.142 4.142 19 C 0.169 3.831 20 N -0.591 5.591 21 C -0.253 4.253 22 H 0.065 0.935 23 C 0.003 3.997 24 N -0.901 5.901 25 Si 0.901 3.099 26 H -0.278 1.278 27 H -0.290 1.290 28 H -0.289 1.289 29 C 0.155 3.845 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.130 0.870 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.202 0.798 38 H 0.401 0.599 39 H 0.070 0.930 40 H 0.055 0.945 41 H 0.054 0.946 42 H 0.056 0.944 43 H 0.051 0.949 44 H 0.049 0.951 45 H 0.053 0.947 46 H 0.017 0.983 47 H 0.086 0.914 48 H 0.253 0.747 49 H 0.050 0.950 50 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.156 20.189 -2.737 20.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.048 4.048 3 C -0.204 4.204 4 C -0.009 4.009 5 O 0.033 5.967 6 N -0.061 5.061 7 C -0.158 4.158 8 C -0.268 4.268 9 C 0.387 3.613 10 O -0.417 6.417 11 N -0.357 5.357 12 C 0.044 3.956 13 H 0.107 0.893 14 C -0.220 4.220 15 C -0.132 4.132 16 H 0.090 0.910 17 C -0.139 4.139 18 C -0.181 4.181 19 C 0.043 3.957 20 N -0.313 5.313 21 C -0.383 4.383 22 H 0.082 0.918 23 C -0.196 4.196 24 N -0.545 5.545 25 Si 0.731 3.269 26 H -0.203 1.203 27 H -0.217 1.217 28 H -0.216 1.216 29 C 0.029 3.971 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.147 0.853 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.219 0.781 38 H 0.236 0.764 39 H 0.089 0.911 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.072 0.928 46 H 0.035 0.965 47 H 0.104 0.896 48 H 0.063 0.937 49 H 0.068 0.932 50 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 1.686 20.576 -2.275 20.770 hybrid contribution 0.410 -1.247 0.829 1.553 sum 2.095 19.329 -1.446 19.496 Atomic orbital electron populations 1.21872 0.92809 1.02971 1.02925 1.20253 0.96956 0.96332 0.91237 1.21865 1.01639 0.93986 1.02949 1.24895 0.94414 0.94147 0.87446 1.84552 1.55595 1.43974 1.12588 1.73671 1.11739 1.04613 1.16040 1.26435 1.00097 0.99082 0.90208 1.22153 1.09103 1.01280 0.94301 1.16739 0.77894 0.80034 0.86672 1.90734 1.60236 1.69026 1.21736 1.45890 1.51078 1.27949 1.10817 1.21110 0.95276 0.90366 0.88798 0.89331 1.22206 0.97196 1.00982 1.01579 1.21984 1.00901 0.91452 0.98882 0.90994 1.21440 0.99431 0.96222 0.96776 1.22174 1.01042 0.95342 0.99549 1.20795 0.88927 0.95171 0.90783 1.44043 1.68844 1.04338 1.14119 1.19185 1.40503 0.93261 0.85342 0.91777 1.25042 0.99305 0.98344 0.96883 1.70043 1.49014 1.08149 1.27306 0.86253 0.77290 0.79448 0.83952 1.20282 1.21725 1.21553 1.20858 0.92101 0.86639 0.97537 0.91931 0.90972 0.91907 0.85252 0.91938 0.92145 0.90992 0.78145 0.76433 0.91143 0.92597 0.92650 0.92547 0.93083 0.93217 0.92785 0.96485 0.89613 0.93670 0.93177 0.96536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.18 37.16 0.34 -0.84 16 2 C -0.03 -0.27 3.29 -91.77 -0.30 -0.57 16 3 C -0.15 -1.08 9.18 37.16 0.34 -0.74 16 4 C 0.06 0.63 6.06 -34.63 -0.21 0.42 16 5 O 0.09 1.09 11.06 18.65 0.21 1.30 16 6 N -0.36 -4.48 12.01 31.81 0.38 -4.09 16 7 C 0.02 0.28 11.95 -14.72 -0.18 0.10 16 8 C -0.26 -3.21 6.47 -102.89 -0.67 -3.87 16 9 C 0.60 8.19 7.78 -12.53 -0.10 8.09 16 10 O -0.54 -8.50 14.52 5.27 0.08 -8.42 16 11 N -0.71 -8.96 4.48 -54.88 -0.25 -9.20 16 12 C 0.15 2.02 2.16 -67.93 -0.15 1.87 16 13 H 0.09 1.35 7.58 -51.92 -0.39 0.96 16 14 C -0.16 -1.90 9.13 37.16 0.34 -1.56 16 15 C -0.11 -1.74 1.97 -90.50 -0.18 -1.92 16 16 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 17 C -0.10 -1.58 4.85 -26.69 -0.13 -1.71 16 18 C -0.14 -2.59 6.08 -26.61 -0.16 -2.75 16 19 C 0.17 3.94 5.30 -3.71 -0.02 3.92 16 20 N -0.59 -14.33 2.99 -172.32 -0.52 -14.84 16 21 C -0.25 -6.77 9.58 -15.06 -0.14 -6.92 16 22 H 0.06 1.68 7.88 -52.49 -0.41 1.26 16 23 C 0.00 0.08 4.92 -17.43 -0.09 0.00 16 24 N -0.90 -25.90 11.20 55.49 0.62 -25.28 16 25 Si 0.90 21.39 29.59 -169.99 -5.03 16.36 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 29 C 0.16 3.09 5.56 -3.71 -0.02 3.07 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.13 1.42 5.89 -51.93 -0.31 1.12 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.20 1.71 7.88 -52.48 -0.41 1.29 16 38 H 0.40 4.46 7.79 -40.82 -0.32 4.14 16 39 H 0.07 0.78 6.40 -51.93 -0.33 0.45 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.05 0.68 6.36 -51.93 -0.33 0.35 16 44 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.09 2.25 6.06 -51.93 -0.31 1.94 16 48 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 49 H 0.05 0.97 7.45 -51.93 -0.39 0.58 16 50 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 LS Contribution 396.20 15.07 5.97 5.97 Total: -1.00 -31.00 396.20 -8.11 -39.11 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -8.26 Total: 2.50 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -1.32 Total: -3.40 kcal Atomic # 7 Polarization: -53.66 SS G_CDS: 0.24 Total: -53.42 kcal Atomic # 8 Polarization: -7.41 SS G_CDS: 0.28 Total: -7.12 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.00 -8.11 -39.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025585481.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.999 kcal (2) G-P(sol) polarization free energy of solvation -30.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds