Wall clock time and date at job start Tue Mar 31 2020 19:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47053 * 2 1 4 4 C 1.50694 * 109.47132 * 120.00050 * 2 1 3 5 5 O 1.33493 * 126.82943 * 300.00151 * 4 2 1 6 6 N 1.20659 * 113.15902 * 180.02562 * 5 4 2 7 7 C 1.30015 * 112.29853 * 359.72913 * 6 5 4 8 8 C 1.37357 * 126.82950 * 120.00008 * 4 2 1 9 9 C 1.47402 * 128.56542 * 359.96327 * 8 4 2 10 10 O 1.21605 * 119.99767 * 0.02562 * 9 8 4 11 11 N 1.34779 * 119.99720 * 179.97438 * 9 8 4 12 12 C 1.46498 * 119.99718 * 180.02562 * 11 9 8 13 13 H 1.09011 * 109.47032 * 325.00430 * 12 11 9 14 14 C 1.53000 * 109.47354 * 85.00322 * 12 11 9 15 15 C 1.53005 * 109.47366 * 205.00681 * 12 11 9 16 16 H 1.09000 * 109.51848 * 300.07753 * 15 12 11 17 17 C 1.53036 * 109.49940 * 180.02562 * 15 12 11 18 18 C 1.53037 * 109.53839 * 178.67965 * 17 15 12 19 19 C 1.53196 * 109.31160 * 61.36690 * 18 17 15 20 20 N 1.46932 * 108.77447 * 305.36348 * 19 18 17 21 21 C 1.36933 * 120.63227 * 233.58897 * 20 19 18 22 22 H 1.08000 * 120.00106 * 151.83446 * 21 20 19 23 23 C 1.38815 * 119.99801 * 331.83419 * 21 20 19 24 24 N 1.31612 * 120.00090 * 343.07689 * 23 21 20 25 25 Si 1.86795 * 119.99858 * 163.07634 * 23 21 20 26 26 H 1.48497 * 109.47398 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.47290 * 120.00195 * 25 23 21 28 28 H 1.48499 * 109.47370 * 239.99780 * 25 23 21 29 29 C 1.46924 * 118.73801 * 53.60831 * 20 19 18 30 30 H 1.08996 * 109.47184 * 300.00055 * 1 2 3 31 31 H 1.09003 * 109.46727 * 59.99881 * 1 2 3 32 32 H 1.08997 * 109.46896 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.47084 * 239.99985 * 2 1 3 34 34 H 1.08996 * 109.47171 * 59.99937 * 3 2 1 35 35 H 1.09005 * 109.47084 * 180.02562 * 3 2 1 36 36 H 1.09000 * 109.47011 * 299.99936 * 3 2 1 37 37 H 1.08003 * 127.33376 * 180.27717 * 7 6 5 38 38 H 0.96999 * 120.00483 * 0.02562 * 11 9 8 39 39 H 1.09002 * 109.47295 * 180.02562 * 14 12 11 40 40 H 1.09001 * 109.47006 * 300.00044 * 14 12 11 41 41 H 1.09000 * 109.46492 * 59.99894 * 14 12 11 42 42 H 1.09003 * 109.45790 * 298.70122 * 17 15 12 43 43 H 1.09000 * 109.45981 * 58.67040 * 17 15 12 44 44 H 1.08996 * 109.49853 * 181.31152 * 18 17 15 45 45 H 1.09000 * 109.49859 * 301.38163 * 18 17 15 46 46 H 1.08995 * 109.58928 * 65.14840 * 19 18 17 47 47 H 1.09000 * 109.58658 * 185.58063 * 19 18 17 48 48 H 0.97004 * 120.00272 * 180.02562 * 24 23 21 49 49 H 1.08993 * 109.59213 * 186.60405 * 29 20 19 50 50 H 1.09005 * 109.58716 * 66.17778 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 1.7953 -0.3753 2.5007 6 7 2.3210 -1.1178 3.2933 7 6 2.9877 -2.0697 2.7104 8 6 2.8251 -1.8315 1.2679 9 6 3.3730 -2.6076 0.1409 10 8 3.1341 -2.2702 -1.0027 11 7 4.1395 -3.6905 0.3780 12 6 4.6845 -4.4616 -0.7421 13 1 3.9665 -4.4680 -1.5623 14 6 5.9917 -3.8215 -1.2137 15 6 4.9543 -5.8980 -0.2892 16 1 5.6712 -5.8924 0.5319 17 6 5.5243 -6.7038 -1.4587 18 6 5.8252 -8.1318 -0.9979 19 6 4.5257 -8.8002 -0.5380 20 7 3.8963 -7.9555 0.4864 21 6 3.5501 -8.4768 1.7043 22 1 3.5250 -7.8406 2.5767 23 6 3.2314 -9.8231 1.8178 24 7 2.9355 -10.5222 0.7427 25 14 3.2225 -10.6425 3.4964 26 1 3.5880 -9.6465 4.5354 27 1 1.8665 -11.1780 3.7786 28 1 4.2064 -11.7547 3.5096 29 6 3.6450 -6.5410 0.1788 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 3.1301 1.4425 -0.0005 36 1 1.6767 1.9563 -0.8900 37 1 3.5439 -2.8650 3.1844 38 1 4.3304 -3.9594 1.2902 39 1 6.3970 -4.3950 -2.0474 40 1 5.7995 -2.7983 -1.5364 41 1 6.7096 -3.8151 -0.3936 42 1 4.7971 -6.7298 -2.2703 43 1 6.4433 -6.2343 -1.8095 44 1 6.2528 -8.6985 -1.8249 45 1 6.5339 -8.1052 -0.1702 46 1 3.8507 -8.9094 -1.3867 47 1 4.7483 -9.7806 -0.1168 48 1 2.7124 -11.4629 0.8219 49 1 3.2864 -6.0307 1.0727 50 1 2.8981 -6.4660 -0.6117 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025585481.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:22 Heat of formation + Delta-G solvation = 5.373201 kcal Electronic energy + Delta-G solvation = -29958.519979 eV Core-core repulsion = 25988.132339 eV Total energy + Delta-G solvation = -3970.387640 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -45.99287 -41.00459 -39.40666 -37.13024 -36.53243 -34.98351 -34.52116 -32.62902 -32.20166 -31.66317 -29.88101 -28.09755 -27.17828 -26.21771 -24.87761 -24.20410 -23.59889 -22.37166 -21.57985 -21.40004 -20.59096 -18.89957 -18.76598 -18.61220 -17.39970 -17.17278 -16.82334 -16.18027 -16.00514 -15.82645 -15.59890 -15.37619 -14.95754 -14.84507 -14.71109 -14.52539 -14.19146 -14.10762 -14.00738 -13.69949 -13.26219 -13.07891 -13.00195 -12.91221 -12.79881 -12.57768 -12.41408 -12.25854 -12.25172 -12.20845 -11.95279 -11.85257 -11.75425 -11.50289 -11.47574 -11.27578 -11.11628 -10.94742 -10.57741 -10.54189 -10.05949 -8.67085 -7.87104 -5.33123 -0.00690 0.73663 1.45172 1.47360 1.57218 1.69344 2.12484 2.19904 2.50242 3.20730 3.23259 3.27653 3.48394 3.55969 3.85949 3.94104 4.02282 4.05669 4.07751 4.10644 4.25724 4.37168 4.46826 4.52327 4.59199 4.66335 4.76196 4.76917 4.78797 4.87360 4.88642 4.89819 4.90455 4.96969 5.06933 5.10615 5.13259 5.24790 5.29215 5.29451 5.33348 5.36558 5.48077 5.53316 5.59084 5.68066 5.79731 6.38643 6.46715 7.08956 7.13020 7.15050 7.86567 8.38513 9.19031 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012940 B = 0.003077 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.378347 B = 9098.191368 C =10420.310127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.030 4.030 3 C -0.142 4.142 4 C 0.063 3.937 5 O 0.089 5.911 6 N -0.375 5.375 7 C 0.033 3.967 8 C -0.282 4.282 9 C 0.601 3.399 10 O -0.564 6.564 11 N -0.703 5.703 12 C 0.157 3.843 13 H 0.070 0.930 14 C -0.153 4.153 15 C -0.094 4.094 16 H 0.080 0.920 17 C -0.097 4.097 18 C -0.130 4.130 19 C 0.172 3.828 20 N -0.609 5.609 21 C -0.259 4.259 22 H 0.070 0.930 23 C -0.052 4.052 24 N -0.936 5.936 25 Si 0.965 3.035 26 H -0.263 1.263 27 H -0.296 1.296 28 H -0.291 1.291 29 C 0.155 3.845 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.047 0.953 33 H 0.113 0.887 34 H 0.069 0.931 35 H 0.053 0.947 36 H 0.090 0.910 37 H 0.226 0.774 38 H 0.410 0.590 39 H 0.082 0.918 40 H 0.051 0.949 41 H 0.068 0.932 42 H 0.050 0.950 43 H 0.089 0.911 44 H 0.069 0.931 45 H 0.055 0.945 46 H -0.011 1.011 47 H 0.050 0.950 48 H 0.249 0.751 49 H 0.052 0.948 50 H -0.004 1.004 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.525 22.068 -2.229 22.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.049 4.049 3 C -0.200 4.200 4 C -0.002 4.002 5 O 0.032 5.968 6 N -0.082 5.082 7 C -0.150 4.150 8 C -0.290 4.290 9 C 0.388 3.612 10 O -0.445 6.445 11 N -0.353 5.353 12 C 0.053 3.947 13 H 0.088 0.912 14 C -0.211 4.211 15 C -0.115 4.115 16 H 0.098 0.902 17 C -0.135 4.135 18 C -0.169 4.169 19 C 0.047 3.953 20 N -0.332 5.332 21 C -0.389 4.389 22 H 0.087 0.913 23 C -0.248 4.248 24 N -0.583 5.583 25 Si 0.793 3.207 26 H -0.188 1.188 27 H -0.223 1.223 28 H -0.217 1.217 29 C 0.029 3.971 30 H 0.089 0.911 31 H 0.109 0.891 32 H 0.066 0.934 33 H 0.131 0.869 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.108 0.892 37 H 0.243 0.757 38 H 0.246 0.754 39 H 0.101 0.899 40 H 0.070 0.930 41 H 0.087 0.913 42 H 0.069 0.931 43 H 0.107 0.893 44 H 0.087 0.913 45 H 0.074 0.926 46 H 0.007 0.993 47 H 0.069 0.931 48 H 0.058 0.942 49 H 0.071 0.929 50 H 0.014 0.986 Dipole moment (debyes) X Y Z Total from point charges 3.066 22.495 -1.755 22.771 hybrid contribution -0.086 -1.808 0.634 1.917 sum 2.980 20.688 -1.121 20.932 Atomic orbital electron populations 1.21875 0.91696 1.02417 1.04309 1.20336 0.97825 0.97209 0.89555 1.21857 1.01241 0.92613 1.04257 1.25326 0.93345 0.93723 0.87818 1.84541 1.55666 1.43966 1.12606 1.73658 1.12679 1.05330 1.16570 1.26834 0.99362 0.99058 0.89711 1.22119 1.10372 1.02004 0.94462 1.16867 0.77591 0.80075 0.86636 1.90723 1.61179 1.69779 1.22790 1.45826 1.50805 1.27562 1.11126 1.20937 0.96080 0.89305 0.88409 0.91181 1.22135 0.95991 1.00596 1.02397 1.21754 0.98263 0.92271 0.99185 0.90161 1.21443 1.01044 0.94633 0.96398 1.22000 0.97865 0.96811 1.00217 1.20639 0.90879 0.94384 0.89428 1.44316 1.69218 1.05957 1.13663 1.19560 1.39253 0.93559 0.86577 0.91256 1.25800 0.99792 0.99098 1.00060 1.70202 1.50735 1.08011 1.29319 0.85247 0.76630 0.78436 0.80389 1.18756 1.22311 1.21742 1.20970 0.94171 0.84823 0.97129 0.91108 0.89058 0.93405 0.86920 0.91174 0.92749 0.89153 0.75723 0.75408 0.89946 0.93033 0.91284 0.93099 0.89288 0.91287 0.92596 0.99269 0.93118 0.94231 0.92906 0.98556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.18 71.98 0.66 -1.50 16 2 C -0.03 -0.53 3.29 -11.54 -0.04 -0.57 16 3 C -0.14 -1.86 9.18 71.98 0.66 -1.20 16 4 C 0.06 1.38 6.06 25.48 0.15 1.53 16 5 O 0.09 2.03 11.06 76.98 0.85 2.88 16 6 N -0.38 -9.05 12.01 -54.19 -0.65 -9.70 16 7 C 0.03 0.70 11.95 87.29 1.04 1.75 16 8 C -0.28 -6.71 6.47 -18.74 -0.12 -6.83 16 9 C 0.60 15.96 7.78 86.66 0.67 16.64 16 10 O -0.56 -17.67 14.52 -4.05 -0.06 -17.73 16 11 N -0.70 -16.78 4.48 -445.81 -2.00 -18.78 16 12 C 0.16 3.98 2.16 44.99 0.10 4.08 16 13 H 0.07 2.08 7.58 -2.38 -0.02 2.06 16 14 C -0.15 -3.13 9.13 71.98 0.66 -2.47 16 15 C -0.09 -2.77 1.97 -10.71 -0.02 -2.79 16 16 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 17 C -0.10 -2.81 4.85 30.62 0.15 -2.67 16 18 C -0.13 -4.56 6.08 30.67 0.19 -4.37 16 19 C 0.17 8.21 5.30 86.36 0.46 8.67 16 20 N -0.61 -29.80 2.99 -699.09 -2.09 -31.89 16 21 C -0.26 -13.95 9.58 84.03 0.81 -13.14 16 22 H 0.07 3.58 7.88 -2.91 -0.02 3.56 16 23 C -0.05 -2.90 4.92 84.86 0.42 -2.48 16 24 N -0.94 -55.58 11.20 21.65 0.24 -55.34 16 25 Si 0.96 44.45 29.59 68.60 2.03 46.48 16 26 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 27 H -0.30 -13.79 7.11 99.48 0.71 -13.09 16 28 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 29 C 0.15 6.13 5.56 86.36 0.48 6.61 16 30 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.11 2.46 5.89 -2.38 -0.01 2.45 16 34 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 36 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.23 3.35 7.88 -2.91 -0.02 3.32 16 38 H 0.41 8.31 7.79 -92.71 -0.72 7.59 16 39 H 0.08 1.50 6.40 -2.39 -0.02 1.48 16 40 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.09 1.98 6.36 -2.39 -0.02 1.97 16 44 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 45 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 46 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 47 H 0.05 2.75 6.06 -2.39 -0.01 2.74 16 48 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 49 H 0.05 2.02 7.45 -2.39 -0.02 2.00 16 50 H 0.00 -0.15 8.14 -2.38 -0.02 -0.17 16 Total: -1.00 -68.78 396.20 4.80 -63.98 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: 0.21 Total: 18.85 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: 6.26 Total: 1.25 kcal Atomic # 7 Polarization: -111.21 SS G_CDS: -4.50 Total: -115.70 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: 0.79 Total: -14.85 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -68.78 4.80 -63.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025585481.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.351 kcal (2) G-P(sol) polarization free energy of solvation -68.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds