Wall clock time and date at job start Tue Mar 31 2020 19:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52996 * 109.47140 * 2 1 4 4 C 1.50709 * 109.47116 * 119.99852 * 2 1 3 5 5 O 1.34253 * 126.52384 * 300.18888 * 4 2 1 6 6 C 1.34048 * 108.22751 * 180.26298 * 5 4 2 7 7 N 1.29938 * 109.24236 * 359.73386 * 6 5 4 8 8 C 1.36066 * 108.47392 * 359.97438 * 7 6 5 9 9 C 1.47428 * 126.44529 * 180.02562 * 8 7 6 10 10 O 1.21610 * 119.99806 * 180.02562 * 9 8 7 11 11 N 1.34771 * 119.99907 * 0.02562 * 9 8 7 12 12 C 1.46503 * 119.99798 * 179.72558 * 11 9 8 13 13 H 1.08993 * 109.47103 * 35.27776 * 12 11 9 14 14 C 1.52999 * 109.47053 * 275.27398 * 12 11 9 15 15 C 1.53004 * 109.47227 * 155.27787 * 12 11 9 16 16 H 1.09002 * 109.49374 * 304.93444 * 15 12 11 17 17 C 1.53036 * 109.49860 * 184.83470 * 15 12 11 18 18 C 1.53044 * 109.53869 * 178.67742 * 17 15 12 19 19 C 1.53191 * 109.30669 * 61.36917 * 18 17 15 20 20 N 1.46928 * 108.77886 * 305.36357 * 19 18 17 21 21 C 1.36938 * 120.63035 * 233.59129 * 20 19 18 22 22 H 1.07997 * 119.99798 * 152.30491 * 21 20 19 23 23 C 1.38813 * 119.99882 * 332.30490 * 21 20 19 24 24 N 1.31621 * 120.00138 * 342.60241 * 23 21 20 25 25 Si 1.86797 * 120.00065 * 162.60273 * 23 21 20 26 26 H 1.48498 * 109.47457 * 94.34460 * 25 23 21 27 27 H 1.48498 * 109.47320 * 214.35264 * 25 23 21 28 28 H 1.48505 * 109.47011 * 334.34648 * 25 23 21 29 29 C 1.46923 * 118.73673 * 53.60693 * 20 19 18 30 30 H 1.09008 * 109.47232 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47333 * 300.00085 * 1 2 3 32 32 H 1.08998 * 109.46998 * 60.00532 * 1 2 3 33 33 H 1.09002 * 109.47488 * 239.99149 * 2 1 3 34 34 H 1.09011 * 109.46925 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.47100 * 299.99236 * 3 2 1 36 36 H 1.08999 * 109.47431 * 60.00158 * 3 2 1 37 37 H 1.07999 * 125.37974 * 179.77009 * 6 5 4 38 38 H 0.97001 * 120.00066 * 0.02562 * 11 9 8 39 39 H 1.08999 * 109.47029 * 59.99777 * 14 12 11 40 40 H 1.09005 * 109.47233 * 180.02562 * 14 12 11 41 41 H 1.09002 * 109.47230 * 300.00197 * 14 12 11 42 42 H 1.08989 * 109.46207 * 298.70461 * 17 15 12 43 43 H 1.09010 * 109.45608 * 58.66470 * 17 15 12 44 44 H 1.09000 * 109.49991 * 301.41929 * 18 17 15 45 45 H 1.09000 * 109.52047 * 181.33195 * 18 17 15 46 46 H 1.08997 * 109.58568 * 185.57622 * 19 18 17 47 47 H 1.08997 * 109.70548 * 65.22364 * 19 18 17 48 48 H 0.96995 * 120.00082 * 180.02562 * 24 23 21 49 49 H 1.09004 * 109.58671 * 186.60507 * 29 20 19 50 50 H 1.09001 * 109.58477 * 66.18493 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2306 5 8 1.7871 -0.3699 2.5058 6 6 2.4156 -1.2461 3.3021 7 7 3.0370 -2.1211 2.5695 8 6 2.8173 -1.8216 1.2606 9 6 3.3374 -2.5583 0.0943 10 8 3.0665 -2.1850 -1.0309 11 7 4.1131 -3.6455 0.2752 12 6 4.6250 -4.3811 -0.8838 13 1 4.8471 -3.6812 -1.6892 14 6 3.5716 -5.3850 -1.3565 15 6 5.9011 -5.1281 -0.4908 16 1 6.6203 -4.4241 -0.0720 17 6 6.5024 -5.7982 -1.7283 18 6 7.7967 -6.5181 -1.3425 19 6 7.4833 -7.6043 -0.3087 20 7 6.7742 -6.9904 0.8223 21 6 7.2302 -7.1534 2.1032 22 1 7.0260 -6.3996 2.8491 23 6 7.9549 -8.2876 2.4428 24 7 7.9188 -9.3490 1.6652 25 14 8.9814 -8.3076 4.0033 26 1 8.1876 -8.8986 5.1104 27 1 10.2038 -9.1210 3.7814 28 1 9.3689 -6.9187 4.3587 29 6 5.5663 -6.1985 0.5527 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 1.8933 -0.5140 -0.8899 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9562 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 2.4064 -1.2281 4.3819 38 1 4.3289 -3.9435 1.1727 39 1 2.6624 -4.8530 -1.6364 40 1 3.9526 -5.9327 -2.2185 41 1 3.3495 -6.0850 -0.5510 42 1 5.7921 -6.5195 -2.1319 43 1 6.7189 -5.0411 -2.4821 44 1 8.4984 -5.8014 -0.9159 45 1 8.2371 -6.9754 -2.2285 46 1 8.4123 -8.0531 0.0428 47 1 6.8550 -8.3717 -0.7608 48 1 8.4250 -10.1416 1.9027 49 1 5.2305 -5.7197 1.4726 50 1 4.7806 -6.8494 0.1693 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025589152.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:30 Heat of formation + Delta-G solvation = -11.391059 kcal Electronic energy + Delta-G solvation = -29913.323378 eV Core-core repulsion = 25942.208785 eV Total energy + Delta-G solvation = -3971.114593 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.64391 -39.78954 -38.00846 -36.03026 -35.10724 -34.93074 -32.96138 -31.07037 -30.42420 -29.75659 -28.05195 -27.52057 -25.27836 -24.96576 -23.59885 -23.27097 -22.14029 -21.07064 -20.42565 -20.15043 -18.70468 -18.06104 -16.97074 -16.71747 -16.40165 -15.86106 -15.30863 -15.05296 -14.83275 -14.81183 -14.31530 -14.02486 -13.85650 -13.72719 -13.49173 -13.41607 -13.05771 -12.56090 -12.52229 -12.34767 -12.24373 -12.02794 -11.79371 -11.62894 -11.60912 -11.49020 -11.36258 -10.97342 -10.90007 -10.86558 -10.54295 -10.44086 -10.17524 -10.11721 -9.93163 -9.82733 -9.57640 -9.36687 -9.18587 -8.84554 -8.43660 -6.63770 -5.76966 -3.18563 0.94282 1.91626 2.35298 3.20165 3.29299 3.38221 3.45586 3.48269 3.88812 4.25234 4.50378 4.53898 4.73627 4.79754 4.97454 5.08619 5.25201 5.26525 5.27181 5.42310 5.45271 5.45324 5.46016 5.55646 5.60211 5.70985 5.71584 5.73780 5.86586 5.86944 5.90506 5.99362 6.08611 6.15605 6.25820 6.27930 6.38306 6.52660 6.62821 6.66682 6.73303 6.81904 6.89468 7.01817 7.24561 7.42664 7.67426 7.69925 7.81726 8.23219 8.46899 9.23427 9.87131 10.43711 11.31432 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015289 B = 0.002886 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.985553 B = 9699.722534 C =11026.396325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.030 4.030 3 C -0.146 4.146 4 C 0.049 3.951 5 O -0.199 6.199 6 C 0.172 3.828 7 N -0.459 5.459 8 C -0.074 4.074 9 C 0.602 3.398 10 O -0.543 6.543 11 N -0.699 5.699 12 C 0.149 3.851 13 H 0.084 0.916 14 C -0.165 4.165 15 C -0.113 4.113 16 H 0.072 0.928 17 C -0.100 4.100 18 C -0.142 4.142 19 C 0.169 3.831 20 N -0.591 5.591 21 C -0.251 4.251 22 H 0.065 0.935 23 C 0.002 3.998 24 N -0.902 5.902 25 Si 0.900 3.100 26 H -0.288 1.288 27 H -0.290 1.290 28 H -0.279 1.279 29 C 0.151 3.849 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.136 0.864 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.058 0.942 37 H 0.255 0.745 38 H 0.411 0.589 39 H 0.052 0.948 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.059 0.941 43 H 0.046 0.954 44 H 0.053 0.947 45 H 0.049 0.951 46 H 0.086 0.914 47 H 0.017 0.983 48 H 0.253 0.747 49 H 0.048 0.952 50 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.912 18.404 -3.192 22.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.048 4.048 3 C -0.203 4.203 4 C -0.008 4.008 5 O -0.085 6.085 6 C -0.056 4.056 7 N -0.187 5.187 8 C -0.194 4.194 9 C 0.388 3.612 10 O -0.422 6.422 11 N -0.350 5.350 12 C 0.045 3.955 13 H 0.102 0.898 14 C -0.223 4.223 15 C -0.134 4.134 16 H 0.091 0.909 17 C -0.138 4.138 18 C -0.181 4.181 19 C 0.044 3.956 20 N -0.313 5.313 21 C -0.381 4.381 22 H 0.082 0.918 23 C -0.196 4.196 24 N -0.547 5.547 25 Si 0.730 3.270 26 H -0.215 1.215 27 H -0.216 1.216 28 H -0.204 1.204 29 C 0.024 3.976 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.153 0.847 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.271 0.729 38 H 0.248 0.752 39 H 0.071 0.929 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.072 0.928 45 H 0.068 0.932 46 H 0.104 0.896 47 H 0.035 0.965 48 H 0.063 0.937 49 H 0.067 0.933 50 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -12.635 17.973 -3.708 22.281 hybrid contribution 0.344 0.193 1.415 1.469 sum -12.292 18.166 -2.293 22.053 Atomic orbital electron populations 1.21851 0.93208 1.02641 1.02624 1.20330 0.96695 0.96367 0.91397 1.21852 1.01697 0.94155 1.02629 1.23780 0.97365 0.95526 0.84123 1.84347 1.58809 1.49123 1.16192 1.28043 0.93077 0.85643 0.98879 1.70798 1.20949 1.25637 1.01331 1.21569 1.06318 0.99301 0.92180 1.16708 0.78365 0.80071 0.86088 1.90702 1.59818 1.68328 1.23318 1.46020 1.49913 1.27538 1.11481 1.21106 0.93822 0.93062 0.87537 0.89840 1.22266 0.98681 0.99294 1.02061 1.21954 0.94645 0.98349 0.98425 0.90940 1.21417 0.97979 0.98688 0.95694 1.22176 0.96219 1.00166 0.99569 1.20789 0.98059 0.90937 0.85859 1.44026 1.25216 1.58915 1.03140 1.19175 1.30514 1.01187 0.87211 0.91756 1.25013 1.02034 0.94683 0.97912 1.70041 1.43193 1.02464 1.38984 0.86317 0.80071 0.77486 0.83133 1.21491 1.21600 1.20444 1.21001 0.89929 0.91697 0.94957 0.92127 0.92295 0.91129 0.84679 0.92131 0.91115 0.92297 0.72949 0.75186 0.92862 0.91261 0.91522 0.92213 0.93533 0.92813 0.93227 0.89604 0.96457 0.93699 0.93329 0.95665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.17 37.15 0.34 -0.81 16 2 C -0.03 -0.29 3.24 -91.77 -0.30 -0.59 16 3 C -0.15 -1.16 9.17 37.16 0.34 -0.82 16 4 C 0.05 0.57 5.95 -35.08 -0.21 0.36 16 5 O -0.20 -2.01 10.73 6.53 0.07 -1.94 16 6 C 0.17 1.60 13.19 51.96 0.69 2.28 16 7 N -0.46 -5.96 11.06 -11.48 -0.13 -6.09 16 8 C -0.07 -1.02 6.99 -83.02 -0.58 -1.60 16 9 C 0.60 9.17 7.78 -12.52 -0.10 9.07 16 10 O -0.54 -8.86 14.13 5.27 0.07 -8.78 16 11 N -0.70 -10.55 5.01 -54.88 -0.27 -10.83 16 12 C 0.15 2.25 2.35 -67.93 -0.16 2.09 16 13 H 0.08 1.28 7.58 -51.93 -0.39 0.89 16 14 C -0.17 -2.37 8.76 37.16 0.33 -2.05 16 15 C -0.11 -1.93 2.27 -90.50 -0.21 -2.13 16 16 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 17 C -0.10 -1.66 4.89 -26.69 -0.13 -1.79 16 18 C -0.14 -2.70 6.08 -26.61 -0.16 -2.87 16 19 C 0.17 4.02 5.31 -3.71 -0.02 4.00 16 20 N -0.59 -14.64 2.99 -172.32 -0.52 -15.15 16 21 C -0.25 -6.87 9.58 -15.06 -0.14 -7.01 16 22 H 0.06 1.73 7.89 -52.49 -0.41 1.32 16 23 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 24 N -0.90 -26.18 11.19 55.49 0.62 -25.56 16 25 Si 0.90 21.71 29.59 -169.99 -5.03 16.68 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 28 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 29 C 0.15 3.07 5.26 -3.71 -0.02 3.05 16 30 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.14 1.56 5.52 -51.93 -0.29 1.27 16 34 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.25 1.04 8.06 -52.49 -0.42 0.61 16 38 H 0.41 6.33 7.00 -40.82 -0.29 6.04 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.07 0.94 6.59 -51.93 -0.34 0.59 16 41 H 0.07 1.01 6.23 -51.93 -0.32 0.68 16 42 H 0.06 0.97 6.62 -51.93 -0.34 0.63 16 43 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 44 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.09 2.29 6.04 -51.93 -0.31 1.98 16 47 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 49 H 0.05 0.98 6.74 -51.93 -0.35 0.63 16 50 H 0.03 0.53 6.06 -51.93 -0.31 0.21 16 LS Contribution 391.28 15.07 5.90 5.90 Total: -1.00 -31.83 391.28 -7.70 -39.54 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -8.00 Total: 5.06 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -0.42 Total: 1.17 kcal Atomic # 7 Polarization: -57.33 SS G_CDS: -0.30 Total: -57.62 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.14 Total: -10.72 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.83 -7.70 -39.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025589152.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.146 kcal (2) G-P(sol) polarization free energy of solvation -31.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds