Wall clock time and date at job start Tue Mar 31 2020 19:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52996 * 109.47140 * 2 1 4 4 C 1.50709 * 109.47116 * 119.99852 * 2 1 3 5 5 O 1.34253 * 126.52384 * 300.18888 * 4 2 1 6 6 C 1.34048 * 108.22751 * 180.26298 * 5 4 2 7 7 N 1.29938 * 109.24236 * 359.73386 * 6 5 4 8 8 C 1.36066 * 108.47392 * 359.97438 * 7 6 5 9 9 C 1.47428 * 126.44529 * 180.02562 * 8 7 6 10 10 O 1.21610 * 119.99806 * 180.02562 * 9 8 7 11 11 N 1.34771 * 119.99907 * 0.02562 * 9 8 7 12 12 C 1.46503 * 119.99798 * 179.72558 * 11 9 8 13 13 H 1.08993 * 109.47103 * 35.27776 * 12 11 9 14 14 C 1.52999 * 109.47053 * 275.27398 * 12 11 9 15 15 C 1.53004 * 109.47227 * 155.27787 * 12 11 9 16 16 H 1.09002 * 109.49374 * 304.93444 * 15 12 11 17 17 C 1.53036 * 109.49860 * 184.83470 * 15 12 11 18 18 C 1.53044 * 109.53869 * 178.67742 * 17 15 12 19 19 C 1.53191 * 109.30669 * 61.36917 * 18 17 15 20 20 N 1.46928 * 108.77886 * 305.36357 * 19 18 17 21 21 C 1.36938 * 120.63035 * 233.59129 * 20 19 18 22 22 H 1.07997 * 119.99798 * 152.30491 * 21 20 19 23 23 C 1.38813 * 119.99882 * 332.30490 * 21 20 19 24 24 N 1.31621 * 120.00138 * 342.60241 * 23 21 20 25 25 Si 1.86797 * 120.00065 * 162.60273 * 23 21 20 26 26 H 1.48498 * 109.47457 * 94.34460 * 25 23 21 27 27 H 1.48498 * 109.47320 * 214.35264 * 25 23 21 28 28 H 1.48505 * 109.47011 * 334.34648 * 25 23 21 29 29 C 1.46923 * 118.73673 * 53.60693 * 20 19 18 30 30 H 1.09008 * 109.47232 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47333 * 300.00085 * 1 2 3 32 32 H 1.08998 * 109.46998 * 60.00532 * 1 2 3 33 33 H 1.09002 * 109.47488 * 239.99149 * 2 1 3 34 34 H 1.09011 * 109.46925 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.47100 * 299.99236 * 3 2 1 36 36 H 1.08999 * 109.47431 * 60.00158 * 3 2 1 37 37 H 1.07999 * 125.37974 * 179.77009 * 6 5 4 38 38 H 0.97001 * 120.00066 * 0.02562 * 11 9 8 39 39 H 1.08999 * 109.47029 * 59.99777 * 14 12 11 40 40 H 1.09005 * 109.47233 * 180.02562 * 14 12 11 41 41 H 1.09002 * 109.47230 * 300.00197 * 14 12 11 42 42 H 1.08989 * 109.46207 * 298.70461 * 17 15 12 43 43 H 1.09010 * 109.45608 * 58.66470 * 17 15 12 44 44 H 1.09000 * 109.49991 * 301.41929 * 18 17 15 45 45 H 1.09000 * 109.52047 * 181.33195 * 18 17 15 46 46 H 1.08997 * 109.58568 * 185.57622 * 19 18 17 47 47 H 1.08997 * 109.70548 * 65.22364 * 19 18 17 48 48 H 0.96995 * 120.00082 * 180.02562 * 24 23 21 49 49 H 1.09004 * 109.58671 * 186.60507 * 29 20 19 50 50 H 1.09001 * 109.58477 * 66.18493 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2306 5 8 1.7871 -0.3699 2.5058 6 6 2.4156 -1.2461 3.3021 7 7 3.0370 -2.1211 2.5695 8 6 2.8173 -1.8216 1.2606 9 6 3.3374 -2.5583 0.0943 10 8 3.0665 -2.1850 -1.0309 11 7 4.1131 -3.6455 0.2752 12 6 4.6250 -4.3811 -0.8838 13 1 4.8471 -3.6812 -1.6892 14 6 3.5716 -5.3850 -1.3565 15 6 5.9011 -5.1281 -0.4908 16 1 6.6203 -4.4241 -0.0720 17 6 6.5024 -5.7982 -1.7283 18 6 7.7967 -6.5181 -1.3425 19 6 7.4833 -7.6043 -0.3087 20 7 6.7742 -6.9904 0.8223 21 6 7.2302 -7.1534 2.1032 22 1 7.0260 -6.3996 2.8491 23 6 7.9549 -8.2876 2.4428 24 7 7.9188 -9.3490 1.6652 25 14 8.9814 -8.3076 4.0033 26 1 8.1876 -8.8986 5.1104 27 1 10.2038 -9.1210 3.7814 28 1 9.3689 -6.9187 4.3587 29 6 5.5663 -6.1985 0.5527 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 1.8933 -0.5140 -0.8899 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9562 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 2.4064 -1.2281 4.3819 38 1 4.3289 -3.9435 1.1727 39 1 2.6624 -4.8530 -1.6364 40 1 3.9526 -5.9327 -2.2185 41 1 3.3495 -6.0850 -0.5510 42 1 5.7921 -6.5195 -2.1319 43 1 6.7189 -5.0411 -2.4821 44 1 8.4984 -5.8014 -0.9159 45 1 8.2371 -6.9754 -2.2285 46 1 8.4123 -8.0531 0.0428 47 1 6.8550 -8.3717 -0.7608 48 1 8.4250 -10.1416 1.9027 49 1 5.2305 -5.7197 1.4726 50 1 4.7806 -6.8494 0.1693 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025589152.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:29 Heat of formation + Delta-G solvation = -32.888168 kcal Electronic energy + Delta-G solvation = -29914.255563 eV Core-core repulsion = 25942.208785 eV Total energy + Delta-G solvation = -3972.046778 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.48558 -41.02555 -39.48509 -36.95828 -36.44348 -35.82476 -34.65325 -32.53728 -32.24849 -30.67274 -29.47081 -28.12739 -27.22826 -26.09477 -24.59151 -24.33958 -23.85483 -22.32885 -21.46463 -21.32474 -20.14979 -19.16927 -18.58534 -17.82215 -17.39871 -17.01159 -16.82774 -16.15747 -16.12074 -15.77874 -15.70832 -15.61059 -15.11070 -14.89681 -14.72254 -14.65437 -14.12973 -14.08234 -13.96690 -13.71238 -13.32277 -13.11196 -13.05073 -12.78447 -12.73035 -12.70108 -12.44348 -12.30193 -12.24974 -12.14913 -12.06005 -11.96075 -11.74984 -11.68054 -11.51140 -11.27776 -11.08651 -10.95856 -10.51682 -10.22948 -9.90705 -8.65117 -7.86592 -5.30946 0.03549 1.04523 1.45487 1.47267 1.54703 1.57223 2.11355 2.21537 2.51244 3.09987 3.27775 3.44648 3.56792 3.72951 3.90449 3.96810 3.98140 4.05370 4.06776 4.21945 4.34808 4.39655 4.46774 4.52643 4.62509 4.66663 4.68367 4.71991 4.84989 4.86196 4.86833 4.89371 4.95089 5.03780 5.06980 5.12846 5.17402 5.20269 5.25653 5.28927 5.31339 5.34923 5.45933 5.51210 5.58071 5.68156 5.80137 6.29371 6.39976 6.58526 7.06224 7.16081 7.87830 8.39038 9.19496 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015289 B = 0.002886 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.985553 B = 9699.722534 C =11026.396325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.032 4.032 3 C -0.141 4.141 4 C 0.056 3.944 5 O -0.194 6.194 6 C 0.193 3.807 7 N -0.499 5.499 8 C -0.107 4.107 9 C 0.600 3.400 10 O -0.559 6.559 11 N -0.702 5.702 12 C 0.158 3.842 13 H 0.089 0.911 14 C -0.158 4.158 15 C -0.097 4.097 16 H 0.062 0.938 17 C -0.096 4.096 18 C -0.131 4.131 19 C 0.174 3.826 20 N -0.609 5.609 21 C -0.261 4.261 22 H 0.064 0.936 23 C -0.050 4.050 24 N -0.934 5.934 25 Si 0.964 3.036 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.271 1.271 29 C 0.152 3.848 30 H 0.048 0.952 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.115 0.885 34 H 0.048 0.952 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.302 0.698 38 H 0.409 0.591 39 H 0.054 0.946 40 H 0.081 0.919 41 H 0.055 0.945 42 H 0.066 0.934 43 H 0.077 0.923 44 H 0.047 0.953 45 H 0.072 0.928 46 H 0.051 0.949 47 H -0.003 1.003 48 H 0.249 0.751 49 H 0.044 0.956 50 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.834 20.666 -3.052 25.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.051 4.051 3 C -0.198 4.198 4 C -0.002 4.002 5 O -0.080 6.080 6 C -0.035 4.035 7 N -0.227 5.227 8 C -0.225 4.225 9 C 0.387 3.613 10 O -0.439 6.439 11 N -0.352 5.352 12 C 0.054 3.946 13 H 0.107 0.893 14 C -0.216 4.216 15 C -0.118 4.118 16 H 0.080 0.920 17 C -0.134 4.134 18 C -0.170 4.170 19 C 0.048 3.952 20 N -0.332 5.332 21 C -0.392 4.392 22 H 0.081 0.919 23 C -0.245 4.245 24 N -0.580 5.580 25 Si 0.792 3.208 26 H -0.212 1.212 27 H -0.218 1.218 28 H -0.196 1.196 29 C 0.027 3.973 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.107 0.893 33 H 0.133 0.867 34 H 0.067 0.933 35 H 0.107 0.893 36 H 0.086 0.914 37 H 0.317 0.683 38 H 0.245 0.755 39 H 0.073 0.927 40 H 0.099 0.901 41 H 0.074 0.926 42 H 0.085 0.915 43 H 0.096 0.904 44 H 0.066 0.934 45 H 0.090 0.910 46 H 0.069 0.931 47 H 0.016 0.984 48 H 0.059 0.941 49 H 0.062 0.938 50 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -13.569 20.255 -3.583 24.642 hybrid contribution 0.562 -0.476 1.424 1.603 sum -13.008 19.779 -2.158 23.771 Atomic orbital electron populations 1.21831 0.91642 1.02331 1.03996 1.20386 0.97930 0.96986 0.89791 1.21833 1.00937 0.93037 1.04005 1.24080 0.96219 0.94738 0.85137 1.84383 1.58786 1.49175 1.15657 1.29128 0.90439 0.83713 1.00227 1.70762 1.23007 1.27563 1.01361 1.21463 1.08235 1.00580 0.92231 1.16942 0.77992 0.79870 0.86540 1.90684 1.60425 1.68740 1.24063 1.46022 1.50169 1.27766 1.11218 1.20977 0.92982 0.93015 0.87648 0.89348 1.22206 0.98541 0.98854 1.02040 1.21728 0.95439 0.97009 0.97623 0.91993 1.21410 0.96650 0.99353 0.95961 1.22014 0.97579 0.98634 0.98787 1.20632 0.95890 0.92038 0.86630 1.44285 1.26828 1.59403 1.02699 1.19481 1.30336 1.00981 0.88361 0.91868 1.25745 1.03353 0.94439 1.01002 1.70189 1.44144 1.02905 1.40755 0.85317 0.78232 0.77583 0.79663 1.21241 1.21839 1.19586 1.21081 0.88366 0.91929 0.95950 0.93260 0.91357 0.89323 0.86676 0.93283 0.89303 0.91359 0.68306 0.75509 0.92720 0.90068 0.92634 0.91540 0.90421 0.93405 0.90976 0.93104 0.98445 0.94149 0.93754 0.95847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.17 71.98 0.66 -1.32 16 2 C -0.03 -0.60 3.24 -11.54 -0.04 -0.63 16 3 C -0.14 -1.98 9.17 71.98 0.66 -1.32 16 4 C 0.06 1.24 5.95 25.19 0.15 1.39 16 5 O -0.19 -3.53 10.73 0.43 0.00 -3.52 16 6 C 0.19 3.16 13.19 130.52 1.72 4.88 16 7 N -0.50 -12.56 11.06 -305.15 -3.37 -15.93 16 8 C -0.11 -2.91 6.99 40.41 0.28 -2.62 16 9 C 0.60 18.28 7.78 86.66 0.67 18.96 16 10 O -0.56 -18.20 14.13 -4.06 -0.06 -18.25 16 11 N -0.70 -21.17 5.01 -445.80 -2.23 -23.40 16 12 C 0.16 4.63 2.35 44.99 0.11 4.74 16 13 H 0.09 2.57 7.58 -2.39 -0.02 2.55 16 14 C -0.16 -4.40 8.76 71.98 0.63 -3.77 16 15 C -0.10 -3.25 2.27 -10.72 -0.02 -3.27 16 16 H 0.06 2.22 8.14 -2.39 -0.02 2.21 16 17 C -0.10 -3.00 4.89 30.62 0.15 -2.85 16 18 C -0.13 -4.87 6.08 30.67 0.19 -4.68 16 19 C 0.17 8.43 5.31 86.36 0.46 8.88 16 20 N -0.61 -30.75 2.99 -699.10 -2.09 -32.85 16 21 C -0.26 -14.55 9.58 84.03 0.81 -13.75 16 22 H 0.06 3.45 7.89 -2.91 -0.02 3.43 16 23 C -0.05 -2.83 4.91 84.86 0.42 -2.41 16 24 N -0.93 -55.73 11.19 21.65 0.24 -55.49 16 25 Si 0.96 45.36 29.59 68.60 2.03 47.39 16 26 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 27 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 28 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 29 C 0.15 6.25 5.26 86.36 0.45 6.71 16 30 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.12 2.63 5.52 -2.39 -0.01 2.62 16 34 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 35 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.30 1.33 8.06 -2.91 -0.02 1.30 16 38 H 0.41 12.76 7.00 -92.71 -0.65 12.11 16 39 H 0.05 1.50 8.14 -2.39 -0.02 1.49 16 40 H 0.08 2.05 6.59 -2.38 -0.02 2.03 16 41 H 0.05 1.66 6.23 -2.39 -0.01 1.64 16 42 H 0.07 2.02 6.62 -2.39 -0.02 2.01 16 43 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 44 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 46 H 0.05 2.81 6.04 -2.39 -0.01 2.79 16 47 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 48 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 49 H 0.04 1.83 6.74 -2.38 -0.02 1.81 16 50 H 0.02 0.99 6.06 -2.39 -0.01 0.97 16 Total: -1.00 -70.77 391.28 2.11 -68.66 By element: Atomic # 1 Polarization: 24.17 SS G_CDS: 0.30 Total: 24.47 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: 7.29 Total: 8.93 kcal Atomic # 7 Polarization: -120.21 SS G_CDS: -7.46 Total: -127.67 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.05 Total: -21.78 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -70.77 2.11 -68.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025589152.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.775 kcal (2) G-P(sol) polarization free energy of solvation -70.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds