Wall clock time and date at job start Tue Mar 31 2020 19:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47236 * 2 1 4 4 C 1.50700 * 109.46669 * 119.99949 * 2 1 3 5 5 O 1.34268 * 126.52685 * 300.18194 * 4 2 1 6 6 C 1.34054 * 108.22453 * 180.26653 * 5 4 2 7 7 N 1.29929 * 109.24401 * 359.73791 * 6 5 4 8 8 C 1.36072 * 108.48268 * 359.97438 * 7 6 5 9 9 C 1.47415 * 126.45240 * 179.97438 * 8 7 6 10 10 O 1.21606 * 120.00059 * 180.02562 * 9 8 7 11 11 N 1.34774 * 119.99988 * 0.02738 * 9 8 7 12 12 C 1.46501 * 120.00291 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.46838 * 325.00183 * 12 11 9 14 14 C 1.53004 * 109.46892 * 84.99858 * 12 11 9 15 15 C 1.52995 * 109.47707 * 204.99775 * 12 11 9 16 16 H 1.09001 * 109.49125 * 60.06153 * 15 12 11 17 17 C 1.53032 * 109.52870 * 180.14473 * 15 12 11 18 18 C 1.53036 * 109.54203 * 181.33727 * 17 15 12 19 19 C 1.53630 * 109.24100 * 298.51188 * 18 17 15 20 20 N 1.46929 * 108.54105 * 54.85378 * 19 18 17 21 21 C 1.36936 * 120.62839 * 126.37570 * 20 19 18 22 22 H 1.08001 * 119.99493 * 207.52679 * 21 20 19 23 23 C 1.38811 * 120.00212 * 27.52222 * 21 20 19 24 24 N 1.31616 * 119.99796 * 25.85089 * 23 21 20 25 25 Si 1.86798 * 119.99834 * 205.57383 * 23 21 20 26 26 H 1.48497 * 109.47151 * 90.00469 * 25 23 21 27 27 H 1.48500 * 109.46743 * 210.00191 * 25 23 21 28 28 H 1.48499 * 109.47212 * 329.99989 * 25 23 21 29 29 C 1.46929 * 118.73997 * 306.09298 * 20 19 18 30 30 H 1.08998 * 109.46917 * 300.00413 * 1 2 3 31 31 H 1.09001 * 109.46676 * 59.99986 * 1 2 3 32 32 H 1.08998 * 109.47113 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46917 * 239.99587 * 2 1 3 34 34 H 1.09006 * 109.47244 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.47299 * 299.99632 * 3 2 1 36 36 H 1.08998 * 109.47504 * 59.99947 * 3 2 1 37 37 H 1.08000 * 125.37126 * 179.77017 * 6 5 4 38 38 H 0.97002 * 120.00401 * 359.97438 * 11 9 8 39 39 H 1.08999 * 109.47114 * 60.00494 * 14 12 11 40 40 H 1.08998 * 109.46827 * 180.02562 * 14 12 11 41 41 H 1.09002 * 109.46866 * 300.00017 * 14 12 11 42 42 H 1.09007 * 109.46104 * 301.35801 * 17 15 12 43 43 H 1.09003 * 109.46087 * 61.31347 * 17 15 12 44 44 H 1.09004 * 109.50061 * 58.58117 * 18 17 15 45 45 H 1.08995 * 109.50113 * 178.65377 * 18 17 15 46 46 H 1.09003 * 109.73907 * 295.12133 * 19 18 17 47 47 H 1.08993 * 109.66768 * 174.54799 * 19 18 17 48 48 H 0.96996 * 120.00373 * 4.05514 * 24 23 21 49 49 H 1.08992 * 109.58740 * 173.64770 * 29 20 19 50 50 H 1.08997 * 109.58765 * 294.08054 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.7872 -0.3698 2.5059 6 6 2.4157 -1.2462 3.3021 7 7 3.0370 -2.1211 2.5696 8 6 2.8174 -1.8217 1.2605 9 6 3.3383 -2.5577 0.0943 10 8 3.0673 -2.1844 -1.0309 11 7 4.1148 -3.6443 0.2751 12 6 4.6321 -4.3762 -0.8838 13 1 3.8921 -4.3592 -1.6840 14 6 5.9237 -3.7151 -1.3694 15 6 4.9193 -5.8251 -0.4854 16 1 3.9992 -6.2967 -0.1405 17 6 5.4631 -6.5898 -1.6943 18 6 5.7192 -8.0475 -1.3051 19 6 6.7735 -8.0957 -0.1887 20 7 6.3187 -7.2462 0.9205 21 6 6.2370 -7.7450 2.1932 22 1 5.5276 -7.3274 2.8922 23 6 7.0659 -8.7874 2.5846 24 7 8.2247 -8.9667 1.9869 25 14 6.5400 -9.9309 3.9650 26 1 5.7828 -11.0756 3.3980 27 1 7.7427 -10.4358 4.6747 28 1 5.6765 -9.1902 4.9195 29 6 5.9592 -5.8496 0.6393 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 3.1301 1.4424 0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.6768 1.9563 0.8899 37 1 2.4065 -1.2281 4.3819 38 1 4.3313 -3.9419 1.1726 39 1 6.6636 -3.7321 -0.5692 40 1 6.3083 -4.2594 -2.2319 41 1 5.7190 -2.6828 -1.6533 42 1 4.7352 -6.5529 -2.5049 43 1 6.3963 -6.1326 -2.0235 44 1 4.7915 -8.4983 -0.9523 45 1 6.0839 -8.5972 -2.1728 46 1 7.7265 -7.7247 -0.5660 47 1 6.8909 -9.1214 0.1609 48 1 8.5260 -8.3366 1.3139 49 1 5.5391 -5.3929 1.5353 50 1 6.8470 -5.2993 0.3280 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025589155.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:40 Heat of formation + Delta-G solvation = -13.966868 kcal Electronic energy + Delta-G solvation = -29984.131991 eV Core-core repulsion = 26012.905703 eV Total energy + Delta-G solvation = -3971.226288 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.65874 -39.85124 -38.13886 -36.06666 -35.27824 -34.95210 -33.14530 -31.09306 -30.37741 -29.77329 -28.12020 -27.53655 -25.18709 -24.90869 -23.61654 -23.37076 -22.22893 -21.06475 -20.43287 -20.21739 -18.74149 -18.14124 -17.30662 -16.98631 -16.46516 -15.93887 -15.35123 -15.08457 -14.87714 -14.54380 -14.38984 -14.02274 -13.89240 -13.67723 -13.58086 -13.50848 -13.32411 -12.81143 -12.57812 -12.55657 -12.17725 -12.05678 -11.99860 -11.63860 -11.62631 -11.51194 -11.37138 -11.02141 -10.89611 -10.80063 -10.55471 -10.35455 -10.19170 -10.06046 -10.01281 -9.87045 -9.75594 -9.24327 -9.20993 -8.89131 -8.33005 -6.84681 -6.07065 -3.20398 0.92184 1.89705 2.33573 3.16421 3.26269 3.51809 3.53316 3.70023 3.86940 4.23277 4.51540 4.59375 4.71919 4.76956 4.94679 5.00222 5.16903 5.24717 5.25667 5.34074 5.39013 5.43369 5.43805 5.49636 5.54090 5.62395 5.63092 5.69503 5.77354 5.85015 5.87592 5.91751 6.01570 6.06793 6.13987 6.15385 6.26784 6.39475 6.49928 6.53680 6.61355 6.70744 6.72772 6.86168 7.12255 7.22506 7.22596 7.63641 8.03016 8.19344 8.59588 9.13621 9.86851 10.31732 11.23104 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015147 B = 0.002920 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.055453 B = 9588.073488 C =10902.930603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.030 4.030 3 C -0.146 4.146 4 C 0.049 3.951 5 O -0.198 6.198 6 C 0.173 3.827 7 N -0.459 5.459 8 C -0.074 4.074 9 C 0.603 3.397 10 O -0.543 6.543 11 N -0.700 5.700 12 C 0.149 3.851 13 H 0.084 0.916 14 C -0.165 4.165 15 C -0.113 4.113 16 H 0.073 0.927 17 C -0.100 4.100 18 C -0.137 4.137 19 C 0.149 3.851 20 N -0.598 5.598 21 C -0.350 4.350 22 H 0.056 0.944 23 C -0.024 4.024 24 N -0.916 5.916 25 Si 1.067 2.933 26 H -0.293 1.293 27 H -0.290 1.290 28 H -0.292 1.292 29 C 0.153 3.847 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.135 0.865 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.058 0.942 37 H 0.255 0.745 38 H 0.412 0.588 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.054 0.946 42 H 0.049 0.951 43 H 0.060 0.940 44 H 0.057 0.943 45 H 0.051 0.949 46 H 0.016 0.984 47 H 0.078 0.922 48 H 0.269 0.731 49 H 0.050 0.950 50 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.107 18.375 -3.946 22.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.048 4.048 3 C -0.203 4.203 4 C -0.007 4.007 5 O -0.085 6.085 6 C -0.056 4.056 7 N -0.187 5.187 8 C -0.194 4.194 9 C 0.388 3.612 10 O -0.422 6.422 11 N -0.351 5.351 12 C 0.045 3.955 13 H 0.102 0.898 14 C -0.223 4.223 15 C -0.133 4.133 16 H 0.091 0.909 17 C -0.139 4.139 18 C -0.176 4.176 19 C 0.023 3.977 20 N -0.321 5.321 21 C -0.479 4.479 22 H 0.074 0.926 23 C -0.226 4.226 24 N -0.556 5.556 25 Si 0.897 3.103 26 H -0.221 1.221 27 H -0.216 1.216 28 H -0.219 1.219 29 C 0.027 3.973 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.153 0.847 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.271 0.729 38 H 0.249 0.751 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.070 0.930 46 H 0.034 0.966 47 H 0.096 0.904 48 H 0.080 0.920 49 H 0.069 0.931 50 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -12.489 16.752 -3.592 21.201 hybrid contribution -0.703 1.714 -0.249 1.869 sum -13.192 18.466 -3.840 23.016 Atomic orbital electron populations 1.21853 0.93184 1.02653 1.02645 1.20330 0.96718 0.96371 0.91374 1.21851 1.01676 0.94143 1.02650 1.23784 0.97311 0.95502 0.84142 1.84354 1.58808 1.49117 1.16176 1.28051 0.93023 0.85602 0.98889 1.70798 1.21018 1.25603 1.01321 1.21554 1.06391 0.99315 0.92171 1.16709 0.78127 0.80230 0.86115 1.90700 1.60340 1.67790 1.23322 1.46038 1.49733 1.27826 1.11474 1.21080 0.95696 0.91142 0.87588 0.89765 1.22265 0.97568 1.00558 1.01904 1.21936 1.00979 0.92149 0.98284 0.90869 1.21430 1.00116 0.96356 0.95949 1.22133 1.01204 0.95163 0.99120 1.21052 0.92726 0.96949 0.86936 1.44104 1.78424 1.05131 1.04452 1.19998 1.18183 1.20240 0.89496 0.92622 1.25821 0.92955 1.00806 1.03029 1.70754 1.16316 1.40849 1.27708 0.83476 0.75253 0.76105 0.75423 1.22084 1.21636 1.21874 1.20958 0.94265 0.87572 0.94507 0.92269 0.91115 0.92127 0.84704 0.92146 0.91106 0.92277 0.72910 0.75113 0.91707 0.91241 0.92735 0.93212 0.92132 0.92412 0.93016 0.96574 0.90375 0.91989 0.93129 0.95970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.18 37.16 0.34 -0.82 16 2 C -0.03 -0.29 3.24 -91.77 -0.30 -0.59 16 3 C -0.15 -1.15 9.17 37.15 0.34 -0.81 16 4 C 0.05 0.58 5.95 -35.08 -0.21 0.37 16 5 O -0.20 -2.03 10.73 6.47 0.07 -1.96 16 6 C 0.17 1.63 13.19 51.96 0.69 2.32 16 7 N -0.46 -6.07 11.06 -11.48 -0.13 -6.19 16 8 C -0.07 -1.04 6.99 -83.02 -0.58 -1.62 16 9 C 0.60 9.24 7.78 -12.53 -0.10 9.14 16 10 O -0.54 -8.87 14.13 5.27 0.07 -8.79 16 11 N -0.70 -10.69 5.00 -54.89 -0.27 -10.96 16 12 C 0.15 2.25 2.41 -67.93 -0.16 2.09 16 13 H 0.08 1.29 7.58 -51.93 -0.39 0.90 16 14 C -0.16 -2.34 8.79 37.16 0.33 -2.02 16 15 C -0.11 -1.93 2.33 -90.50 -0.21 -2.14 16 16 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 17 C -0.10 -1.64 4.77 -26.70 -0.13 -1.77 16 18 C -0.14 -2.56 6.10 -26.39 -0.16 -2.72 16 19 C 0.15 3.47 4.72 -3.48 -0.02 3.45 16 20 N -0.60 -14.78 2.85 -172.05 -0.49 -15.27 16 21 C -0.35 -9.73 9.48 -15.06 -0.14 -9.87 16 22 H 0.06 1.57 7.95 -52.49 -0.42 1.15 16 23 C -0.02 -0.68 4.66 -17.43 -0.08 -0.76 16 24 N -0.92 -27.41 12.46 55.49 0.69 -26.71 16 25 Si 1.07 25.39 29.99 -169.99 -5.10 20.29 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 28 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 29 C 0.15 3.14 5.29 -3.71 -0.02 3.12 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.14 1.56 5.52 -51.93 -0.29 1.27 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.26 1.08 8.06 -52.49 -0.42 0.65 16 38 H 0.41 6.49 6.70 -40.82 -0.27 6.21 16 39 H 0.06 0.97 6.32 -51.93 -0.33 0.64 16 40 H 0.07 0.92 6.46 -51.93 -0.34 0.58 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.96 6.50 -51.93 -0.34 0.62 16 44 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.02 0.38 7.87 -51.93 -0.41 -0.03 16 47 H 0.08 2.05 6.31 -51.93 -0.33 1.72 16 48 H 0.27 8.10 6.69 -40.82 -0.27 7.83 16 49 H 0.05 1.05 6.52 -51.93 -0.34 0.71 16 50 H 0.02 0.46 6.18 -51.93 -0.32 0.14 16 LS Contribution 389.79 15.07 5.87 5.87 Total: -1.00 -32.57 389.79 -7.60 -40.18 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -7.91 Total: 6.17 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: -0.41 Total: -2.62 kcal Atomic # 7 Polarization: -58.94 SS G_CDS: -0.20 Total: -59.14 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.14 Total: -10.75 kcal Atomic # 14 Polarization: 25.39 SS G_CDS: -5.10 Total: 20.29 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.57 -7.60 -40.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025589155.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.209 kcal (2) G-P(sol) polarization free energy of solvation -32.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds