Wall clock time and date at job start Tue Mar 31 2020 19:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47236 * 2 1 4 4 C 1.50700 * 109.46669 * 119.99949 * 2 1 3 5 5 O 1.34268 * 126.52685 * 300.18194 * 4 2 1 6 6 C 1.34054 * 108.22453 * 180.26653 * 5 4 2 7 7 N 1.29929 * 109.24401 * 359.73791 * 6 5 4 8 8 C 1.36072 * 108.48268 * 359.97438 * 7 6 5 9 9 C 1.47415 * 126.45240 * 179.97438 * 8 7 6 10 10 O 1.21606 * 120.00059 * 180.02562 * 9 8 7 11 11 N 1.34774 * 119.99988 * 0.02738 * 9 8 7 12 12 C 1.46501 * 120.00291 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.46838 * 325.00183 * 12 11 9 14 14 C 1.53004 * 109.46892 * 84.99858 * 12 11 9 15 15 C 1.52995 * 109.47707 * 204.99775 * 12 11 9 16 16 H 1.09001 * 109.49125 * 60.06153 * 15 12 11 17 17 C 1.53032 * 109.52870 * 180.14473 * 15 12 11 18 18 C 1.53036 * 109.54203 * 181.33727 * 17 15 12 19 19 C 1.53630 * 109.24100 * 298.51188 * 18 17 15 20 20 N 1.46929 * 108.54105 * 54.85378 * 19 18 17 21 21 C 1.36936 * 120.62839 * 126.37570 * 20 19 18 22 22 H 1.08001 * 119.99493 * 207.52679 * 21 20 19 23 23 C 1.38811 * 120.00212 * 27.52222 * 21 20 19 24 24 N 1.31616 * 119.99796 * 25.85089 * 23 21 20 25 25 Si 1.86798 * 119.99834 * 205.57383 * 23 21 20 26 26 H 1.48497 * 109.47151 * 90.00469 * 25 23 21 27 27 H 1.48500 * 109.46743 * 210.00191 * 25 23 21 28 28 H 1.48499 * 109.47212 * 329.99989 * 25 23 21 29 29 C 1.46929 * 118.73997 * 306.09298 * 20 19 18 30 30 H 1.08998 * 109.46917 * 300.00413 * 1 2 3 31 31 H 1.09001 * 109.46676 * 59.99986 * 1 2 3 32 32 H 1.08998 * 109.47113 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46917 * 239.99587 * 2 1 3 34 34 H 1.09006 * 109.47244 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.47299 * 299.99632 * 3 2 1 36 36 H 1.08998 * 109.47504 * 59.99947 * 3 2 1 37 37 H 1.08000 * 125.37126 * 179.77017 * 6 5 4 38 38 H 0.97002 * 120.00401 * 359.97438 * 11 9 8 39 39 H 1.08999 * 109.47114 * 60.00494 * 14 12 11 40 40 H 1.08998 * 109.46827 * 180.02562 * 14 12 11 41 41 H 1.09002 * 109.46866 * 300.00017 * 14 12 11 42 42 H 1.09007 * 109.46104 * 301.35801 * 17 15 12 43 43 H 1.09003 * 109.46087 * 61.31347 * 17 15 12 44 44 H 1.09004 * 109.50061 * 58.58117 * 18 17 15 45 45 H 1.08995 * 109.50113 * 178.65377 * 18 17 15 46 46 H 1.09003 * 109.73907 * 295.12133 * 19 18 17 47 47 H 1.08993 * 109.66768 * 174.54799 * 19 18 17 48 48 H 0.96996 * 120.00373 * 4.05514 * 24 23 21 49 49 H 1.08992 * 109.58740 * 173.64770 * 29 20 19 50 50 H 1.08997 * 109.58765 * 294.08054 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.7872 -0.3698 2.5059 6 6 2.4157 -1.2462 3.3021 7 7 3.0370 -2.1211 2.5696 8 6 2.8174 -1.8217 1.2605 9 6 3.3383 -2.5577 0.0943 10 8 3.0673 -2.1844 -1.0309 11 7 4.1148 -3.6443 0.2751 12 6 4.6321 -4.3762 -0.8838 13 1 3.8921 -4.3592 -1.6840 14 6 5.9237 -3.7151 -1.3694 15 6 4.9193 -5.8251 -0.4854 16 1 3.9992 -6.2967 -0.1405 17 6 5.4631 -6.5898 -1.6943 18 6 5.7192 -8.0475 -1.3051 19 6 6.7735 -8.0957 -0.1887 20 7 6.3187 -7.2462 0.9205 21 6 6.2370 -7.7450 2.1932 22 1 5.5276 -7.3274 2.8922 23 6 7.0659 -8.7874 2.5846 24 7 8.2247 -8.9667 1.9869 25 14 6.5400 -9.9309 3.9650 26 1 5.7828 -11.0756 3.3980 27 1 7.7427 -10.4358 4.6747 28 1 5.6765 -9.1902 4.9195 29 6 5.9592 -5.8496 0.6393 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 3.1301 1.4424 0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.6768 1.9563 0.8899 37 1 2.4065 -1.2281 4.3819 38 1 4.3313 -3.9419 1.1726 39 1 6.6636 -3.7321 -0.5692 40 1 6.3083 -4.2594 -2.2319 41 1 5.7190 -2.6828 -1.6533 42 1 4.7352 -6.5529 -2.5049 43 1 6.3963 -6.1326 -2.0235 44 1 4.7915 -8.4983 -0.9523 45 1 6.0839 -8.5972 -2.1728 46 1 7.7265 -7.7247 -0.5660 47 1 6.8909 -9.1214 0.1609 48 1 8.5260 -8.3366 1.3139 49 1 5.5391 -5.3929 1.5353 50 1 6.8470 -5.2993 0.3280 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025589155.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:39 Heat of formation + Delta-G solvation = -36.148186 kcal Electronic energy + Delta-G solvation = -29985.093846 eV Core-core repulsion = 26012.905703 eV Total energy + Delta-G solvation = -3972.188142 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.51457 -41.10308 -39.62687 -37.09873 -36.55381 -35.85704 -34.80872 -32.51767 -32.23759 -30.70448 -29.54050 -28.14686 -27.08047 -26.12846 -24.70286 -24.37594 -23.91379 -22.34068 -21.52410 -21.36195 -20.22371 -19.44499 -19.06028 -17.85227 -17.43851 -17.09601 -16.42410 -16.32049 -16.00870 -15.89776 -15.78317 -15.50615 -15.45026 -14.98703 -14.94434 -14.69188 -14.40519 -14.14625 -13.92920 -13.71483 -13.58965 -13.12968 -12.95041 -12.77687 -12.74357 -12.63782 -12.47794 -12.27202 -12.20054 -12.14021 -11.90636 -11.88782 -11.77799 -11.75176 -11.62469 -11.40487 -11.10973 -11.01399 -10.43803 -10.28185 -9.94637 -8.90306 -8.26453 -5.38646 0.00128 1.01004 1.51571 1.57411 1.64639 1.82224 2.06539 2.17401 2.64611 3.06245 3.20700 3.41650 3.44473 3.68457 3.82015 3.86101 3.92998 3.96122 4.04583 4.18852 4.22479 4.30621 4.34096 4.49740 4.51627 4.54976 4.61020 4.70235 4.72185 4.74667 4.84339 4.85641 4.87124 4.91128 5.01810 5.04484 5.08585 5.14047 5.15439 5.22205 5.23765 5.25990 5.30628 5.35014 5.45908 5.55771 5.84139 6.24703 6.39774 6.54118 7.00952 7.06867 7.78763 8.23208 9.00091 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015147 B = 0.002920 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.055453 B = 9588.073488 C =10902.930603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.032 4.032 3 C -0.141 4.141 4 C 0.057 3.943 5 O -0.193 6.193 6 C 0.194 3.806 7 N -0.500 5.500 8 C -0.108 4.108 9 C 0.600 3.400 10 O -0.558 6.558 11 N -0.704 5.704 12 C 0.158 3.842 13 H 0.090 0.910 14 C -0.158 4.158 15 C -0.097 4.097 16 H 0.060 0.940 17 C -0.096 4.096 18 C -0.127 4.127 19 C 0.152 3.848 20 N -0.617 5.617 21 C -0.355 4.355 22 H 0.047 0.953 23 C -0.074 4.074 24 N -0.942 5.942 25 Si 1.115 2.885 26 H -0.284 1.284 27 H -0.293 1.293 28 H -0.274 1.274 29 C 0.155 3.845 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.048 0.952 33 H 0.115 0.885 34 H 0.048 0.952 35 H 0.089 0.911 36 H 0.068 0.932 37 H 0.302 0.698 38 H 0.408 0.592 39 H 0.052 0.948 40 H 0.084 0.916 41 H 0.055 0.945 42 H 0.082 0.918 43 H 0.069 0.931 44 H 0.049 0.951 45 H 0.077 0.923 46 H 0.007 0.993 47 H 0.041 0.959 48 H 0.255 0.745 49 H 0.041 0.959 50 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.926 19.862 -4.134 25.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.051 4.051 3 C -0.198 4.198 4 C 0.000 4.000 5 O -0.079 6.079 6 C -0.034 4.034 7 N -0.229 5.229 8 C -0.227 4.227 9 C 0.387 3.613 10 O -0.438 6.438 11 N -0.354 5.354 12 C 0.053 3.947 13 H 0.108 0.892 14 C -0.216 4.216 15 C -0.118 4.118 16 H 0.078 0.922 17 C -0.134 4.134 18 C -0.166 4.166 19 C 0.027 3.973 20 N -0.341 5.341 21 C -0.485 4.485 22 H 0.065 0.935 23 C -0.271 4.271 24 N -0.584 5.584 25 Si 0.940 3.060 26 H -0.211 1.211 27 H -0.220 1.220 28 H -0.199 1.199 29 C 0.030 3.970 30 H 0.087 0.913 31 H 0.107 0.893 32 H 0.067 0.933 33 H 0.133 0.867 34 H 0.067 0.933 35 H 0.107 0.893 36 H 0.087 0.913 37 H 0.317 0.683 38 H 0.244 0.756 39 H 0.071 0.929 40 H 0.103 0.897 41 H 0.074 0.926 42 H 0.100 0.900 43 H 0.088 0.912 44 H 0.068 0.932 45 H 0.095 0.905 46 H 0.025 0.975 47 H 0.060 0.940 48 H 0.065 0.935 49 H 0.059 0.941 50 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -14.325 18.262 -3.810 23.520 hybrid contribution -0.155 1.339 -0.143 1.356 sum -14.479 19.601 -3.953 24.688 Atomic orbital electron populations 1.21835 0.91616 1.02320 1.04047 1.20392 0.97949 0.97022 0.89727 1.21832 1.00937 0.92977 1.04045 1.24098 0.96108 0.94668 0.85167 1.84390 1.58767 1.49143 1.15643 1.29129 0.90394 0.83681 1.00230 1.70762 1.23113 1.27586 1.01419 1.21461 1.08355 1.00638 0.92206 1.16942 0.77732 0.80057 0.86577 1.90682 1.60902 1.68198 1.24015 1.46058 1.50024 1.28096 1.11203 1.20979 0.96271 0.89788 0.87641 0.89215 1.22206 0.96649 1.00780 1.01965 1.21716 0.98973 0.93724 0.97369 0.92201 1.21433 1.01457 0.94300 0.96223 1.22003 0.99079 0.97371 0.98118 1.20956 0.93923 0.94557 0.87875 1.44344 1.78694 1.07049 1.04003 1.20210 1.17281 1.20252 0.90743 0.93487 1.27131 0.92563 1.02419 1.04978 1.70873 1.17683 1.41080 1.28749 0.82834 0.75044 0.74754 0.73334 1.21071 1.21979 1.19943 1.21027 0.95097 0.85327 0.95560 0.91329 0.89255 0.93308 0.86680 0.93272 0.89253 0.91339 0.68282 0.75590 0.92869 0.89746 0.92615 0.89994 0.91225 0.93245 0.90473 0.97549 0.94004 0.93521 0.94073 0.95956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.18 71.98 0.66 -1.34 16 2 C -0.03 -0.60 3.24 -11.54 -0.04 -0.64 16 3 C -0.14 -1.98 9.17 71.98 0.66 -1.32 16 4 C 0.06 1.29 5.95 25.19 0.15 1.44 16 5 O -0.19 -3.58 10.73 0.24 0.00 -3.57 16 6 C 0.19 3.27 13.19 130.52 1.72 4.99 16 7 N -0.50 -12.95 11.06 -305.15 -3.37 -16.33 16 8 C -0.11 -3.00 6.99 40.41 0.28 -2.72 16 9 C 0.60 18.52 7.78 86.66 0.67 19.20 16 10 O -0.56 -18.22 14.13 -4.05 -0.06 -18.28 16 11 N -0.70 -21.63 5.00 -445.81 -2.23 -23.85 16 12 C 0.16 4.62 2.41 44.99 0.11 4.73 16 13 H 0.09 2.60 7.58 -2.39 -0.02 2.58 16 14 C -0.16 -4.31 8.79 71.98 0.63 -3.68 16 15 C -0.10 -3.25 2.33 -10.72 -0.02 -3.28 16 16 H 0.06 2.18 8.14 -2.39 -0.02 2.17 16 17 C -0.10 -2.94 4.77 30.62 0.15 -2.79 16 18 C -0.13 -4.60 6.10 30.82 0.19 -4.41 16 19 C 0.15 7.22 4.72 86.51 0.41 7.63 16 20 N -0.62 -31.17 2.85 -698.24 -1.99 -33.16 16 21 C -0.36 -20.19 9.48 84.03 0.80 -19.39 16 22 H 0.05 2.70 7.95 -2.91 -0.02 2.68 16 23 C -0.07 -4.29 4.66 84.86 0.40 -3.89 16 24 N -0.94 -57.97 12.46 21.65 0.27 -57.71 16 25 Si 1.12 51.80 29.99 68.60 2.06 53.86 16 26 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 27 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 28 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 29 C 0.16 6.44 5.29 86.36 0.46 6.90 16 30 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.12 2.64 5.52 -2.39 -0.01 2.62 16 34 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 35 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.30 1.48 8.06 -2.91 -0.02 1.46 16 38 H 0.41 13.18 6.70 -92.71 -0.62 12.56 16 39 H 0.05 1.57 6.32 -2.39 -0.02 1.55 16 40 H 0.08 2.04 6.46 -2.39 -0.02 2.03 16 41 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 43 H 0.07 2.04 6.50 -2.39 -0.02 2.02 16 44 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 45 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 46 H 0.01 0.32 7.87 -2.39 -0.02 0.30 16 47 H 0.04 2.26 6.31 -2.39 -0.02 2.25 16 48 H 0.25 15.96 6.69 -92.71 -0.62 15.34 16 49 H 0.04 1.75 6.52 -2.39 -0.02 1.74 16 50 H 0.02 0.94 6.18 -2.39 -0.01 0.93 16 Total: -1.00 -73.02 389.79 2.38 -70.64 By element: Atomic # 1 Polarization: 26.49 SS G_CDS: 0.48 Total: 26.97 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: 7.22 Total: 1.43 kcal Atomic # 7 Polarization: -123.72 SS G_CDS: -7.32 Total: -131.04 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -0.05 Total: -21.86 kcal Atomic # 14 Polarization: 51.80 SS G_CDS: 2.06 Total: 53.86 kcal Total: -73.02 2.38 -70.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025589155.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.490 kcal (2) G-P(sol) polarization free energy of solvation -73.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds