Wall clock time and date at job start Tue Mar 31 2020 19:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47462 * 2 1 4 4 C 1.50699 * 109.47253 * 120.00474 * 2 1 3 5 5 O 1.21282 * 119.99912 * 95.00512 * 4 2 1 6 6 N 1.34770 * 119.99826 * 275.00914 * 4 2 1 7 7 C 1.46878 * 120.46878 * 4.91330 * 6 4 2 8 8 C 1.52861 * 109.02037 * 235.49002 * 7 6 4 9 9 C 1.52674 * 109.17587 * 307.81661 * 8 7 6 10 10 C 1.53484 * 113.62536 * 188.98735 * 9 8 7 11 11 N 1.47662 * 85.98793 * 137.71135 * 10 9 8 12 12 C 1.36936 * 134.45671 * 155.66665 * 11 10 9 13 13 H 1.08000 * 120.00224 * 175.05713 * 12 11 10 14 14 C 1.38816 * 120.00060 * 355.05590 * 12 11 10 15 15 N 1.31615 * 119.99447 * 5.04584 * 14 12 11 16 16 Si 1.86795 * 119.99911 * 185.04541 * 14 12 11 17 17 H 1.48507 * 109.47033 * 94.99985 * 16 14 12 18 18 H 1.48495 * 109.47263 * 214.99749 * 16 14 12 19 19 H 1.48499 * 109.47136 * 335.00143 * 16 14 12 20 20 C 1.47670 * 91.08578 * 335.68186 * 11 10 9 21 21 C 1.52672 * 113.18398 * 57.45773 * 9 8 7 22 22 C 1.46894 * 120.46721 * 185.18963 * 6 4 2 23 23 C 1.53008 * 109.47070 * 240.00466 * 2 1 3 24 24 H 1.08998 * 110.21179 * 300.47489 * 23 2 1 25 25 C 1.54473 * 110.24718 * 62.49698 * 23 2 1 26 26 C 1.54628 * 101.76632 * 144.41363 * 25 23 2 27 27 C 1.51288 * 104.19587 * 335.20418 * 26 25 23 28 28 O 1.21273 * 124.94382 * 196.26952 * 27 26 25 29 29 N 1.34427 * 110.11377 * 16.25052 * 27 26 25 30 30 H 1.08993 * 109.47350 * 294.97949 * 1 2 3 31 31 H 1.09004 * 109.46989 * 54.98147 * 1 2 3 32 32 H 1.09001 * 109.46714 * 174.97586 * 1 2 3 33 33 H 1.08996 * 109.58958 * 355.31132 * 7 6 4 34 34 H 1.08996 * 109.59240 * 115.75048 * 7 6 4 35 35 H 1.08995 * 109.61364 * 187.83894 * 8 7 6 36 36 H 1.09004 * 109.38576 * 67.65424 * 8 7 6 37 37 H 1.09002 * 113.79146 * 251.98029 * 10 9 8 38 38 H 1.09000 * 113.78310 * 23.44060 * 10 9 8 39 39 H 0.97003 * 119.99233 * 180.02562 * 15 14 12 40 40 H 1.08997 * 113.79108 * 270.04758 * 20 11 10 41 41 H 1.08997 * 113.89200 * 138.59833 * 20 11 10 42 42 H 1.08998 * 109.53235 * 182.51964 * 21 9 8 43 43 H 1.08998 * 109.53388 * 62.29992 * 21 9 8 44 44 H 1.08997 * 109.58698 * 244.25807 * 22 6 4 45 45 H 1.09001 * 109.58585 * 4.69084 * 22 6 4 46 46 H 1.08998 * 110.97158 * 262.53597 * 25 23 2 47 47 H 1.09006 * 110.97093 * 26.29817 * 25 23 2 48 48 H 1.08997 * 110.49169 * 216.52487 * 26 25 23 49 49 H 1.09006 * 110.59742 * 93.93309 * 26 25 23 50 50 H 0.96991 * 124.34503 * 180.43003 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.3209 -1.8872 1.1758 6 7 2.1609 -0.0383 2.3914 7 6 1.7141 1.3568 2.4976 8 6 2.8803 2.2180 2.9823 9 6 3.4662 1.6011 4.2501 10 6 4.5002 2.4952 4.9480 11 7 3.8439 2.0932 6.2082 12 6 4.2420 2.0215 7.5164 13 1 3.5286 1.7617 8.2845 14 6 5.5626 2.2827 7.8554 15 7 6.4087 2.6955 6.9356 16 14 6.1385 2.0482 9.6168 17 1 6.7386 0.6980 9.7658 18 1 7.1539 3.0803 9.9471 19 1 4.9811 2.1799 10.5377 20 6 2.5863 1.7993 5.4922 21 6 3.9342 0.1608 4.0568 22 6 2.7554 -0.6886 3.5667 23 6 2.0400 -0.7212 -1.2494 24 1 1.6765 -1.7486 -1.2659 25 6 1.5872 0.0286 -2.5217 26 6 2.8019 -0.1747 -3.4567 27 6 3.9624 -0.4022 -2.5131 28 8 5.1330 -0.3258 -2.8206 29 7 3.5071 -0.7009 -1.2840 30 1 -0.3634 0.4339 0.9315 31 1 -0.3633 0.5897 -0.8417 32 1 -0.3633 -1.0237 -0.0900 33 1 1.3826 1.7098 1.5211 34 1 0.8927 1.4242 3.2110 35 1 2.5261 3.2260 3.1977 36 1 3.6470 2.2575 2.2084 37 1 5.5257 2.1382 4.8530 38 1 4.3937 3.5547 4.7152 39 1 7.3315 2.8777 7.1725 40 1 1.9110 2.6519 5.4212 41 1 2.0891 0.8895 5.8286 42 1 4.2986 -0.2343 5.0051 43 1 4.7349 0.1338 3.3178 44 1 2.0089 -0.7684 4.3568 45 1 3.1098 -1.6827 3.2941 46 1 0.6902 -0.4249 -2.9434 47 1 1.4271 1.0868 -2.3148 48 1 2.9712 0.7161 -4.0616 49 1 2.6530 -1.0456 -4.0950 50 1 4.0752 -0.8798 -0.5185 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035802752.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:27 Heat of formation + Delta-G solvation = -20.621419 kcal Electronic energy + Delta-G solvation = -30395.204368 eV Core-core repulsion = 26423.689516 eV Total energy + Delta-G solvation = -3971.514851 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.13118 -40.08568 -38.82609 -36.91149 -35.82358 -33.64000 -32.45345 -31.59020 -30.98510 -30.39302 -27.13796 -26.94363 -25.23214 -24.78234 -23.54538 -23.00890 -21.69935 -20.94038 -20.69393 -19.39862 -18.06983 -17.47918 -16.89319 -16.71420 -16.51192 -15.88994 -15.43527 -14.95980 -14.85681 -14.71640 -14.19721 -14.03038 -13.90713 -13.80250 -13.70152 -13.37956 -13.27590 -13.12342 -12.58739 -12.45115 -12.39546 -12.37365 -12.16838 -11.78225 -11.72918 -11.61236 -11.35288 -11.13319 -11.05320 -10.89743 -10.85554 -10.37124 -10.21174 -10.04764 -9.84097 -9.72463 -9.53378 -9.40709 -9.30846 -8.76104 -8.51660 -6.87524 -5.77548 -3.09392 2.42336 2.49383 2.92527 3.15338 3.38076 3.43054 3.45238 3.92237 4.06217 4.20526 4.38932 4.44371 4.66958 4.73471 4.75823 4.77732 4.94773 4.99109 5.14168 5.21698 5.27016 5.28013 5.29653 5.31722 5.41720 5.44484 5.47396 5.48435 5.63992 5.65755 5.77583 5.80912 5.86583 5.90164 6.12390 6.22220 6.26176 6.38160 6.56739 6.59622 6.60650 6.76874 6.82835 6.86916 7.21462 7.37325 7.38889 7.57713 7.98539 8.06870 8.07995 9.04247 9.70734 10.60644 11.39205 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020048 B = 0.002688 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.332844 B =10412.905199 C =10972.682848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.124 4.124 3 H 0.102 0.898 4 C 0.515 3.485 5 O -0.546 6.546 6 N -0.601 5.601 7 C 0.106 3.894 8 C -0.120 4.120 9 C -0.108 4.108 10 C 0.170 3.830 11 N -0.608 5.608 12 C -0.223 4.223 13 H 0.078 0.922 14 C -0.006 4.006 15 N -0.919 5.919 16 Si 0.909 3.091 17 H -0.288 1.288 18 H -0.291 1.291 19 H -0.281 1.281 20 C 0.127 3.873 21 C -0.096 4.096 22 C 0.113 3.887 23 C 0.149 3.851 24 H 0.093 0.907 25 C -0.128 4.128 26 C -0.156 4.156 27 C 0.517 3.483 28 O -0.537 6.537 29 N -0.722 5.722 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.023 0.977 39 H 0.253 0.747 40 H 0.030 0.970 41 H 0.040 0.960 42 H 0.088 0.912 43 H 0.059 0.941 44 H 0.068 0.932 45 H 0.087 0.913 46 H 0.093 0.907 47 H 0.086 0.914 48 H 0.102 0.898 49 H 0.104 0.896 50 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.774 -3.732 -19.329 25.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.146 4.146 3 H 0.120 0.880 4 C 0.303 3.697 5 O -0.424 6.424 6 N -0.333 5.333 7 C -0.016 4.016 8 C -0.159 4.159 9 C -0.109 4.109 10 C 0.045 3.955 11 N -0.334 5.334 12 C -0.351 4.351 13 H 0.095 0.905 14 C -0.203 4.203 15 N -0.566 5.566 16 Si 0.740 3.260 17 H -0.216 1.216 18 H -0.218 1.218 19 H -0.207 1.207 20 C 0.001 3.999 21 C -0.134 4.134 22 C -0.009 4.009 23 C 0.043 3.957 24 H 0.111 0.889 25 C -0.166 4.166 26 C -0.196 4.196 27 C 0.303 3.697 28 O -0.414 6.414 29 N -0.377 5.377 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.041 0.959 39 H 0.063 0.937 40 H 0.048 0.952 41 H 0.058 0.942 42 H 0.106 0.894 43 H 0.078 0.922 44 H 0.086 0.914 45 H 0.106 0.894 46 H 0.112 0.888 47 H 0.105 0.895 48 H 0.120 0.880 49 H 0.122 0.878 50 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -14.837 -4.270 -19.315 24.727 hybrid contribution 0.562 0.168 1.601 1.704 sum -14.275 -4.102 -17.714 23.117 Atomic orbital electron populations 1.21732 0.91419 1.03453 1.03302 1.21756 0.98600 1.01259 0.92951 0.87992 1.20479 0.77907 0.87092 0.84271 1.90703 1.51112 1.15660 1.84940 1.48139 1.60445 1.13394 1.11300 1.21775 0.97617 0.80578 1.01671 1.21765 0.97182 0.98710 0.98264 1.22368 0.99720 0.96186 0.92647 1.22287 0.96609 0.93807 0.82813 1.45958 1.07830 1.76339 1.03304 1.19007 0.93325 1.40636 0.82130 0.90462 1.24771 0.96073 1.01694 0.97760 1.69821 1.04150 1.50712 1.31943 0.86146 0.78345 0.77502 0.84029 1.21571 1.21762 1.20696 1.22573 0.90595 0.97000 0.89726 1.21486 0.96147 0.93733 1.02047 1.21724 0.95887 0.97088 0.86214 1.21549 0.80181 1.00326 0.93625 0.88892 1.22725 0.98219 1.01833 0.93779 1.22358 0.93812 1.05091 0.98389 1.20886 0.89717 0.75335 0.83793 1.90769 1.18962 1.52266 1.79424 1.46362 1.07916 1.71088 1.12344 0.91385 0.90857 0.91446 0.90128 0.90980 0.90591 0.91832 0.90800 0.95888 0.93692 0.95238 0.94190 0.89392 0.92199 0.91395 0.89420 0.88798 0.89533 0.87959 0.87755 0.74788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.74 8.64 37.16 0.32 -0.42 16 2 C -0.12 -0.93 1.52 -91.77 -0.14 -1.07 16 3 H 0.10 0.70 6.50 -51.93 -0.34 0.36 16 4 C 0.51 5.95 6.18 -10.99 -0.07 5.89 16 5 O -0.55 -8.10 15.26 5.56 0.08 -8.02 16 6 N -0.60 -7.12 2.95 -172.95 -0.51 -7.63 16 7 C 0.11 1.06 5.67 -3.91 -0.02 1.04 16 8 C -0.12 -1.54 5.24 -26.97 -0.14 -1.68 16 9 C -0.11 -1.83 0.77 -154.43 -0.12 -1.95 16 10 C 0.17 3.83 6.71 -3.16 -0.02 3.81 16 11 N -0.61 -14.99 3.53 -179.79 -0.63 -15.62 16 12 C -0.22 -6.15 10.70 -15.06 -0.16 -6.31 16 13 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 14 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 15 N -0.92 -27.02 11.36 55.49 0.63 -26.39 16 16 Si 0.91 22.07 29.56 -169.99 -5.02 17.04 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 18 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 C 0.13 2.41 7.72 -3.15 -0.02 2.39 16 21 C -0.10 -1.58 5.21 -26.73 -0.14 -1.72 16 22 C 0.11 1.57 6.29 -3.65 -0.02 1.55 16 23 C 0.15 1.13 2.58 -67.01 -0.17 0.96 16 24 H 0.09 0.76 7.91 -51.93 -0.41 0.35 16 25 C -0.13 -0.59 5.71 -25.10 -0.14 -0.73 16 26 C -0.16 -1.03 6.86 -26.74 -0.18 -1.21 16 27 C 0.52 5.96 8.43 -10.85 -0.09 5.87 16 28 O -0.54 -8.75 18.03 5.56 0.10 -8.65 16 29 N -0.72 -7.62 5.68 -52.76 -0.30 -7.92 16 30 H 0.07 0.37 7.38 -51.93 -0.38 -0.01 16 31 H 0.07 0.22 7.49 -51.93 -0.39 -0.17 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.58 5.06 -51.93 -0.26 0.32 16 34 H 0.07 0.70 8.07 -51.93 -0.42 0.28 16 35 H 0.08 0.93 8.12 -51.93 -0.42 0.51 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 1.89 7.01 -51.93 -0.36 1.53 16 38 H 0.02 0.54 8.09 -51.93 -0.42 0.12 16 39 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 40 H 0.03 0.54 8.07 -51.93 -0.42 0.12 16 41 H 0.04 0.73 7.41 -51.93 -0.38 0.35 16 42 H 0.09 1.70 8.01 -51.93 -0.42 1.29 16 43 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.07 0.93 7.49 -51.93 -0.39 0.54 16 45 H 0.09 1.29 7.00 -51.93 -0.36 0.93 16 46 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 47 H 0.09 0.31 7.89 -51.93 -0.41 -0.09 16 48 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.41 5.05 8.27 -40.82 -0.34 4.71 16 LS Contribution 386.21 15.07 5.82 5.82 Total: -1.00 -34.82 386.21 -9.27 -44.09 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -8.21 Total: 1.15 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: -1.22 Total: 6.13 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: -0.81 Total: -57.56 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: 0.19 Total: -16.67 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.82 -9.27 -44.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035802752.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.468 kcal (2) G-P(sol) polarization free energy of solvation -34.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds