Wall clock time and date at job start Tue Mar 31 2020 19:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47462 * 2 1 4 4 C 1.50699 * 109.47253 * 120.00474 * 2 1 3 5 5 O 1.21282 * 119.99912 * 95.00512 * 4 2 1 6 6 N 1.34770 * 119.99826 * 275.00914 * 4 2 1 7 7 C 1.46878 * 120.46878 * 4.91330 * 6 4 2 8 8 C 1.52861 * 109.02037 * 235.49002 * 7 6 4 9 9 C 1.52674 * 109.17587 * 307.81661 * 8 7 6 10 10 C 1.53484 * 113.62536 * 188.98735 * 9 8 7 11 11 N 1.47662 * 85.98793 * 137.71135 * 10 9 8 12 12 C 1.36936 * 134.45671 * 155.66665 * 11 10 9 13 13 H 1.08000 * 120.00224 * 175.05713 * 12 11 10 14 14 C 1.38816 * 120.00060 * 355.05590 * 12 11 10 15 15 N 1.31615 * 119.99447 * 5.04584 * 14 12 11 16 16 Si 1.86795 * 119.99911 * 185.04541 * 14 12 11 17 17 H 1.48507 * 109.47033 * 94.99985 * 16 14 12 18 18 H 1.48495 * 109.47263 * 214.99749 * 16 14 12 19 19 H 1.48499 * 109.47136 * 335.00143 * 16 14 12 20 20 C 1.47670 * 91.08578 * 335.68186 * 11 10 9 21 21 C 1.52672 * 113.18398 * 57.45773 * 9 8 7 22 22 C 1.46894 * 120.46721 * 185.18963 * 6 4 2 23 23 C 1.53008 * 109.47070 * 240.00466 * 2 1 3 24 24 H 1.08998 * 110.21179 * 300.47489 * 23 2 1 25 25 C 1.54473 * 110.24718 * 62.49698 * 23 2 1 26 26 C 1.54628 * 101.76632 * 144.41363 * 25 23 2 27 27 C 1.51288 * 104.19587 * 335.20418 * 26 25 23 28 28 O 1.21273 * 124.94382 * 196.26952 * 27 26 25 29 29 N 1.34427 * 110.11377 * 16.25052 * 27 26 25 30 30 H 1.08993 * 109.47350 * 294.97949 * 1 2 3 31 31 H 1.09004 * 109.46989 * 54.98147 * 1 2 3 32 32 H 1.09001 * 109.46714 * 174.97586 * 1 2 3 33 33 H 1.08996 * 109.58958 * 355.31132 * 7 6 4 34 34 H 1.08996 * 109.59240 * 115.75048 * 7 6 4 35 35 H 1.08995 * 109.61364 * 187.83894 * 8 7 6 36 36 H 1.09004 * 109.38576 * 67.65424 * 8 7 6 37 37 H 1.09002 * 113.79146 * 251.98029 * 10 9 8 38 38 H 1.09000 * 113.78310 * 23.44060 * 10 9 8 39 39 H 0.97003 * 119.99233 * 180.02562 * 15 14 12 40 40 H 1.08997 * 113.79108 * 270.04758 * 20 11 10 41 41 H 1.08997 * 113.89200 * 138.59833 * 20 11 10 42 42 H 1.08998 * 109.53235 * 182.51964 * 21 9 8 43 43 H 1.08998 * 109.53388 * 62.29992 * 21 9 8 44 44 H 1.08997 * 109.58698 * 244.25807 * 22 6 4 45 45 H 1.09001 * 109.58585 * 4.69084 * 22 6 4 46 46 H 1.08998 * 110.97158 * 262.53597 * 25 23 2 47 47 H 1.09006 * 110.97093 * 26.29817 * 25 23 2 48 48 H 1.08997 * 110.49169 * 216.52487 * 26 25 23 49 49 H 1.09006 * 110.59742 * 93.93309 * 26 25 23 50 50 H 0.96991 * 124.34503 * 180.43003 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.3209 -1.8872 1.1758 6 7 2.1609 -0.0383 2.3914 7 6 1.7141 1.3568 2.4976 8 6 2.8803 2.2180 2.9823 9 6 3.4662 1.6011 4.2501 10 6 4.5002 2.4952 4.9480 11 7 3.8439 2.0932 6.2082 12 6 4.2420 2.0215 7.5164 13 1 3.5286 1.7617 8.2845 14 6 5.5626 2.2827 7.8554 15 7 6.4087 2.6955 6.9356 16 14 6.1385 2.0482 9.6168 17 1 6.7386 0.6980 9.7658 18 1 7.1539 3.0803 9.9471 19 1 4.9811 2.1799 10.5377 20 6 2.5863 1.7993 5.4922 21 6 3.9342 0.1608 4.0568 22 6 2.7554 -0.6886 3.5667 23 6 2.0400 -0.7212 -1.2494 24 1 1.6765 -1.7486 -1.2659 25 6 1.5872 0.0286 -2.5217 26 6 2.8019 -0.1747 -3.4567 27 6 3.9624 -0.4022 -2.5131 28 8 5.1330 -0.3258 -2.8206 29 7 3.5071 -0.7009 -1.2840 30 1 -0.3634 0.4339 0.9315 31 1 -0.3633 0.5897 -0.8417 32 1 -0.3633 -1.0237 -0.0900 33 1 1.3826 1.7098 1.5211 34 1 0.8927 1.4242 3.2110 35 1 2.5261 3.2260 3.1977 36 1 3.6470 2.2575 2.2084 37 1 5.5257 2.1382 4.8530 38 1 4.3937 3.5547 4.7152 39 1 7.3315 2.8777 7.1725 40 1 1.9110 2.6519 5.4212 41 1 2.0891 0.8895 5.8286 42 1 4.2986 -0.2343 5.0051 43 1 4.7349 0.1338 3.3178 44 1 2.0089 -0.7684 4.3568 45 1 3.1098 -1.6827 3.2941 46 1 0.6902 -0.4249 -2.9434 47 1 1.4271 1.0868 -2.3148 48 1 2.9712 0.7161 -4.0616 49 1 2.6530 -1.0456 -4.0950 50 1 4.0752 -0.8798 -0.5185 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035802752.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:26 Heat of formation + Delta-G solvation = -45.585604 kcal Electronic energy + Delta-G solvation = -30396.286896 eV Core-core repulsion = 26423.689516 eV Total energy + Delta-G solvation = -3972.597380 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.98776 -41.15214 -40.07682 -37.81825 -37.03406 -34.59680 -34.13519 -32.23678 -32.06549 -31.83335 -28.70520 -27.66025 -26.78270 -25.83031 -24.78305 -24.03209 -22.92728 -21.98816 -21.42461 -20.37897 -19.04523 -18.71762 -18.43627 -17.83428 -17.35871 -16.88157 -16.75994 -16.31106 -16.12364 -15.84303 -15.59954 -15.18349 -15.02153 -14.84837 -14.58919 -14.40698 -14.06234 -13.93121 -13.67479 -13.57603 -13.54240 -13.24764 -13.02493 -12.90610 -12.84482 -12.80487 -12.66242 -12.32520 -12.21334 -12.18358 -12.00581 -11.82794 -11.68627 -11.54578 -11.19691 -11.05821 -10.93306 -10.78169 -10.57161 -10.11977 -9.59172 -8.88053 -7.90619 -5.22254 1.42323 1.44124 1.52533 1.57657 1.61974 2.02169 2.40250 2.46233 3.29293 3.31367 3.40722 3.51258 3.60571 3.63413 3.81037 3.93819 3.98279 4.16806 4.19089 4.28537 4.30855 4.35064 4.36857 4.43100 4.63957 4.69740 4.74962 4.77715 4.80361 4.88859 4.91002 4.93175 4.97899 5.03878 5.06251 5.13764 5.14343 5.20172 5.28466 5.29705 5.34054 5.42888 5.53279 5.59343 5.76256 5.78642 5.96631 6.06597 6.47820 6.92839 7.16874 7.20140 7.62531 8.59753 9.25977 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020048 B = 0.002688 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.332844 B =10412.905199 C =10972.682848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.114 4.114 3 H 0.118 0.882 4 C 0.510 3.490 5 O -0.585 6.585 6 N -0.603 5.603 7 C 0.110 3.890 8 C -0.115 4.115 9 C -0.081 4.081 10 C 0.163 3.837 11 N -0.640 5.640 12 C -0.229 4.229 13 H 0.081 0.919 14 C -0.068 4.068 15 N -0.953 5.953 16 Si 0.973 3.027 17 H -0.290 1.290 18 H -0.296 1.296 19 H -0.266 1.266 20 C 0.132 3.868 21 C -0.089 4.089 22 C 0.125 3.875 23 C 0.143 3.857 24 H 0.086 0.914 25 C -0.112 4.112 26 C -0.148 4.148 27 C 0.502 3.498 28 O -0.600 6.600 29 N -0.727 5.727 30 H 0.071 0.929 31 H 0.107 0.893 32 H 0.061 0.939 33 H 0.122 0.878 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.063 0.937 37 H 0.031 0.969 38 H 0.016 0.984 39 H 0.246 0.754 40 H 0.053 0.947 41 H 0.049 0.951 42 H 0.050 0.950 43 H 0.049 0.951 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.127 0.873 47 H 0.107 0.893 48 H 0.115 0.885 49 H 0.119 0.881 50 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.951 -2.954 -21.150 29.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.136 4.136 3 H 0.136 0.864 4 C 0.300 3.700 5 O -0.465 6.465 6 N -0.335 5.335 7 C -0.012 4.012 8 C -0.153 4.153 9 C -0.082 4.082 10 C 0.037 3.963 11 N -0.366 5.366 12 C -0.358 4.358 13 H 0.099 0.901 14 C -0.261 4.261 15 N -0.602 5.602 16 Si 0.802 3.198 17 H -0.217 1.217 18 H -0.223 1.223 19 H -0.191 1.191 20 C 0.007 3.993 21 C -0.127 4.127 22 C 0.002 3.998 23 C 0.038 3.962 24 H 0.104 0.896 25 C -0.150 4.150 26 C -0.187 4.187 27 C 0.291 3.709 28 O -0.481 6.481 29 N -0.378 5.378 30 H 0.090 0.910 31 H 0.126 0.874 32 H 0.080 0.920 33 H 0.139 0.861 34 H 0.105 0.895 35 H 0.109 0.891 36 H 0.082 0.918 37 H 0.050 0.950 38 H 0.034 0.966 39 H 0.055 0.945 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.093 0.907 45 H 0.094 0.906 46 H 0.145 0.855 47 H 0.126 0.874 48 H 0.134 0.866 49 H 0.137 0.863 50 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -19.118 -3.487 -21.143 28.717 hybrid contribution 1.862 -0.131 2.194 2.880 sum -17.256 -3.617 -18.949 25.883 Atomic orbital electron populations 1.21798 0.88818 1.03935 1.05049 1.21827 1.00448 1.01101 0.90231 0.86430 1.21319 0.76857 0.86813 0.85037 1.90691 1.52630 1.17688 1.85500 1.48205 1.60284 1.14234 1.10755 1.21954 0.96324 0.78592 1.04315 1.21734 0.98288 0.99712 0.95604 1.22074 0.96748 0.95066 0.94340 1.22239 0.95967 0.94302 0.83747 1.46346 1.10719 1.76563 1.02958 1.19402 0.93546 1.39013 0.83836 0.90113 1.25578 0.96442 1.02527 1.01560 1.70023 1.03937 1.52549 1.33712 0.85133 0.77904 0.76823 0.79949 1.21712 1.22308 1.19100 1.22760 0.89335 0.97938 0.89227 1.21339 0.97198 0.94211 0.99995 1.21395 0.94860 0.96032 0.87496 1.21812 0.78169 1.00763 0.95477 0.89647 1.22828 0.98168 1.02946 0.91011 1.22412 0.92162 1.06319 0.97844 1.21870 0.90151 0.74133 0.84766 1.90724 1.21832 1.55047 1.80525 1.46643 1.09448 1.70042 1.11715 0.90986 0.87444 0.92030 0.86055 0.89470 0.89123 0.91814 0.95039 0.96606 0.94543 0.92968 0.93264 0.93107 0.93200 0.90716 0.90631 0.85461 0.87444 0.86643 0.86284 0.76525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.71 8.64 71.98 0.62 -0.09 16 2 C -0.11 -1.28 1.52 -11.54 -0.02 -1.30 16 3 H 0.12 0.99 6.50 -2.39 -0.02 0.98 16 4 C 0.51 10.76 6.18 87.66 0.54 11.30 16 5 O -0.58 -17.09 15.26 -3.03 -0.05 -17.14 16 6 N -0.60 -12.96 2.95 -819.50 -2.42 -15.38 16 7 C 0.11 1.74 5.67 86.26 0.49 2.23 16 8 C -0.11 -2.63 5.24 30.44 0.16 -2.47 16 9 C -0.08 -2.73 0.77 -52.03 -0.04 -2.77 16 10 C 0.16 7.61 6.71 86.31 0.58 8.19 16 11 N -0.64 -32.12 3.53 -722.72 -2.55 -34.67 16 12 C -0.23 -12.88 10.70 84.03 0.90 -11.98 16 13 H 0.08 4.35 7.83 -2.91 -0.02 4.32 16 14 C -0.07 -3.94 5.50 84.86 0.47 -3.48 16 15 N -0.95 -58.59 11.36 21.65 0.25 -58.34 16 16 Si 0.97 46.55 29.56 68.60 2.03 48.57 16 17 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 18 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 19 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 20 C 0.13 4.84 7.72 86.32 0.67 5.51 16 21 C -0.09 -3.04 5.21 30.60 0.16 -2.88 16 22 C 0.13 3.45 6.29 86.42 0.54 3.99 16 23 C 0.14 1.74 2.58 45.44 0.12 1.85 16 24 H 0.09 1.20 7.91 -2.39 -0.02 1.19 16 25 C -0.11 -0.46 5.71 31.65 0.18 -0.28 16 26 C -0.15 -1.49 6.86 30.59 0.21 -1.28 16 27 C 0.50 11.35 8.43 87.90 0.74 12.09 16 28 O -0.60 -20.30 18.03 -3.01 -0.05 -20.36 16 29 N -0.73 -14.85 5.68 -439.42 -2.50 -17.34 16 30 H 0.07 0.37 7.38 -2.39 -0.02 0.35 16 31 H 0.11 -0.12 7.49 -2.38 -0.02 -0.13 16 32 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.12 1.03 5.06 -2.39 -0.01 1.01 16 34 H 0.09 1.22 8.07 -2.39 -0.02 1.21 16 35 H 0.09 1.89 8.12 -2.39 -0.02 1.87 16 36 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 37 H 0.03 1.72 7.01 -2.39 -0.02 1.70 16 38 H 0.02 0.76 8.09 -2.39 -0.02 0.75 16 39 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 40 H 0.05 1.74 8.07 -2.39 -0.02 1.72 16 41 H 0.05 1.72 7.41 -2.39 -0.02 1.71 16 42 H 0.05 2.10 8.01 -2.39 -0.02 2.08 16 43 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.07 1.96 7.49 -2.39 -0.02 1.95 16 45 H 0.08 2.29 7.00 -2.39 -0.02 2.27 16 46 H 0.13 -0.20 8.14 -2.39 -0.02 -0.22 16 47 H 0.11 0.08 7.89 -2.38 -0.02 0.06 16 48 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 49 H 0.12 0.88 8.14 -2.38 -0.02 0.86 16 50 H 0.40 10.05 8.27 -92.71 -0.77 9.29 16 Total: -1.00 -83.61 386.21 1.21 -82.41 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: 0.18 Total: 13.61 kcal Atomic # 6 Polarization: 12.32 SS G_CDS: 6.32 Total: 18.64 kcal Atomic # 7 Polarization: -118.52 SS G_CDS: -7.22 Total: -125.73 kcal Atomic # 8 Polarization: -37.39 SS G_CDS: -0.10 Total: -37.49 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.57 kcal Total: -83.61 1.21 -82.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035802752.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.820 kcal (2) G-P(sol) polarization free energy of solvation -83.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds