Wall clock time and date at job start Tue Mar 31 2020 19:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47045 * 2 1 4 4 C 1.50697 * 109.47303 * 240.00005 * 2 1 3 5 5 O 1.21281 * 120.00051 * 263.28192 * 4 2 1 6 6 N 1.34772 * 120.00293 * 83.27491 * 4 2 1 7 7 C 1.46888 * 120.46363 * 4.72052 * 6 4 2 8 8 C 1.52860 * 109.01411 * 235.48417 * 7 6 4 9 9 C 1.52673 * 109.17898 * 307.81518 * 8 7 6 10 10 C 1.53480 * 113.62225 * 188.99837 * 9 8 7 11 11 N 1.47664 * 85.98539 * 137.71183 * 10 9 8 12 12 C 1.36935 * 134.45658 * 155.72100 * 11 10 9 13 13 H 1.08009 * 119.99901 * 178.07650 * 12 11 10 14 14 C 1.38809 * 120.00074 * 358.07387 * 12 11 10 15 15 N 1.31617 * 120.00077 * 7.77803 * 14 12 11 16 16 Si 1.86807 * 120.00101 * 187.77226 * 14 12 11 17 17 H 1.48497 * 109.47046 * 94.95825 * 16 14 12 18 18 H 1.48496 * 109.47372 * 214.96423 * 16 14 12 19 19 H 1.48499 * 109.46871 * 334.96141 * 16 14 12 20 20 C 1.47667 * 91.08542 * 335.67634 * 11 10 9 21 21 C 1.52677 * 113.18006 * 57.46533 * 9 8 7 22 22 C 1.46883 * 120.46841 * 184.99292 * 6 4 2 23 23 C 1.52996 * 109.47055 * 119.99602 * 2 1 3 24 24 H 1.09003 * 110.21545 * 59.52505 * 23 2 1 25 25 C 1.54824 * 110.29790 * 297.55604 * 23 2 1 26 26 C 1.54626 * 101.61022 * 215.53298 * 25 23 2 27 27 C 1.51293 * 104.30946 * 24.82048 * 26 25 23 28 28 O 1.21281 * 124.93743 * 163.72152 * 27 26 25 29 29 N 1.34417 * 110.11469 * 343.68555 * 27 26 25 30 30 H 1.08996 * 109.47044 * 177.66723 * 1 2 3 31 31 H 1.08996 * 109.46985 * 297.66760 * 1 2 3 32 32 H 1.09002 * 109.46970 * 57.66343 * 1 2 3 33 33 H 1.09001 * 109.59056 * 355.30760 * 7 6 4 34 34 H 1.08996 * 109.58731 * 115.74565 * 7 6 4 35 35 H 1.09004 * 109.60969 * 187.83714 * 8 7 6 36 36 H 1.08999 * 109.44934 * 67.70168 * 8 7 6 37 37 H 1.09006 * 113.78881 * 251.97520 * 10 9 8 38 38 H 1.08998 * 113.79313 * 23.43560 * 10 9 8 39 39 H 0.97008 * 120.00204 * 180.02562 * 15 14 12 40 40 H 1.08997 * 113.79317 * 270.05144 * 20 11 10 41 41 H 1.09005 * 113.78560 * 138.58427 * 20 11 10 42 42 H 1.09002 * 109.52363 * 182.51848 * 21 9 8 43 43 H 1.09001 * 109.59086 * 62.33233 * 21 9 8 44 44 H 1.08999 * 109.58818 * 244.25510 * 22 6 4 45 45 H 1.08998 * 109.58744 * 4.55087 * 22 6 4 46 46 H 1.09001 * 111.08008 * 97.44653 * 25 23 2 47 47 H 1.09002 * 111.00908 * 333.58166 * 25 23 2 48 48 H 1.08997 * 110.48604 * 266.08036 * 26 25 23 49 49 H 1.08994 * 110.49156 * 143.56591 * 26 25 23 50 50 H 0.96996 * 124.34737 * 179.61175 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.3504 -1.8791 -1.1685 6 7 2.1282 -0.0470 -2.3997 7 6 1.8447 1.3928 -2.4644 8 6 0.7642 1.6408 -3.5169 9 6 1.1793 0.9775 -4.8279 10 6 0.2779 1.3437 -6.0148 11 7 1.5270 1.4617 -6.7934 12 6 1.8408 1.3681 -8.1230 13 1 2.8573 1.5293 -8.4507 14 6 0.8525 1.0659 -9.0498 15 7 -0.4086 1.0203 -8.6758 16 14 1.3124 0.7242 -10.8278 17 1 1.4545 -0.7401 -11.0297 18 1 0.2491 1.2465 -11.7233 19 1 2.5991 1.3947 -11.1439 20 6 2.3020 1.7222 -5.5637 21 6 1.4298 -0.5222 -4.6897 22 6 2.5117 -0.7548 -3.6283 23 6 2.0400 -0.7211 1.2493 24 1 1.6764 -1.7486 1.2658 25 6 1.5857 0.0287 2.5253 26 6 2.8019 -0.1781 3.4574 27 6 3.9624 -0.4041 2.5134 28 8 5.1330 -0.3291 2.8213 29 7 3.5071 -0.7009 1.2840 30 1 -0.3633 -1.0268 -0.0418 31 1 -0.3633 0.4772 0.9101 32 1 -0.3633 0.5497 -0.8683 33 1 1.4929 1.7401 -1.4930 34 1 2.7509 1.9315 -2.7413 35 1 0.6447 2.7130 -3.6728 36 1 -0.1793 1.2149 -3.1757 37 1 -0.3694 0.5303 -6.3427 38 1 -0.2529 2.2874 -5.8892 39 1 -1.0992 0.8087 -9.3234 40 1 2.3729 2.7784 -5.3041 41 1 3.2634 1.2095 -5.5331 42 1 1.7643 -0.9253 -5.6455 43 1 0.5087 -1.0201 -4.3864 44 1 3.4658 -0.3705 -3.9887 45 1 2.6015 -1.8215 -3.4226 46 1 0.6888 -0.4243 2.9479 47 1 1.4266 1.0875 2.3207 48 1 2.6516 -1.0508 4.0928 49 1 2.9722 0.7104 4.0654 50 1 4.0752 -0.8791 0.5183 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035802755.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:36 Heat of formation + Delta-G solvation = -45.304453 kcal Electronic energy + Delta-G solvation = -30240.661321 eV Core-core repulsion = 26268.076133 eV Total energy + Delta-G solvation = -3972.585188 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.98321 -41.14242 -40.06724 -37.80036 -37.03289 -34.57928 -34.13652 -32.23510 -32.05362 -31.83276 -28.69950 -27.65065 -26.77016 -25.81049 -24.83665 -23.97736 -22.95302 -22.02225 -21.41188 -20.36664 -18.89807 -18.70699 -18.42822 -17.96461 -17.32673 -16.87583 -16.79682 -16.18857 -16.07992 -15.97187 -15.61202 -15.18090 -15.01266 -14.87937 -14.53913 -14.32436 -14.01628 -13.96754 -13.72422 -13.59616 -13.52571 -13.27601 -13.01713 -12.92545 -12.82836 -12.79798 -12.63511 -12.32647 -12.19778 -12.16813 -11.99079 -11.83489 -11.66609 -11.54073 -11.18216 -11.05022 -10.92337 -10.76175 -10.57251 -10.10870 -9.59181 -8.88783 -7.91499 -5.21001 1.42930 1.44585 1.52788 1.58775 1.61169 2.01883 2.40744 2.46683 3.28826 3.31290 3.41701 3.52173 3.61406 3.63869 3.81093 3.94131 3.99805 4.15219 4.20235 4.27684 4.31319 4.35563 4.37128 4.44496 4.65729 4.69880 4.75746 4.77046 4.80337 4.89228 4.92055 4.94019 4.97780 5.04060 5.07057 5.14762 5.15526 5.22272 5.27963 5.28482 5.33006 5.45437 5.53241 5.60631 5.77465 5.80300 5.96399 6.07085 6.47621 6.94011 7.16612 7.21643 7.62626 8.59940 9.26010 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.028950 B = 0.002410 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.950068 B =11614.887351 C =11890.022229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.112 4.112 3 H 0.123 0.877 4 C 0.510 3.490 5 O -0.584 6.584 6 N -0.602 5.602 7 C 0.108 3.892 8 C -0.112 4.112 9 C -0.080 4.080 10 C 0.170 3.830 11 N -0.640 5.640 12 C -0.230 4.230 13 H 0.079 0.921 14 C -0.066 4.066 15 N -0.952 5.952 16 Si 0.972 3.028 17 H -0.289 1.289 18 H -0.295 1.295 19 H -0.269 1.269 20 C 0.128 3.872 21 C -0.088 4.088 22 C 0.124 3.876 23 C 0.143 3.857 24 H 0.082 0.918 25 C -0.113 4.113 26 C -0.148 4.148 27 C 0.505 3.495 28 O -0.598 6.598 29 N -0.724 5.724 30 H 0.054 0.946 31 H 0.108 0.892 32 H 0.070 0.930 33 H 0.122 0.878 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.030 0.970 38 H 0.018 0.982 39 H 0.247 0.753 40 H 0.049 0.951 41 H 0.045 0.955 42 H 0.050 0.950 43 H 0.058 0.942 44 H 0.068 0.932 45 H 0.077 0.923 46 H 0.124 0.876 47 H 0.108 0.892 48 H 0.117 0.883 49 H 0.116 0.884 50 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.481 1.580 25.969 26.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.134 4.134 3 H 0.141 0.859 4 C 0.300 3.700 5 O -0.465 6.465 6 N -0.334 5.334 7 C -0.014 4.014 8 C -0.150 4.150 9 C -0.081 4.081 10 C 0.045 3.955 11 N -0.367 5.367 12 C -0.359 4.359 13 H 0.096 0.904 14 C -0.259 4.259 15 N -0.601 5.601 16 Si 0.800 3.200 17 H -0.217 1.217 18 H -0.222 1.222 19 H -0.194 1.194 20 C 0.003 3.997 21 C -0.126 4.126 22 C 0.001 3.999 23 C 0.038 3.962 24 H 0.100 0.900 25 C -0.151 4.151 26 C -0.188 4.188 27 C 0.293 3.707 28 O -0.480 6.480 29 N -0.376 5.376 30 H 0.073 0.927 31 H 0.127 0.873 32 H 0.089 0.911 33 H 0.140 0.860 34 H 0.095 0.905 35 H 0.107 0.893 36 H 0.094 0.906 37 H 0.048 0.952 38 H 0.036 0.964 39 H 0.056 0.944 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.076 0.924 44 H 0.086 0.914 45 H 0.095 0.905 46 H 0.142 0.858 47 H 0.127 0.873 48 H 0.135 0.865 49 H 0.135 0.865 50 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -0.832 1.002 25.912 25.944 hybrid contribution 0.521 -0.495 -2.561 2.660 sum -0.311 0.507 23.350 23.358 Atomic orbital electron populations 1.21791 0.89393 1.03343 1.05252 1.21806 0.99937 1.01396 0.90281 0.85944 1.21310 0.76672 0.86723 0.85308 1.90692 1.51534 1.18523 1.85749 1.48195 1.67171 1.10471 1.07568 1.21942 0.99112 0.79009 1.01308 1.21721 0.99046 1.01474 0.92791 1.22072 0.96779 0.95011 0.94240 1.22166 0.89669 0.96585 0.87116 1.46417 1.06151 1.82737 1.01361 1.19385 0.94224 1.39508 0.82785 0.90359 1.25528 0.95271 1.03276 1.01860 1.70009 0.99445 1.56221 1.34464 0.85158 0.77174 0.77631 0.79995 1.21671 1.22161 1.19364 1.22778 0.95004 0.97187 0.84694 1.21334 0.98611 0.94764 0.97901 1.21396 0.97065 0.97716 0.83758 1.21820 0.78374 1.00640 0.95355 0.89961 1.22888 0.98160 1.02963 0.91053 1.22407 0.92220 1.06308 0.97889 1.21785 0.90075 0.74122 0.84692 1.90721 1.21654 1.55089 1.80493 1.46580 1.09240 1.70026 1.11727 0.92709 0.87343 0.91125 0.86019 0.90464 0.89296 0.90598 0.95199 0.96402 0.94404 0.93326 0.93637 0.93138 0.92368 0.91360 0.90498 0.85790 0.87331 0.86463 0.86548 0.76279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 8.90 71.98 0.64 -0.38 16 2 C -0.11 -1.25 1.54 -11.54 -0.02 -1.27 16 3 H 0.12 0.86 6.32 -2.39 -0.02 0.85 16 4 C 0.51 10.68 6.22 87.66 0.55 11.23 16 5 O -0.58 -16.97 15.15 -3.03 -0.05 -17.02 16 6 N -0.60 -12.86 2.95 -819.49 -2.42 -15.28 16 7 C 0.11 1.73 5.96 86.26 0.51 2.24 16 8 C -0.11 -2.39 5.24 30.44 0.16 -2.23 16 9 C -0.08 -2.59 0.77 -52.03 -0.04 -2.63 16 10 C 0.17 7.68 6.61 86.31 0.57 8.25 16 11 N -0.64 -31.89 3.53 -722.79 -2.55 -34.45 16 12 C -0.23 -12.89 10.69 84.03 0.90 -12.00 16 13 H 0.08 4.24 7.84 -2.91 -0.02 4.22 16 14 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16 15 N -0.95 -57.49 11.48 21.65 0.25 -57.24 16 16 Si 0.97 46.13 29.56 68.60 2.03 48.16 16 17 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 18 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 19 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 20 C 0.13 4.73 7.72 86.32 0.67 5.39 16 21 C -0.09 -2.86 5.22 30.60 0.16 -2.70 16 22 C 0.12 3.37 6.29 86.42 0.54 3.92 16 23 C 0.14 1.65 2.57 45.56 0.12 1.77 16 24 H 0.08 1.17 7.92 -2.39 -0.02 1.15 16 25 C -0.11 -0.41 5.60 31.77 0.18 -0.23 16 26 C -0.15 -1.31 6.85 30.59 0.21 -1.10 16 27 C 0.50 10.26 8.43 87.90 0.74 11.00 16 28 O -0.60 -18.51 18.03 -3.03 -0.05 -18.57 16 29 N -0.72 -13.18 5.66 -438.86 -2.49 -15.67 16 30 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.11 0.08 7.25 -2.39 -0.02 0.06 16 32 H 0.07 0.57 7.69 -2.39 -0.02 0.55 16 33 H 0.12 1.03 5.10 -2.39 -0.01 1.02 16 34 H 0.08 1.22 8.07 -2.39 -0.02 1.20 16 35 H 0.09 1.76 8.12 -2.38 -0.02 1.74 16 36 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.03 1.56 7.23 -2.38 -0.02 1.54 16 38 H 0.02 0.84 8.09 -2.39 -0.02 0.82 16 39 H 0.25 14.53 8.31 -92.70 -0.77 13.76 16 40 H 0.05 1.66 8.07 -2.39 -0.02 1.64 16 41 H 0.05 1.63 7.41 -2.38 -0.02 1.62 16 42 H 0.05 2.01 8.01 -2.39 -0.02 1.99 16 43 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.07 1.85 7.49 -2.39 -0.02 1.83 16 45 H 0.08 2.29 7.00 -2.39 -0.02 2.27 16 46 H 0.12 -0.16 8.14 -2.39 -0.02 -0.18 16 47 H 0.11 0.01 7.91 -2.39 -0.02 -0.01 16 48 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 49 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 50 H 0.40 8.84 8.21 -92.71 -0.76 8.08 16 Total: -1.00 -81.48 386.67 1.26 -80.22 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: 0.18 Total: 11.90 kcal Atomic # 6 Polarization: 11.59 SS G_CDS: 6.35 Total: 17.94 kcal Atomic # 7 Polarization: -115.43 SS G_CDS: -7.21 Total: -122.63 kcal Atomic # 8 Polarization: -35.49 SS G_CDS: -0.10 Total: -35.59 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -81.48 1.26 -80.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035802755.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.918 kcal (2) G-P(sol) polarization free energy of solvation -81.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds