Wall clock time and date at job start Tue Mar 31 2020 18:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.50108 * 2 1 4 4 C 1.53198 * 109.49873 * 239.93850 * 2 1 3 5 5 N 1.46929 * 108.77554 * 185.41433 * 4 2 1 6 6 C 1.34774 * 120.62872 * 233.63008 * 5 4 2 7 7 O 1.21619 * 119.99897 * 353.86468 * 6 5 4 8 8 C 1.47412 * 119.99879 * 173.86808 * 6 5 4 9 9 C 1.36089 * 126.45066 * 173.17371 * 8 6 5 10 10 O 1.34262 * 106.95384 * 179.89820 * 9 8 6 11 11 C 1.34051 * 108.22178 * 0.36486 * 10 9 8 12 12 C 1.50705 * 125.37555 * 179.73532 * 11 10 9 13 13 C 1.53002 * 109.46723 * 240.03945 * 12 11 10 14 14 C 1.52999 * 109.47022 * 0.03680 * 12 11 10 15 15 C 1.52996 * 109.46967 * 120.03954 * 12 11 10 16 16 N 1.29936 * 109.24462 * 359.76816 * 11 10 9 17 17 C 1.46920 * 118.73730 * 53.61283 * 5 4 2 18 18 C 1.53198 * 108.77347 * 306.38711 * 17 5 4 19 19 C 1.53036 * 109.34073 * 54.62467 * 18 17 5 20 20 H 1.08994 * 109.46250 * 58.67095 * 19 18 17 21 21 N 1.46498 * 109.46036 * 178.63204 * 19 18 17 22 22 C 1.36939 * 119.99671 * 274.99811 * 21 19 18 23 23 H 1.07997 * 119.99926 * 359.97438 * 22 21 19 24 24 C 1.38808 * 119.99685 * 180.02562 * 22 21 19 25 25 N 1.31618 * 120.00615 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 120.00063 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47264 * 89.99603 * 26 24 22 28 28 H 1.48496 * 109.47436 * 209.99867 * 26 24 22 29 29 H 1.48501 * 109.46834 * 329.99965 * 26 24 22 30 30 H 1.09002 * 109.47025 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47047 * 300.06045 * 1 2 3 32 32 H 1.08998 * 109.46695 * 60.06129 * 1 2 3 33 33 H 1.08998 * 109.58565 * 65.62298 * 4 2 1 34 34 H 1.09005 * 109.70406 * 305.27330 * 4 2 1 35 35 H 1.08002 * 126.52798 * 0.03137 * 9 8 6 36 36 H 1.08998 * 109.47239 * 60.00120 * 13 12 11 37 37 H 1.09001 * 109.46572 * 179.97438 * 13 12 11 38 38 H 1.09004 * 109.46975 * 300.00055 * 13 12 11 39 39 H 1.09000 * 109.46883 * 60.00579 * 14 12 11 40 40 H 1.09001 * 109.47106 * 179.97438 * 14 12 11 41 41 H 1.08998 * 109.47428 * 300.00179 * 14 12 11 42 42 H 1.09006 * 109.47474 * 60.00123 * 15 12 11 43 43 H 1.09001 * 109.47034 * 180.02562 * 15 12 11 44 44 H 1.09000 * 109.47568 * 299.99807 * 15 12 11 45 45 H 1.09002 * 109.58441 * 186.60366 * 17 5 4 46 46 H 1.08996 * 109.59515 * 66.17420 * 17 5 4 47 47 H 1.09006 * 109.49824 * 174.58975 * 18 17 5 48 48 H 1.09003 * 109.49724 * 294.65183 * 18 17 5 49 49 H 0.97002 * 119.99993 * 95.00158 * 21 19 18 50 50 H 0.96999 * 120.00892 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0413 -0.7234 -1.2499 5 7 3.5047 -0.8288 -1.1699 6 6 4.2812 -0.3849 -2.1780 7 8 3.7720 0.0053 -3.2113 8 6 5.7476 -0.3724 -2.0283 9 6 6.6568 -0.0781 -2.9972 10 8 7.8729 -0.1829 -2.4379 11 6 7.7151 -0.5415 -1.1559 12 6 8.8319 -0.7731 -0.1709 13 6 8.7695 -2.2134 0.3414 14 6 10.1771 -0.5346 -0.8598 15 6 8.6829 0.1936 1.0056 16 7 6.4472 -0.6586 -0.8969 17 6 4.1053 -1.4268 0.0302 18 6 3.5708 -0.6955 1.2657 19 6 2.0408 -0.7229 1.2485 20 1 1.6962 -1.7568 1.2354 21 7 1.5271 -0.0526 2.4457 22 6 1.3957 -0.7494 3.6172 23 1 1.6703 -1.7931 3.6584 24 6 0.9086 -0.1145 4.7513 25 7 0.5734 1.1573 4.7010 26 14 0.7286 -1.0651 6.3493 27 1 1.9857 -0.9590 7.1327 28 1 -0.3954 -0.4995 7.1379 29 1 0.4524 -2.4927 6.0476 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5148 0.8894 32 1 -0.3632 0.5129 -0.8905 33 1 1.7638 -0.1573 -2.1390 34 1 1.6054 -1.7212 -1.3012 35 1 6.4412 0.1908 -4.0208 36 1 8.8756 -2.9021 -0.4968 37 1 9.5776 -2.3810 1.0535 38 1 7.8111 -2.3833 0.8321 39 1 10.2215 0.4915 -1.2247 40 1 10.9848 -0.7017 -0.1472 41 1 10.2832 -1.2233 -1.6979 42 1 7.7245 0.0237 1.4964 43 1 9.4909 0.0264 1.7178 44 1 8.7273 1.2197 0.6407 45 1 5.1896 -1.3247 -0.0142 46 1 3.8375 -2.4819 0.0859 47 1 3.9334 -1.1905 2.1667 48 1 3.9164 0.3382 1.2545 49 1 1.2801 0.8847 2.4084 50 1 0.2333 1.6011 5.4936 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036028740.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:26 Heat of formation + Delta-G solvation = -3.575088 kcal Electronic energy + Delta-G solvation = -30287.528619 eV Core-core repulsion = 26316.752952 eV Total energy + Delta-G solvation = -3970.775667 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.70222 -39.89763 -37.63010 -37.28019 -35.22313 -34.36989 -32.67288 -31.36824 -30.09499 -29.20999 -27.74843 -27.62419 -26.68570 -25.15317 -23.75539 -23.39303 -22.40074 -21.56133 -20.70234 -19.51968 -18.92325 -17.49074 -17.06196 -16.99093 -16.69650 -15.87596 -15.44362 -14.93466 -14.89790 -14.50965 -14.35535 -14.09416 -13.79525 -13.68666 -13.47796 -13.25725 -13.01588 -12.69270 -12.63197 -12.41084 -12.21792 -12.02675 -11.98749 -11.90278 -11.61839 -11.52487 -11.32132 -11.26312 -11.12430 -10.91515 -10.82159 -10.67137 -10.40536 -10.23212 -10.15990 -9.80448 -9.58734 -9.50092 -9.21112 -8.80514 -8.37281 -6.90327 -5.73625 -3.01611 0.96627 1.83278 2.31356 3.03684 3.28440 3.44359 3.49753 3.51308 3.56087 4.34704 4.43087 4.46772 4.61045 4.69799 4.73688 5.18693 5.19263 5.22976 5.27503 5.31121 5.39391 5.40844 5.44951 5.50134 5.51138 5.53716 5.57252 5.62136 5.67955 5.77496 5.78927 5.87504 5.93086 5.96340 6.00483 6.13841 6.16735 6.37462 6.46383 6.52165 6.54278 6.67199 6.81795 6.90485 7.01469 7.16968 7.29722 7.60258 7.72513 8.19165 8.44835 9.56042 10.14628 10.49797 11.49087 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011576 B = 0.003433 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.183463 B = 8154.293006 C =10061.835131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.109 4.109 3 H 0.068 0.932 4 C 0.119 3.881 5 N -0.584 5.584 6 C 0.597 3.403 7 O -0.550 6.550 8 C -0.060 4.060 9 C 0.004 3.996 10 O -0.193 6.193 11 C 0.208 3.792 12 C 0.031 3.969 13 C -0.142 4.142 14 C -0.147 4.147 15 C -0.143 4.143 16 N -0.447 5.447 17 C 0.063 3.937 18 C -0.142 4.142 19 C 0.182 3.818 20 H 0.046 0.954 21 N -0.721 5.721 22 C -0.234 4.234 23 H 0.069 0.931 24 C -0.014 4.014 25 N -0.933 5.933 26 Si 0.904 3.096 27 H -0.291 1.291 28 H -0.292 1.292 29 H -0.283 1.283 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.042 0.958 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.230 0.770 36 H 0.059 0.941 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.060 0.940 45 H 0.144 0.856 46 H 0.055 0.945 47 H 0.072 0.928 48 H 0.056 0.944 49 H 0.383 0.617 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.388 -4.684 -14.268 23.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.129 4.129 3 H 0.087 0.913 4 C -0.003 4.003 5 N -0.314 5.314 6 C 0.384 3.616 7 O -0.429 6.429 8 C -0.179 4.179 9 C -0.070 4.070 10 O -0.079 6.079 11 C 0.000 4.000 12 C 0.030 3.970 13 C -0.199 4.199 14 C -0.205 4.205 15 C -0.200 4.200 16 N -0.176 5.176 17 C -0.059 4.059 18 C -0.183 4.183 19 C 0.072 3.928 20 H 0.064 0.936 21 N -0.361 5.361 22 C -0.366 4.366 23 H 0.087 0.913 24 C -0.210 4.210 25 N -0.582 5.582 26 Si 0.735 3.265 27 H -0.218 1.218 28 H -0.219 1.219 29 H -0.208 1.208 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.061 0.939 33 H 0.105 0.895 34 H 0.086 0.914 35 H 0.246 0.754 36 H 0.078 0.922 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.082 0.918 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.079 0.921 45 H 0.161 0.839 46 H 0.073 0.927 47 H 0.091 0.909 48 H 0.075 0.925 49 H 0.217 0.783 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 17.837 -4.781 -14.066 23.213 hybrid contribution -0.112 0.066 0.345 0.368 sum 17.725 -4.715 -13.721 22.905 Atomic orbital electron populations 1.21657 0.94106 1.01750 1.01803 1.21734 0.96504 0.99989 0.94684 0.91337 1.21775 0.78226 1.00955 0.99353 1.47956 1.06877 1.58334 1.18196 1.16820 0.83476 0.77832 0.83464 1.90786 1.73961 1.50027 1.28116 1.21837 0.95991 1.09646 0.90460 1.25227 0.80223 1.01283 1.00254 1.84385 1.32482 1.66001 1.25002 1.26548 0.94102 0.97504 0.81880 1.19218 0.88658 0.98431 0.90738 1.21933 1.03910 0.92493 1.01581 1.21927 0.94842 1.02784 1.00914 1.21943 1.03958 0.98091 0.96043 1.70399 1.02148 1.19152 1.25898 1.23023 1.03498 0.95893 0.83530 1.22545 0.99404 1.00308 0.96042 1.20243 0.90899 0.95459 0.86227 0.93619 1.42407 1.76628 1.11322 1.05774 1.19224 1.35537 0.94045 0.87752 0.91288 1.24708 1.02249 0.96015 0.97979 1.69657 1.50290 1.09480 1.28776 0.86234 0.77231 0.78910 0.84085 1.21828 1.21889 1.20830 0.93061 0.90727 0.93866 0.89471 0.91447 0.75424 0.92203 0.90731 0.90752 0.91778 0.90828 0.91824 0.90583 0.90756 0.92131 0.83934 0.92670 0.90944 0.92539 0.78304 0.93599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.02 37.16 0.34 -1.96 16 2 C -0.11 -1.91 2.46 -90.50 -0.22 -2.13 16 3 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 4 C 0.12 1.88 5.70 -3.71 -0.02 1.86 16 5 N -0.58 -9.34 2.97 -174.03 -0.52 -9.86 16 6 C 0.60 9.62 7.68 -12.53 -0.10 9.52 16 7 O -0.55 -9.81 16.34 5.26 0.09 -9.73 16 8 C -0.06 -0.82 6.72 -83.03 -0.56 -1.38 16 9 C 0.00 0.04 11.95 29.96 0.36 0.40 16 10 O -0.19 -2.01 10.11 6.49 0.07 -1.94 16 11 C 0.21 2.24 6.44 -13.08 -0.08 2.15 16 12 C 0.03 0.24 0.99 -155.66 -0.15 0.09 16 13 C -0.14 -1.01 8.46 37.16 0.31 -0.69 16 14 C -0.15 -0.88 8.01 37.16 0.30 -0.58 16 15 C -0.14 -1.15 8.46 37.16 0.31 -0.83 16 16 N -0.45 -5.82 7.74 -7.65 -0.06 -5.88 16 17 C 0.06 0.98 6.33 -3.71 -0.02 0.96 16 18 C -0.14 -2.60 5.66 -26.61 -0.15 -2.75 16 19 C 0.18 3.63 2.19 -67.89 -0.15 3.48 16 20 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 21 N -0.72 -17.80 4.41 -53.39 -0.24 -18.04 16 22 C -0.23 -6.40 9.93 -15.06 -0.15 -6.55 16 23 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 24 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 25 N -0.93 -28.05 13.06 55.49 0.72 -27.33 16 26 Si 0.90 22.27 29.55 -169.99 -5.02 17.25 16 27 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 28 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 29 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 1.47 7.37 -51.93 -0.38 1.08 16 32 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.09 1.38 7.04 -51.93 -0.37 1.02 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.23 1.78 8.06 -52.49 -0.42 1.36 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.14 2.13 3.67 -76.67 -0.28 1.85 16 46 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 48 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 49 H 0.38 10.19 7.51 -40.82 -0.31 9.89 16 50 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 399.13 15.07 6.01 6.01 Total: -1.00 -32.12 399.13 -7.52 -39.64 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -8.49 Total: 8.75 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: -0.09 Total: 1.11 kcal Atomic # 7 Polarization: -61.01 SS G_CDS: -0.09 Total: -61.10 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.15 Total: -11.67 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.12 -7.52 -39.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036028740.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.068 kcal (2) G-P(sol) polarization free energy of solvation -32.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds