Wall clock time and date at job start Tue Mar 31 2020 18:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.50108 * 2 1 4 4 C 1.53198 * 109.49873 * 239.93850 * 2 1 3 5 5 N 1.46929 * 108.77554 * 185.41433 * 4 2 1 6 6 C 1.34774 * 120.62872 * 233.63008 * 5 4 2 7 7 O 1.21619 * 119.99897 * 353.86468 * 6 5 4 8 8 C 1.47412 * 119.99879 * 173.86808 * 6 5 4 9 9 C 1.36089 * 126.45066 * 173.17371 * 8 6 5 10 10 O 1.34262 * 106.95384 * 179.89820 * 9 8 6 11 11 C 1.34051 * 108.22178 * 0.36486 * 10 9 8 12 12 C 1.50705 * 125.37555 * 179.73532 * 11 10 9 13 13 C 1.53002 * 109.46723 * 240.03945 * 12 11 10 14 14 C 1.52999 * 109.47022 * 0.03680 * 12 11 10 15 15 C 1.52996 * 109.46967 * 120.03954 * 12 11 10 16 16 N 1.29936 * 109.24462 * 359.76816 * 11 10 9 17 17 C 1.46920 * 118.73730 * 53.61283 * 5 4 2 18 18 C 1.53198 * 108.77347 * 306.38711 * 17 5 4 19 19 C 1.53036 * 109.34073 * 54.62467 * 18 17 5 20 20 H 1.08994 * 109.46250 * 58.67095 * 19 18 17 21 21 N 1.46498 * 109.46036 * 178.63204 * 19 18 17 22 22 C 1.36939 * 119.99671 * 274.99811 * 21 19 18 23 23 H 1.07997 * 119.99926 * 359.97438 * 22 21 19 24 24 C 1.38808 * 119.99685 * 180.02562 * 22 21 19 25 25 N 1.31618 * 120.00615 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 120.00063 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47264 * 89.99603 * 26 24 22 28 28 H 1.48496 * 109.47436 * 209.99867 * 26 24 22 29 29 H 1.48501 * 109.46834 * 329.99965 * 26 24 22 30 30 H 1.09002 * 109.47025 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47047 * 300.06045 * 1 2 3 32 32 H 1.08998 * 109.46695 * 60.06129 * 1 2 3 33 33 H 1.08998 * 109.58565 * 65.62298 * 4 2 1 34 34 H 1.09005 * 109.70406 * 305.27330 * 4 2 1 35 35 H 1.08002 * 126.52798 * 0.03137 * 9 8 6 36 36 H 1.08998 * 109.47239 * 60.00120 * 13 12 11 37 37 H 1.09001 * 109.46572 * 179.97438 * 13 12 11 38 38 H 1.09004 * 109.46975 * 300.00055 * 13 12 11 39 39 H 1.09000 * 109.46883 * 60.00579 * 14 12 11 40 40 H 1.09001 * 109.47106 * 179.97438 * 14 12 11 41 41 H 1.08998 * 109.47428 * 300.00179 * 14 12 11 42 42 H 1.09006 * 109.47474 * 60.00123 * 15 12 11 43 43 H 1.09001 * 109.47034 * 180.02562 * 15 12 11 44 44 H 1.09000 * 109.47568 * 299.99807 * 15 12 11 45 45 H 1.09002 * 109.58441 * 186.60366 * 17 5 4 46 46 H 1.08996 * 109.59515 * 66.17420 * 17 5 4 47 47 H 1.09006 * 109.49824 * 174.58975 * 18 17 5 48 48 H 1.09003 * 109.49724 * 294.65183 * 18 17 5 49 49 H 0.97002 * 119.99993 * 95.00158 * 21 19 18 50 50 H 0.96999 * 120.00892 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0413 -0.7234 -1.2499 5 7 3.5047 -0.8288 -1.1699 6 6 4.2812 -0.3849 -2.1780 7 8 3.7720 0.0053 -3.2113 8 6 5.7476 -0.3724 -2.0283 9 6 6.6568 -0.0781 -2.9972 10 8 7.8729 -0.1829 -2.4379 11 6 7.7151 -0.5415 -1.1559 12 6 8.8319 -0.7731 -0.1709 13 6 8.7695 -2.2134 0.3414 14 6 10.1771 -0.5346 -0.8598 15 6 8.6829 0.1936 1.0056 16 7 6.4472 -0.6586 -0.8969 17 6 4.1053 -1.4268 0.0302 18 6 3.5708 -0.6955 1.2657 19 6 2.0408 -0.7229 1.2485 20 1 1.6962 -1.7568 1.2354 21 7 1.5271 -0.0526 2.4457 22 6 1.3957 -0.7494 3.6172 23 1 1.6703 -1.7931 3.6584 24 6 0.9086 -0.1145 4.7513 25 7 0.5734 1.1573 4.7010 26 14 0.7286 -1.0651 6.3493 27 1 1.9857 -0.9590 7.1327 28 1 -0.3954 -0.4995 7.1379 29 1 0.4524 -2.4927 6.0476 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5148 0.8894 32 1 -0.3632 0.5129 -0.8905 33 1 1.7638 -0.1573 -2.1390 34 1 1.6054 -1.7212 -1.3012 35 1 6.4412 0.1908 -4.0208 36 1 8.8756 -2.9021 -0.4968 37 1 9.5776 -2.3810 1.0535 38 1 7.8111 -2.3833 0.8321 39 1 10.2215 0.4915 -1.2247 40 1 10.9848 -0.7017 -0.1472 41 1 10.2832 -1.2233 -1.6979 42 1 7.7245 0.0237 1.4964 43 1 9.4909 0.0264 1.7178 44 1 8.7273 1.2197 0.6407 45 1 5.1896 -1.3247 -0.0142 46 1 3.8375 -2.4819 0.0859 47 1 3.9334 -1.1905 2.1667 48 1 3.9164 0.3382 1.2545 49 1 1.2801 0.8847 2.4084 50 1 0.2333 1.6011 5.4936 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036028740.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:25 Heat of formation + Delta-G solvation = -23.969070 kcal Electronic energy + Delta-G solvation = -30288.412969 eV Core-core repulsion = 26316.752952 eV Total energy + Delta-G solvation = -3971.660016 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.59090 -41.20134 -39.05393 -37.94249 -36.39273 -35.84869 -34.30683 -33.04993 -31.15117 -30.87295 -28.31602 -28.21769 -27.92147 -26.82947 -25.14191 -24.29994 -23.81493 -23.07326 -21.73914 -20.90640 -19.94804 -19.07619 -18.53651 -17.91556 -17.73028 -17.05122 -16.75863 -16.23106 -16.16213 -15.75480 -15.48768 -15.32418 -15.01011 -14.93113 -14.80480 -14.53060 -14.33517 -14.02710 -13.66179 -13.36158 -13.24649 -13.08273 -13.00718 -12.85075 -12.79224 -12.59982 -12.58244 -12.50518 -12.42564 -12.22992 -12.13464 -11.96295 -11.90931 -11.86904 -11.73444 -11.49777 -11.18020 -11.07359 -10.57644 -10.14119 -9.67595 -8.95361 -7.90693 -5.18574 0.03723 0.86996 1.48342 1.49443 1.49638 1.57858 1.87196 2.13763 2.58196 2.68601 3.40276 3.44053 3.67859 3.77351 3.79844 3.88990 3.93751 4.03245 4.05919 4.16580 4.34117 4.36017 4.41717 4.46631 4.56425 4.63912 4.70698 4.74689 4.75441 4.76240 4.82294 4.85476 4.92981 4.96632 4.96937 5.01787 5.04977 5.14500 5.24552 5.27522 5.35120 5.36088 5.40348 5.46318 5.51997 5.55205 5.73254 6.23195 6.30627 6.47566 6.96007 7.36790 8.12032 8.36706 9.32955 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011576 B = 0.003433 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.183463 B = 8154.293006 C =10061.835131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.099 4.099 3 H 0.051 0.949 4 C 0.125 3.875 5 N -0.590 5.590 6 C 0.596 3.404 7 O -0.571 6.571 8 C -0.097 4.097 9 C 0.030 3.970 10 O -0.186 6.186 11 C 0.213 3.787 12 C 0.030 3.970 13 C -0.139 4.139 14 C -0.143 4.143 15 C -0.141 4.141 16 N -0.471 5.471 17 C 0.074 3.926 18 C -0.128 4.128 19 C 0.179 3.821 20 H 0.045 0.955 21 N -0.731 5.731 22 C -0.232 4.232 23 H 0.075 0.925 24 C -0.075 4.075 25 N -0.971 5.971 26 Si 0.969 3.031 27 H -0.288 1.288 28 H -0.299 1.299 29 H -0.269 1.269 30 H 0.059 0.941 31 H 0.041 0.959 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.259 0.741 36 H 0.063 0.937 37 H 0.096 0.904 38 H 0.055 0.945 39 H 0.061 0.939 40 H 0.094 0.906 41 H 0.066 0.934 42 H 0.051 0.949 43 H 0.097 0.903 44 H 0.055 0.945 45 H 0.155 0.845 46 H 0.066 0.934 47 H 0.060 0.940 48 H 0.036 0.964 49 H 0.370 0.630 50 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.444 -6.168 -15.334 26.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.119 4.119 3 H 0.069 0.931 4 C 0.003 3.997 5 N -0.319 5.319 6 C 0.385 3.615 7 O -0.452 6.452 8 C -0.216 4.216 9 C -0.044 4.044 10 O -0.072 6.072 11 C 0.004 3.996 12 C 0.029 3.971 13 C -0.197 4.197 14 C -0.200 4.200 15 C -0.199 4.199 16 N -0.200 5.200 17 C -0.049 4.049 18 C -0.169 4.169 19 C 0.070 3.930 20 H 0.063 0.937 21 N -0.370 5.370 22 C -0.364 4.364 23 H 0.093 0.907 24 C -0.267 4.267 25 N -0.622 5.622 26 Si 0.798 3.202 27 H -0.216 1.216 28 H -0.226 1.226 29 H -0.194 1.194 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.086 0.914 33 H 0.108 0.892 34 H 0.102 0.898 35 H 0.274 0.726 36 H 0.082 0.918 37 H 0.115 0.885 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.113 0.887 41 H 0.085 0.915 42 H 0.070 0.930 43 H 0.116 0.884 44 H 0.074 0.926 45 H 0.171 0.829 46 H 0.085 0.915 47 H 0.079 0.921 48 H 0.055 0.945 49 H 0.202 0.798 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 19.915 -6.307 -15.159 25.810 hybrid contribution -0.673 0.541 0.601 1.052 sum 19.242 -5.765 -14.559 24.808 Atomic orbital electron populations 1.21566 0.93509 1.02125 1.01386 1.21600 0.96944 0.98906 0.94488 0.93080 1.21703 0.78437 1.01553 0.98014 1.48004 1.06973 1.58597 1.18353 1.17095 0.84497 0.76952 0.82973 1.90760 1.74716 1.50931 1.28822 1.21667 0.95192 1.12828 0.91894 1.25760 0.79616 0.98308 1.00697 1.84435 1.32136 1.65726 1.24884 1.27154 0.94091 0.96126 0.82246 1.19446 0.88777 0.98797 0.90109 1.21937 1.03776 0.91931 1.02063 1.21924 0.93971 1.02730 1.01387 1.21942 1.03531 0.97944 0.96492 1.70203 1.03244 1.20433 1.26135 1.22964 1.04151 0.95806 0.81960 1.22321 0.98009 0.99391 0.97219 1.20437 0.91724 0.95146 0.85644 0.93684 1.42568 1.76929 1.10771 1.06684 1.19590 1.33842 0.94348 0.88576 0.90661 1.25486 1.03058 0.96932 1.01259 1.69822 1.52058 1.11121 1.29245 0.85200 0.76729 0.78170 0.80053 1.21555 1.22563 1.19391 0.92233 0.93958 0.91408 0.89198 0.89780 0.72553 0.91832 0.88524 0.92587 0.92009 0.88743 0.91482 0.93014 0.88424 0.92584 0.82862 0.91536 0.92099 0.94525 0.79820 0.94240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.32 9.02 71.98 0.65 -3.67 16 2 C -0.10 -3.50 2.46 -10.71 -0.03 -3.53 16 3 H 0.05 1.97 8.14 -2.39 -0.02 1.96 16 4 C 0.13 3.84 5.70 86.36 0.49 4.33 16 5 N -0.59 -18.52 2.97 -822.77 -2.45 -20.97 16 6 C 0.60 18.78 7.68 86.66 0.67 19.45 16 7 O -0.57 -19.89 16.34 -4.09 -0.07 -19.96 16 8 C -0.10 -2.58 6.72 40.40 0.27 -2.31 16 9 C 0.03 0.60 11.95 67.32 0.80 1.40 16 10 O -0.19 -3.47 10.11 0.32 0.00 -3.47 16 11 C 0.21 4.27 6.44 88.39 0.57 4.84 16 12 C 0.03 0.42 0.99 -52.93 -0.05 0.37 16 13 C -0.14 -1.72 8.46 71.98 0.61 -1.11 16 14 C -0.14 -1.30 8.01 71.98 0.58 -0.72 16 15 C -0.14 -2.10 8.46 71.98 0.61 -1.49 16 16 N -0.47 -11.95 7.74 -293.04 -2.27 -14.22 16 17 C 0.07 2.27 6.33 86.37 0.55 2.81 16 18 C -0.13 -4.79 5.66 30.67 0.17 -4.62 16 19 C 0.18 7.23 2.19 45.02 0.10 7.33 16 20 H 0.05 1.84 8.08 -2.39 -0.02 1.82 16 21 N -0.73 -37.04 4.41 -322.83 -1.42 -38.46 16 22 C -0.23 -12.79 9.93 84.03 0.83 -11.96 16 23 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 24 C -0.08 -4.33 5.50 84.86 0.47 -3.87 16 25 N -0.97 -59.94 13.06 21.65 0.28 -59.66 16 26 Si 0.97 46.25 29.55 68.60 2.03 48.27 16 27 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 28 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 29 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 30 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.04 1.70 7.37 -2.39 -0.02 1.68 16 32 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.09 2.75 7.04 -2.39 -0.02 2.73 16 34 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 35 H 0.26 3.28 8.06 -2.91 -0.02 3.25 16 36 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 39 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 43 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.16 4.54 3.67 -51.25 -0.19 4.35 16 46 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 47 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 48 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 49 H 0.37 20.52 7.51 -92.71 -0.70 19.83 16 50 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -70.32 399.13 3.45 -66.86 By element: Atomic # 1 Polarization: 34.30 SS G_CDS: 0.05 Total: 34.35 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: 7.29 Total: 7.24 kcal Atomic # 7 Polarization: -127.45 SS G_CDS: -5.85 Total: -133.30 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.06 Total: -23.43 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.27 kcal Total: -70.32 3.45 -66.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036028740.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.895 kcal (2) G-P(sol) polarization free energy of solvation -70.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds