Wall clock time and date at job start Tue Mar 31 2020 18:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.52447 * 2 1 4 4 C 1.53198 * 109.49586 * 239.91759 * 2 1 3 5 5 N 1.46934 * 108.77331 * 185.41408 * 4 2 1 6 6 C 1.34774 * 120.62600 * 233.61012 * 5 4 2 7 7 O 1.21490 * 120.00269 * 355.08615 * 6 5 4 8 8 C 1.48332 * 119.99622 * 175.08989 * 6 5 4 9 9 C 1.42269 * 126.93992 * 186.25286 * 8 6 5 10 10 C 1.35309 * 103.92482 * 179.90954 * 9 8 6 11 11 C 1.50701 * 126.66961 * 180.12934 * 10 9 8 12 12 C 1.52997 * 109.46843 * 60.28211 * 11 10 9 13 13 C 1.53001 * 109.47097 * 180.28281 * 11 10 9 14 14 C 1.52996 * 109.47047 * 300.28406 * 11 10 9 15 15 O 1.34021 * 106.66990 * 0.34549 * 10 9 8 16 16 N 1.20904 * 111.84032 * 359.76294 * 15 10 9 17 17 C 1.46920 * 118.73627 * 53.60928 * 5 4 2 18 18 C 1.53188 * 108.77977 * 306.39073 * 17 5 4 19 19 C 1.53038 * 109.31481 * 54.63342 * 18 17 5 20 20 H 1.08996 * 109.46117 * 178.61477 * 19 18 17 21 21 N 1.46505 * 109.45449 * 58.65789 * 19 18 17 22 22 C 1.36936 * 119.99920 * 84.93837 * 21 19 18 23 23 H 1.07994 * 120.00086 * 359.97438 * 22 21 19 24 24 C 1.38811 * 119.99939 * 179.97438 * 22 21 19 25 25 N 1.31621 * 119.99852 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00120 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.46847 * 59.99763 * 26 24 22 28 28 H 1.48500 * 109.47098 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.47244 * 300.00076 * 26 24 22 30 30 H 1.09001 * 109.46675 * 299.92085 * 1 2 3 31 31 H 1.08997 * 109.46961 * 59.91929 * 1 2 3 32 32 H 1.08995 * 109.47095 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.58527 * 305.19891 * 4 2 1 34 34 H 1.08997 * 109.58745 * 65.63141 * 4 2 1 35 35 H 1.08004 * 128.03836 * 0.02562 * 9 8 6 36 36 H 1.08998 * 109.47584 * 60.00145 * 12 11 10 37 37 H 1.09007 * 109.46718 * 180.02562 * 12 11 10 38 38 H 1.09000 * 109.47349 * 299.99715 * 12 11 10 39 39 H 1.08989 * 109.47236 * 60.00301 * 13 11 10 40 40 H 1.09007 * 109.46799 * 179.97438 * 13 11 10 41 41 H 1.08998 * 109.46965 * 299.99631 * 13 11 10 42 42 H 1.09004 * 109.47457 * 59.99593 * 14 11 10 43 43 H 1.08998 * 109.47720 * 179.97438 * 14 11 10 44 44 H 1.09006 * 109.47237 * 299.99602 * 14 11 10 45 45 H 1.09003 * 109.58715 * 186.60329 * 17 5 4 46 46 H 1.09002 * 109.58804 * 66.18085 * 17 5 4 47 47 H 1.09003 * 109.49812 * 294.68548 * 18 17 5 48 48 H 1.08999 * 109.50202 * 174.58965 * 18 17 5 49 49 H 0.97001 * 119.99907 * 264.92869 * 21 19 18 50 50 H 0.97001 * 119.99859 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7239 -1.2496 5 7 3.5047 -0.8292 -1.1696 6 6 4.2811 -0.3861 -2.1781 7 8 3.7717 0.0237 -3.2021 8 6 5.7577 -0.3988 -2.0379 9 6 6.7077 0.1430 -2.9479 10 6 7.9014 -0.1213 -2.3682 11 6 9.2624 0.2380 -2.9063 12 6 9.3667 1.7571 -3.0564 13 6 10.3399 -0.2539 -1.9379 14 6 9.4624 -0.4242 -4.2710 15 8 7.6385 -0.7690 -1.2248 16 7 6.4506 -0.9159 -1.0540 17 6 4.1053 -1.4267 0.0307 18 6 3.5709 -0.6951 1.2660 19 6 2.0408 -0.7231 1.2483 20 1 1.6583 -0.2245 2.1389 21 7 1.5784 -2.1131 1.2308 22 6 1.4481 -2.8062 2.4046 23 1 1.6867 -2.3283 3.3432 24 6 1.0094 -4.1230 2.3880 25 7 0.7182 -4.7053 1.2441 26 14 0.8324 -5.0688 3.9892 27 1 -0.1443 -4.3762 4.8677 28 1 0.3506 -6.4436 3.7013 29 1 2.1496 -5.1380 4.6715 30 1 -0.3633 0.5126 0.8907 31 1 -0.3633 0.5151 -0.8892 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6052 -1.7217 -1.2980 34 1 1.7638 -0.1580 -2.1389 35 1 6.5197 0.6494 -3.8832 36 1 9.2242 2.2289 -2.0842 37 1 10.3510 2.0170 -3.4460 38 1 8.5991 2.1076 -3.7464 39 1 10.2657 -1.3360 -1.8310 40 1 11.3244 0.0056 -2.3274 41 1 10.1974 0.2179 -0.9657 42 1 8.6948 -0.0737 -4.9609 43 1 10.4466 -0.1639 -4.6605 44 1 9.3882 -1.5064 -4.1641 45 1 5.1896 -1.3247 -0.0137 46 1 3.8375 -2.4819 0.0867 47 1 3.9159 0.3388 1.2541 48 1 3.9334 -1.1897 2.1671 49 1 1.3643 -2.5424 0.3877 50 1 0.4120 -5.6256 1.2325 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036102392.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:05 Heat of formation + Delta-G solvation = 38.606712 kcal Electronic energy + Delta-G solvation = -30230.172791 eV Core-core repulsion = 26261.226264 eV Total energy + Delta-G solvation = -3968.946527 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.16637 -39.96481 -37.73975 -37.67149 -34.52089 -33.88509 -32.73369 -31.39755 -31.01094 -29.15607 -27.84953 -27.72424 -26.69875 -25.36916 -23.73874 -23.43863 -23.20633 -21.63089 -21.27072 -19.15606 -18.15681 -17.84020 -17.53579 -17.18843 -16.61485 -15.74179 -15.08326 -15.02540 -14.55693 -14.48261 -14.43377 -14.23977 -13.97051 -13.80684 -13.49787 -13.29304 -12.93017 -12.79803 -12.74661 -12.51974 -12.34030 -12.10081 -11.90280 -11.76757 -11.51407 -11.47627 -11.28745 -11.26468 -11.02442 -10.85224 -10.76206 -10.51425 -10.45713 -10.23559 -10.20386 -9.84095 -9.82675 -9.57770 -9.53220 -8.89244 -8.27079 -6.95868 -5.77182 -3.05569 1.09331 1.60157 2.70334 3.05331 3.26902 3.43358 3.48356 3.48919 3.93805 4.12122 4.42673 4.45641 4.58956 4.65712 4.88592 4.94048 5.11597 5.18269 5.26672 5.28403 5.34228 5.34663 5.40950 5.44665 5.45864 5.54404 5.62758 5.65962 5.68155 5.78225 5.82325 5.83752 5.88638 5.92419 5.95677 6.05512 6.14375 6.27724 6.41331 6.47421 6.52197 6.64136 6.74081 6.78828 6.95380 7.01421 7.58743 7.69730 7.97778 8.25154 8.41295 9.52681 10.09352 10.44606 11.45285 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016014 B = 0.002941 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.038896 B = 9517.547082 C =10511.812927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.065 0.935 4 C 0.119 3.881 5 N -0.581 5.581 6 C 0.590 3.410 7 O -0.539 6.539 8 C -0.012 4.012 9 C -0.180 4.180 10 C -0.023 4.023 11 C 0.016 3.984 12 C -0.142 4.142 13 C -0.148 4.148 14 C -0.142 4.142 15 O 0.114 5.886 16 N -0.322 5.322 17 C 0.084 3.916 18 C -0.146 4.146 19 C 0.178 3.822 20 H 0.051 0.949 21 N -0.718 5.718 22 C -0.237 4.237 23 H 0.069 0.931 24 C -0.012 4.012 25 N -0.933 5.933 26 Si 0.905 3.095 27 H -0.287 1.287 28 H -0.292 1.292 29 H -0.287 1.287 30 H 0.054 0.946 31 H 0.044 0.956 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.177 0.823 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.114 0.886 46 H 0.084 0.916 47 H 0.045 0.955 48 H 0.074 0.926 49 H 0.383 0.617 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.979 12.800 -9.601 24.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.128 4.128 3 H 0.084 0.916 4 C -0.003 4.003 5 N -0.312 5.312 6 C 0.376 3.624 7 O -0.416 6.416 8 C -0.171 4.171 9 C -0.202 4.202 10 C -0.087 4.087 11 C 0.015 3.985 12 C -0.199 4.199 13 C -0.205 4.205 14 C -0.199 4.199 15 O 0.044 5.956 16 N -0.026 5.026 17 C -0.039 4.039 18 C -0.187 4.187 19 C 0.067 3.933 20 H 0.069 0.931 21 N -0.361 5.361 22 C -0.368 4.368 23 H 0.087 0.913 24 C -0.208 4.208 25 N -0.581 5.581 26 Si 0.736 3.264 27 H -0.214 1.214 28 H -0.218 1.218 29 H -0.213 1.213 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.194 0.806 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.090 0.910 44 H 0.082 0.918 45 H 0.131 0.869 46 H 0.102 0.898 47 H 0.064 0.936 48 H 0.093 0.907 49 H 0.219 0.781 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 17.279 12.282 -8.844 22.970 hybrid contribution -0.283 -0.469 0.099 0.557 sum 16.996 11.813 -8.745 22.469 Atomic orbital electron populations 1.21662 0.94024 1.03273 1.00489 1.21713 0.96614 0.98801 0.95682 0.91627 1.21756 0.77763 1.01962 0.98802 1.48033 1.07250 1.57866 1.18069 1.16993 0.83153 0.78562 0.83732 1.90746 1.73495 1.48944 1.28416 1.23559 0.96986 1.02955 0.93586 1.22290 0.89417 1.05794 1.02727 1.24413 0.97956 0.98439 0.87842 1.19189 0.86563 0.96896 0.95897 1.21949 1.02840 0.92278 1.02835 1.21914 0.97553 1.02178 0.98895 1.21953 1.02684 1.01110 0.94202 1.84830 1.19991 1.55577 1.35215 1.74044 0.89257 1.18381 1.20957 1.22573 0.99760 0.98596 0.82926 1.22488 1.00145 0.98464 0.97609 1.20237 0.90924 0.87376 0.94742 0.93098 1.42461 1.78959 1.07703 1.06935 1.19171 1.37174 0.93924 0.86543 0.91310 1.24706 1.02309 0.97173 0.96622 1.69641 1.51678 1.13110 1.23719 0.86302 0.77747 0.79199 0.83123 1.21377 1.21811 1.21345 0.92717 0.93713 0.90960 0.90216 0.89638 0.80553 0.91879 0.91049 0.91773 0.91630 0.91375 0.91654 0.91752 0.91048 0.91833 0.86930 0.89755 0.93628 0.90707 0.78137 0.93490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.05 37.16 0.34 -1.91 16 2 C -0.11 -1.85 2.67 -90.50 -0.24 -2.09 16 3 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 4 C 0.12 2.13 5.41 -3.70 -0.02 2.11 16 5 N -0.58 -10.50 2.97 -173.70 -0.52 -11.01 16 6 C 0.59 10.57 7.72 -12.11 -0.09 10.48 16 7 O -0.54 -10.56 16.39 5.37 0.09 -10.47 16 8 C -0.01 -0.19 6.95 -82.53 -0.57 -0.76 16 9 C -0.18 -2.17 10.41 -39.08 -0.41 -2.58 16 10 C -0.02 -0.24 5.76 -35.35 -0.20 -0.44 16 11 C 0.02 0.11 0.94 -155.66 -0.15 -0.04 16 12 C -0.14 -0.79 8.36 37.16 0.31 -0.48 16 13 C -0.15 -0.89 8.07 37.16 0.30 -0.59 16 14 C -0.14 -0.82 8.36 37.16 0.31 -0.51 16 15 O 0.11 1.44 10.65 17.23 0.18 1.62 16 16 N -0.32 -4.85 8.51 33.30 0.28 -4.57 16 17 C 0.08 1.54 6.07 -3.72 -0.02 1.51 16 18 C -0.15 -2.65 5.78 -26.61 -0.15 -2.81 16 19 C 0.18 3.47 2.53 -67.89 -0.17 3.30 16 20 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 21 N -0.72 -17.06 3.64 -53.39 -0.19 -17.26 16 22 C -0.24 -6.33 9.93 -15.06 -0.15 -6.48 16 23 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 24 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 25 N -0.93 -27.63 13.06 55.49 0.72 -26.90 16 26 Si 0.91 22.19 29.55 -169.99 -5.02 17.16 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 28 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 29 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.07 1.37 7.53 -51.93 -0.39 0.98 16 33 H 0.08 1.56 6.64 -51.93 -0.34 1.22 16 34 H 0.09 1.49 7.03 -51.93 -0.37 1.12 16 35 H 0.18 1.83 8.06 -52.48 -0.42 1.40 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.06 0.36 8.03 -51.93 -0.42 -0.06 16 39 H 0.06 0.42 8.14 -51.94 -0.42 0.00 16 40 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.38 8.03 -51.93 -0.42 -0.04 16 43 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.11 1.97 3.76 -74.14 -0.28 1.69 16 46 H 0.08 1.80 7.74 -51.93 -0.40 1.39 16 47 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 48 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 49 H 0.38 9.75 5.92 -40.82 -0.24 9.51 16 50 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 394.26 15.07 5.94 5.94 Total: -1.00 -30.90 394.26 -7.85 -38.75 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -8.32 Total: 8.45 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: -1.02 Total: -1.72 kcal Atomic # 7 Polarization: -60.04 SS G_CDS: 0.30 Total: -59.74 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.27 Total: -8.85 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -30.90 -7.85 -38.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036102392.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.361 kcal (2) G-P(sol) polarization free energy of solvation -30.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds