Wall clock time and date at job start Tue Mar 31 2020 18:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.52049 * 2 1 4 4 C 1.53190 * 109.49981 * 239.92041 * 2 1 3 5 5 N 1.46924 * 108.77514 * 185.40856 * 4 2 1 6 6 C 1.34777 * 120.63291 * 233.58266 * 5 4 2 7 7 O 1.21489 * 119.99708 * 354.82142 * 6 5 4 8 8 C 1.48332 * 120.00076 * 174.81932 * 6 5 4 9 9 C 1.42267 * 126.93761 * 186.12265 * 8 6 5 10 10 C 1.35323 * 103.91930 * 179.88966 * 9 8 6 11 11 C 1.50703 * 126.66159 * 180.08430 * 10 9 8 12 12 C 1.52998 * 109.47500 * 60.31404 * 11 10 9 13 13 C 1.53001 * 109.46689 * 180.31763 * 11 10 9 14 14 C 1.53002 * 109.46863 * 300.31360 * 11 10 9 15 15 O 1.34010 * 106.66704 * 0.36547 * 10 9 8 16 16 N 1.20901 * 111.84971 * 359.74990 * 15 10 9 17 17 C 1.46933 * 118.73543 * 53.86275 * 5 4 2 18 18 C 1.53622 * 108.54270 * 306.08688 * 17 5 4 19 19 C 1.53043 * 109.49950 * 120.07687 * 2 1 3 20 20 H 1.09001 * 109.45517 * 61.29898 * 19 2 1 21 21 N 1.46497 * 109.46131 * 301.34353 * 19 2 1 22 22 C 1.36935 * 120.00016 * 154.99805 * 21 19 2 23 23 H 1.07995 * 120.00180 * 359.97438 * 22 21 19 24 24 C 1.38810 * 119.99827 * 179.97438 * 22 21 19 25 25 N 1.31614 * 120.00249 * 359.97438 * 24 22 21 26 26 Si 1.86809 * 119.99840 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.46934 * 60.00033 * 26 24 22 28 28 H 1.48500 * 109.46945 * 179.97438 * 26 24 22 29 29 H 1.48491 * 109.46984 * 299.99998 * 26 24 22 30 30 H 1.09003 * 109.46716 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47369 * 300.07830 * 1 2 3 32 32 H 1.08997 * 109.47174 * 60.08412 * 1 2 3 33 33 H 1.08996 * 109.58638 * 65.62493 * 4 2 1 34 34 H 1.08994 * 109.70289 * 305.26739 * 4 2 1 35 35 H 1.07995 * 128.04310 * 0.02562 * 9 8 6 36 36 H 1.09009 * 109.46574 * 60.00244 * 12 11 10 37 37 H 1.09005 * 109.47135 * 179.97438 * 12 11 10 38 38 H 1.08996 * 109.47002 * 300.00319 * 12 11 10 39 39 H 1.09002 * 109.47151 * 60.00147 * 13 11 10 40 40 H 1.08999 * 109.46914 * 179.97438 * 13 11 10 41 41 H 1.08993 * 109.47151 * 299.99760 * 13 11 10 42 42 H 1.08998 * 109.47306 * 60.00520 * 14 11 10 43 43 H 1.08999 * 109.47200 * 180.02562 * 14 11 10 44 44 H 1.08994 * 109.47401 * 300.00244 * 14 11 10 45 45 H 1.09000 * 109.58640 * 65.92483 * 17 5 4 46 46 H 1.09008 * 109.58203 * 186.35183 * 17 5 4 47 47 H 1.08997 * 109.63697 * 294.87249 * 18 17 5 48 48 H 1.09004 * 109.45719 * 174.73776 * 18 17 5 49 49 H 0.97003 * 119.99995 * 334.99935 * 21 19 2 50 50 H 0.97011 * 120.00082 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0413 -0.7238 -1.2496 5 7 3.5046 -0.8289 -1.1696 6 6 4.2811 -0.3862 -2.1783 7 8 3.7718 0.0186 -3.2043 8 6 5.7576 -0.3932 -2.0358 9 6 6.7070 0.1468 -2.9473 10 6 7.9008 -0.1100 -2.3640 11 6 9.2614 0.2504 -2.9025 12 6 9.3613 1.7689 -3.0614 13 6 10.3391 -0.2326 -1.9297 14 6 9.4652 -0.4192 -4.2630 15 8 7.6382 -0.7524 -1.2177 16 7 6.4506 -0.9027 -1.0479 17 6 4.1051 -1.4316 0.0284 18 6 3.5709 -0.6948 1.2660 19 6 2.0408 -0.7230 1.2484 20 1 1.6968 -1.7572 1.2353 21 7 1.5265 -0.0529 2.4453 22 6 1.3964 -0.7492 3.6172 23 1 1.6726 -1.7924 3.6591 24 6 0.9095 -0.1141 4.7514 25 7 0.5734 1.1574 4.7006 26 14 0.7327 -1.0638 6.3504 27 1 2.0610 -1.5786 6.7697 28 1 0.1959 -0.1646 7.4033 29 1 -0.1986 -2.2027 6.1492 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5150 0.8892 32 1 -0.3633 0.5125 -0.8907 33 1 1.7638 -0.1579 -2.1388 34 1 1.6055 -1.7215 -1.3005 35 1 6.5188 0.6474 -3.8855 36 1 9.2161 2.2459 -2.0920 37 1 10.3457 2.0295 -3.4504 38 1 8.5935 2.1129 -3.7543 39 1 10.2679 -1.3144 -1.8166 40 1 11.3232 0.0276 -2.3193 41 1 10.1939 0.2444 -0.9605 42 1 8.6975 -0.0752 -4.9560 43 1 10.4495 -0.1590 -4.6522 44 1 9.3941 -1.5009 -4.1498 45 1 3.8339 -2.4860 0.0820 46 1 5.1897 -1.3329 -0.0175 47 1 3.9159 0.3391 1.2541 48 1 3.9334 -1.1890 2.1674 49 1 1.2780 0.8840 2.4076 50 1 0.2328 1.6011 5.4932 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036102395.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:13 Heat of formation + Delta-G solvation = 18.375259 kcal Electronic energy + Delta-G solvation = -29805.144407 eV Core-core repulsion = 25835.320578 eV Total energy + Delta-G solvation = -3969.823829 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -46.23640 -41.38068 -39.14995 -38.28465 -36.34468 -35.29527 -34.30120 -33.11392 -31.99743 -31.11403 -28.49415 -28.15300 -27.92760 -26.97838 -25.42910 -24.40915 -23.98574 -23.16147 -22.23044 -21.09338 -19.82696 -19.08003 -18.90631 -18.55798 -17.76011 -17.16348 -16.80165 -16.35901 -15.94071 -15.68734 -15.49593 -15.25958 -14.97278 -14.96281 -14.92109 -14.67854 -14.36598 -14.07665 -13.75272 -13.54167 -13.20022 -13.11053 -13.00720 -12.86951 -12.81001 -12.61909 -12.55166 -12.50083 -12.29284 -12.21482 -12.01202 -11.93218 -11.85909 -11.78283 -11.64306 -11.60935 -11.38495 -11.22567 -10.83792 -10.49106 -9.87030 -8.99884 -7.93219 -5.21391 -0.04687 0.61148 1.46726 1.49165 1.55047 1.56970 1.90281 1.94190 2.55940 2.71739 3.23788 3.39630 3.61747 3.71880 3.78385 3.84848 3.93167 3.95841 3.96787 4.07658 4.17744 4.26540 4.33689 4.38422 4.42840 4.65058 4.69120 4.74047 4.79434 4.79634 4.80766 4.84486 4.90443 4.95409 4.98631 5.02223 5.02357 5.11161 5.13458 5.22690 5.30683 5.35218 5.40687 5.42231 5.43826 5.51777 5.55606 6.09050 6.27800 6.70290 7.02085 7.34364 8.09038 8.33463 9.30060 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016108 B = 0.002675 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.891921 B =10465.400550 C =11592.075120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.100 4.100 3 H 0.053 0.947 4 C 0.126 3.874 5 N -0.591 5.591 6 C 0.592 3.408 7 O -0.556 6.556 8 C -0.038 4.038 9 C -0.186 4.186 10 C -0.002 4.002 11 C 0.016 3.984 12 C -0.143 4.143 13 C -0.149 4.149 14 C -0.141 4.141 15 O 0.120 5.880 16 N -0.343 5.343 17 C 0.085 3.915 18 C -0.136 4.136 19 C 0.180 3.820 20 H 0.050 0.950 21 N -0.730 5.730 22 C -0.234 4.234 23 H 0.076 0.924 24 C -0.076 4.076 25 N -0.970 5.970 26 Si 0.969 3.031 27 H -0.279 1.279 28 H -0.298 1.298 29 H -0.278 1.278 30 H 0.060 0.940 31 H 0.042 0.958 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.192 0.808 36 H 0.053 0.947 37 H 0.094 0.906 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.090 0.910 41 H 0.057 0.943 42 H 0.063 0.937 43 H 0.093 0.907 44 H 0.058 0.942 45 H 0.082 0.918 46 H 0.128 0.872 47 H 0.039 0.961 48 H 0.064 0.936 49 H 0.371 0.629 50 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.386 -3.541 -20.311 28.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.120 4.120 3 H 0.072 0.928 4 C 0.004 3.996 5 N -0.322 5.322 6 C 0.379 3.621 7 O -0.434 6.434 8 C -0.195 4.195 9 C -0.209 4.209 10 C -0.066 4.066 11 C 0.015 3.985 12 C -0.200 4.200 13 C -0.207 4.207 14 C -0.198 4.198 15 O 0.048 5.952 16 N -0.046 5.046 17 C -0.038 4.038 18 C -0.177 4.177 19 C 0.071 3.929 20 H 0.068 0.932 21 N -0.369 5.369 22 C -0.366 4.366 23 H 0.094 0.906 24 C -0.268 4.268 25 N -0.621 5.621 26 Si 0.799 3.201 27 H -0.205 1.205 28 H -0.225 1.225 29 H -0.204 1.204 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.112 0.888 34 H 0.108 0.892 35 H 0.209 0.791 36 H 0.072 0.928 37 H 0.113 0.887 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.109 0.891 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.112 0.888 44 H 0.077 0.923 45 H 0.101 0.899 46 H 0.145 0.855 47 H 0.058 0.942 48 H 0.083 0.917 49 H 0.203 0.797 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 19.695 -4.123 -19.592 28.084 hybrid contribution -0.743 0.553 0.835 1.247 sum 18.952 -3.570 -18.756 26.902 Atomic orbital electron populations 1.21566 0.93273 1.02257 1.01503 1.21612 0.97142 0.98995 0.94236 0.92847 1.21773 0.77526 1.02006 0.98311 1.48104 1.07524 1.58472 1.18096 1.17244 0.84094 0.77535 0.83226 1.90735 1.74215 1.49407 1.29017 1.23456 0.96166 1.04930 0.94910 1.22505 0.89140 1.06077 1.03163 1.25101 0.99231 0.96303 0.85966 1.19455 0.84600 0.97795 0.96630 1.21993 1.04276 0.91179 1.02563 1.21949 0.98414 1.01842 0.98445 1.21974 1.04061 1.00526 0.93219 1.84777 1.18922 1.55637 1.35891 1.73853 0.90118 1.19493 1.21145 1.22746 1.01501 0.97053 0.82475 1.22499 0.98753 0.99414 0.96987 1.20421 0.91191 0.95488 0.85780 0.93244 1.42554 1.76804 1.10888 1.06651 1.19547 1.34078 0.94399 0.88549 0.90621 1.25506 1.03017 0.96946 1.01307 1.69815 1.51849 1.11079 1.29392 0.85270 0.77881 0.77398 0.79577 1.20546 1.22475 1.20382 0.92114 0.93891 0.91284 0.88849 0.89238 0.79095 0.92778 0.88715 0.91775 0.91984 0.89126 0.92416 0.91757 0.88788 0.92322 0.89934 0.85542 0.94245 0.91736 0.79722 0.94186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.20 9.02 71.98 0.65 -3.55 16 2 C -0.10 -3.41 2.46 -10.72 -0.03 -3.44 16 3 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 4 C 0.13 3.72 5.70 86.36 0.49 4.21 16 5 N -0.59 -18.30 2.97 -820.92 -2.43 -20.74 16 6 C 0.59 18.94 7.72 86.93 0.67 19.61 16 7 O -0.56 -19.75 16.39 -3.68 -0.06 -19.81 16 8 C -0.04 -1.04 6.95 42.96 0.30 -0.74 16 9 C -0.19 -3.94 10.41 22.60 0.24 -3.70 16 10 C 0.00 -0.04 5.76 25.01 0.14 0.10 16 11 C 0.02 0.17 0.94 -52.93 -0.05 0.12 16 12 C -0.14 -1.20 8.36 71.98 0.60 -0.60 16 13 C -0.15 -1.29 8.07 71.98 0.58 -0.71 16 14 C -0.14 -1.01 8.36 71.98 0.60 -0.41 16 15 O 0.12 2.66 10.65 71.94 0.77 3.42 16 16 N -0.34 -9.18 8.51 -49.52 -0.42 -9.60 16 17 C 0.09 2.59 6.36 86.51 0.55 3.14 16 18 C -0.14 -5.00 5.67 30.82 0.17 -4.82 16 19 C 0.18 7.12 2.19 45.02 0.10 7.21 16 20 H 0.05 1.96 8.08 -2.39 -0.02 1.94 16 21 N -0.73 -36.62 4.41 -322.82 -1.42 -38.04 16 22 C -0.23 -12.85 9.93 84.03 0.83 -12.02 16 23 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 24 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 25 N -0.97 -59.75 13.06 21.65 0.28 -59.46 16 26 Si 0.97 46.30 29.55 68.60 2.03 48.33 16 27 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 28 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 29 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 30 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.04 1.69 7.36 -2.39 -0.02 1.67 16 32 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.09 2.75 7.04 -2.39 -0.02 2.74 16 34 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.19 3.38 8.06 -2.91 -0.02 3.35 16 36 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 37 H 0.09 0.39 8.14 -2.38 -0.02 0.37 16 38 H 0.06 0.56 8.03 -2.39 -0.02 0.54 16 39 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.09 0.40 8.14 -2.39 -0.02 0.39 16 41 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.06 0.48 8.02 -2.39 -0.02 0.46 16 43 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 44 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 45 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 46 H 0.13 3.79 3.75 -46.60 -0.17 3.62 16 47 H 0.04 1.57 8.14 -2.39 -0.02 1.56 16 48 H 0.06 2.51 8.14 -2.38 -0.02 2.49 16 49 H 0.37 20.34 7.50 -92.71 -0.70 19.64 16 50 H 0.25 14.99 8.31 -92.70 -0.77 14.22 16 Total: -1.00 -68.81 398.24 5.13 -63.68 By element: Atomic # 1 Polarization: 31.63 SS G_CDS: 0.07 Total: 31.70 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: 6.32 Total: 0.52 kcal Atomic # 7 Polarization: -123.85 SS G_CDS: -4.00 Total: -127.84 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: 0.71 Total: -16.39 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -68.81 5.13 -63.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036102395.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.057 kcal (2) G-P(sol) polarization free energy of solvation -68.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds