Wall clock time and date at job start Tue Mar 31 2020 18:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.52555 * 2 1 4 4 C 1.53625 * 109.43643 * 120.21507 * 2 1 3 5 5 N 1.46918 * 108.54638 * 174.71987 * 4 2 1 6 6 C 1.34785 * 120.62860 * 126.36492 * 5 4 2 7 7 O 1.21691 * 120.00066 * 6.16181 * 6 5 4 8 8 C 1.46651 * 119.99774 * 186.16019 * 6 5 4 9 9 O 1.34915 * 125.99316 * 7.78069 * 8 6 5 10 10 C 1.33926 * 109.38938 * 180.02562 * 9 8 6 11 11 C 1.35139 * 108.76656 * 359.97438 * 10 9 8 12 12 C 1.36546 * 125.98453 * 187.82653 * 8 6 5 13 13 C 1.50696 * 126.64881 * 359.69461 * 12 8 6 14 14 N 1.46898 * 109.47445 * 282.51470 * 13 12 8 15 15 C 1.46896 * 111.00420 * 163.98200 * 14 13 12 16 16 C 1.46909 * 110.99733 * 287.92952 * 14 13 12 17 17 C 1.46928 * 118.74082 * 306.09867 * 5 4 2 18 18 C 1.53187 * 108.77467 * 53.85636 * 17 5 4 19 19 C 1.53040 * 109.31362 * 305.36406 * 18 17 5 20 20 H 1.09001 * 109.46184 * 181.37791 * 19 18 17 21 21 N 1.46500 * 109.46316 * 301.34803 * 19 18 17 22 22 C 1.36934 * 120.00179 * 275.00389 * 21 19 18 23 23 H 1.08000 * 120.00136 * 359.97438 * 22 21 19 24 24 C 1.38817 * 120.00005 * 179.97438 * 22 21 19 25 25 N 1.31609 * 119.99929 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 119.99592 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47235 * 90.00339 * 26 24 22 28 28 H 1.48500 * 109.47047 * 209.99741 * 26 24 22 29 29 H 1.48498 * 109.47325 * 329.99694 * 26 24 22 30 30 H 1.09006 * 109.47043 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47073 * 300.07448 * 1 2 3 32 32 H 1.08996 * 109.47713 * 60.07370 * 1 2 3 33 33 H 1.09004 * 109.73548 * 54.98249 * 4 2 1 34 34 H 1.09002 * 109.66252 * 294.42167 * 4 2 1 35 35 H 1.08000 * 125.61823 * 179.97438 * 10 9 8 36 36 H 1.07994 * 126.44326 * 179.97438 * 11 10 9 37 37 H 1.09002 * 109.47060 * 42.50930 * 13 12 8 38 38 H 1.09003 * 109.47685 * 162.50888 * 13 12 8 39 39 H 1.09004 * 109.47340 * 59.99600 * 15 14 13 40 40 H 1.08999 * 109.47390 * 179.97438 * 15 14 13 41 41 H 1.09004 * 109.46855 * 299.99579 * 15 14 13 42 42 H 1.09009 * 109.46605 * 65.08653 * 16 14 13 43 43 H 1.08992 * 109.47084 * 185.08586 * 16 14 13 44 44 H 1.08996 * 109.47117 * 305.09047 * 16 14 13 45 45 H 1.09001 * 109.58511 * 173.64565 * 17 5 4 46 46 H 1.09000 * 109.58327 * 293.92264 * 17 5 4 47 47 H 1.08996 * 109.49817 * 65.32198 * 18 17 5 48 48 H 1.09003 * 109.49126 * 185.38707 * 18 17 5 49 49 H 0.97000 * 119.99724 * 94.99404 * 21 19 18 50 50 H 0.97008 * 120.00095 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0412 -0.7291 1.2519 5 7 3.5046 -0.8293 1.1694 6 6 4.2812 -0.3866 2.1781 7 8 3.7720 -0.0022 3.2144 8 6 5.7398 -0.3683 2.0269 9 8 6.4224 -0.6236 0.8915 10 6 7.7361 -0.5152 1.1286 11 6 7.9178 -0.1863 2.4267 12 6 6.6450 -0.0907 3.0107 13 6 6.3370 0.2582 4.4440 14 7 5.8986 1.6580 4.5239 15 6 5.2362 1.9298 5.8066 16 6 7.0255 2.5756 4.3087 17 6 4.1052 -1.4267 -0.0311 18 6 3.5707 -0.6949 -1.2662 19 6 2.0407 -0.7230 -1.2485 20 1 1.6580 -0.2241 -2.1389 21 7 1.5782 -2.1130 -1.2310 22 6 1.4467 -2.8056 -2.4050 23 1 1.6835 -2.3271 -3.3438 24 6 1.0089 -4.1228 -2.3884 25 7 0.7208 -4.7061 -1.2443 26 14 0.8289 -5.0673 -3.9899 27 1 2.1061 -5.7566 -4.3044 28 1 -0.2553 -6.0727 -3.8524 29 1 0.4927 -4.1236 -5.0861 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5150 0.8894 32 1 -0.3634 0.5127 -0.8906 33 1 1.6084 -1.7284 1.2983 34 1 1.7630 -0.1665 2.1431 35 1 8.5209 -0.6658 0.4021 36 1 8.8644 -0.0280 2.9219 37 1 5.5446 -0.3923 4.8141 38 1 7.2319 0.1224 5.0515 39 1 5.9311 1.7340 6.6232 40 1 4.9222 2.9731 5.8394 41 1 4.3640 1.2841 5.9090 42 1 7.3966 2.4624 3.2900 43 1 6.6926 3.6020 4.4622 44 1 7.8233 2.3430 5.0139 45 1 5.1895 -1.3246 0.0134 46 1 3.8396 -2.4824 -0.0858 47 1 3.9158 0.3389 -1.2542 48 1 3.9337 -1.1892 -2.1673 49 1 1.3652 -2.5427 -0.3879 50 1 0.4145 -5.6265 -1.2327 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036151858.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:52 Heat of formation + Delta-G solvation = -3.012254 kcal Electronic energy + Delta-G solvation = -30735.009969 eV Core-core repulsion = 26764.258708 eV Total energy + Delta-G solvation = -3970.751261 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.73901 -41.03549 -39.11548 -38.29665 -35.89028 -34.57695 -34.11300 -32.99583 -31.20306 -30.91252 -28.57638 -28.40250 -27.46020 -26.44651 -25.32794 -23.67968 -23.12063 -22.92238 -22.18870 -20.47740 -19.83476 -19.27144 -18.35984 -17.56958 -17.34983 -16.88089 -16.56418 -16.16222 -16.09332 -15.99980 -15.81486 -15.64279 -15.35199 -14.97103 -14.81838 -14.34132 -14.20527 -14.09642 -13.95997 -13.52631 -13.35144 -13.16361 -12.98838 -12.86121 -12.81527 -12.68850 -12.60780 -12.53595 -12.41603 -12.33925 -12.10076 -11.95890 -11.75901 -11.56564 -11.18229 -11.05920 -10.82505 -10.74907 -9.76032 -9.40728 -9.18775 -8.91345 -7.87420 -5.13764 0.10222 1.44880 1.50145 1.50438 1.58594 1.66491 2.10397 2.25556 2.60696 3.20605 3.46164 3.52404 3.71396 3.87311 3.90185 3.94989 4.09453 4.11303 4.27415 4.34360 4.36203 4.40669 4.49896 4.52088 4.55558 4.58268 4.65228 4.73303 4.73921 4.76900 4.84844 4.90822 5.01341 5.04560 5.05936 5.06883 5.13215 5.14714 5.25456 5.27934 5.34900 5.45632 5.50322 5.60719 5.68065 5.96496 6.11445 6.20746 6.34161 6.42571 7.07549 7.41507 8.17686 8.41757 9.35987 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017599 B = 0.003196 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.598314 B = 8759.313122 C = 9569.191591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.098 4.098 3 H 0.085 0.915 4 C 0.128 3.872 5 N -0.598 5.598 6 C 0.591 3.409 7 O -0.537 6.537 8 C -0.087 4.087 9 O -0.167 6.167 10 C -0.002 4.002 11 C -0.224 4.224 12 C -0.088 4.088 13 C 0.127 3.873 14 N -0.553 5.553 15 C 0.035 3.965 16 C 0.029 3.971 17 C 0.109 3.891 18 C -0.137 4.137 19 C 0.173 3.827 20 H 0.049 0.951 21 N -0.725 5.725 22 C -0.226 4.226 23 H 0.076 0.924 24 C -0.074 4.074 25 N -0.970 5.970 26 Si 0.965 3.035 27 H -0.290 1.290 28 H -0.302 1.302 29 H -0.271 1.271 30 H 0.040 0.960 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.050 0.950 34 H 0.087 0.913 35 H 0.250 0.750 36 H 0.180 0.820 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.035 0.965 40 H 0.074 0.926 41 H 0.055 0.945 42 H 0.061 0.939 43 H 0.071 0.929 44 H 0.037 0.963 45 H 0.114 0.886 46 H 0.047 0.953 47 H 0.070 0.930 48 H 0.066 0.934 49 H 0.373 0.627 50 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.621 14.394 9.218 23.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.117 4.117 3 H 0.103 0.897 4 C 0.006 3.994 5 N -0.329 5.329 6 C 0.380 3.620 7 O -0.417 6.417 8 C -0.139 4.139 9 O -0.063 6.063 10 C -0.071 4.071 11 C -0.243 4.243 12 C -0.092 4.092 13 C 0.000 4.000 14 N -0.278 5.278 15 C -0.113 4.113 16 C -0.119 4.119 17 C -0.012 4.012 18 C -0.177 4.177 19 C 0.064 3.936 20 H 0.067 0.933 21 N -0.366 5.366 22 C -0.358 4.358 23 H 0.093 0.907 24 C -0.266 4.266 25 N -0.621 5.621 26 Si 0.795 3.205 27 H -0.218 1.218 28 H -0.229 1.229 29 H -0.196 1.196 30 H 0.059 0.941 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.106 0.894 35 H 0.265 0.735 36 H 0.198 0.802 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.053 0.947 40 H 0.093 0.907 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.090 0.910 44 H 0.055 0.945 45 H 0.131 0.869 46 H 0.066 0.934 47 H 0.089 0.911 48 H 0.085 0.915 49 H 0.206 0.794 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 15.812 14.582 8.931 23.290 hybrid contribution 0.133 -1.421 0.070 1.429 sum 15.946 13.162 9.001 22.550 Atomic orbital electron populations 1.21593 0.93794 1.01539 1.01885 1.21705 0.96730 0.99178 0.94135 0.89687 1.21616 0.78493 1.00239 0.99090 1.48047 1.07001 1.59482 1.18405 1.16980 0.83852 0.77775 0.83359 1.90805 1.73131 1.49891 1.27888 1.21688 0.92109 1.13870 0.86199 1.84211 1.19477 1.68626 1.33996 1.25384 0.83194 0.99598 0.98874 1.21966 0.98232 1.09143 0.94912 1.20630 0.92594 0.99642 0.96297 1.20393 0.99336 0.90052 0.90244 1.61740 1.28787 1.02853 1.34396 1.22287 0.98334 1.02226 0.88446 1.22407 0.91718 0.96546 1.01251 1.22072 0.99106 0.96475 0.83564 1.22348 0.98470 0.99851 0.97060 1.20444 0.92064 0.85240 0.95867 0.93282 1.42592 1.79059 1.09277 1.05628 1.19579 1.34684 0.93903 0.87657 0.90653 1.25404 1.03625 0.98418 0.99194 1.69810 1.53929 1.12813 1.25549 0.85259 0.76618 0.78410 0.80190 1.21797 1.22934 1.19588 0.94127 0.91541 0.92100 0.93134 0.89420 0.73459 0.80234 0.91333 0.92079 0.94658 0.90726 0.92654 0.92031 0.90972 0.94473 0.86887 0.93427 0.91098 0.91518 0.79353 0.94407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.22 9.05 71.98 0.65 -3.57 16 2 C -0.10 -3.25 2.69 -10.57 -0.03 -3.28 16 3 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 4 C 0.13 4.59 5.43 86.51 0.47 5.06 16 5 N -0.60 -21.07 2.97 -822.81 -2.44 -23.51 16 6 C 0.59 20.72 7.65 86.44 0.66 21.38 16 7 O -0.54 -20.59 14.45 -4.32 -0.06 -20.65 16 8 C -0.09 -2.56 6.82 24.07 0.16 -2.40 16 9 O -0.17 -4.19 7.16 -5.01 -0.04 -4.22 16 10 C 0.00 -0.04 12.08 67.11 0.81 0.77 16 11 C -0.22 -3.85 10.62 22.07 0.23 -3.62 16 12 C -0.09 -2.17 4.98 -19.74 -0.10 -2.27 16 13 C 0.13 3.02 4.52 85.56 0.39 3.40 16 14 N -0.55 -13.05 4.76 -953.46 -4.54 -17.59 16 15 C 0.03 0.71 9.53 127.69 1.22 1.93 16 16 C 0.03 0.51 9.40 127.69 1.20 1.71 16 17 C 0.11 3.81 6.06 86.36 0.52 4.33 16 18 C -0.14 -4.63 5.78 30.67 0.18 -4.45 16 19 C 0.17 6.54 2.53 45.02 0.11 6.65 16 20 H 0.05 1.88 8.08 -2.39 -0.02 1.87 16 21 N -0.72 -34.52 3.64 -322.80 -1.18 -35.69 16 22 C -0.23 -11.99 9.93 84.03 0.83 -11.16 16 23 H 0.08 3.84 7.83 -2.91 -0.02 3.82 16 24 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 25 N -0.97 -58.58 13.06 21.65 0.28 -58.29 16 26 Si 0.96 45.65 29.55 68.60 2.03 47.67 16 27 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 28 H -0.30 -14.65 7.11 99.48 0.71 -13.95 16 29 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 30 H 0.04 1.56 7.54 -2.38 -0.02 1.54 16 31 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 32 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.05 2.07 6.63 -2.39 -0.02 2.05 16 34 H 0.09 3.08 7.04 -2.39 -0.02 3.06 16 35 H 0.25 1.59 8.06 -2.91 -0.02 1.57 16 36 H 0.18 1.94 8.06 -2.91 -0.02 1.91 16 37 H 0.07 1.93 7.15 -2.39 -0.02 1.92 16 38 H 0.06 1.15 7.96 -2.39 -0.02 1.13 16 39 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.07 1.35 8.06 -2.39 -0.02 1.33 16 41 H 0.05 1.32 8.09 -2.38 -0.02 1.30 16 42 H 0.06 1.14 7.46 -2.38 -0.02 1.13 16 43 H 0.07 1.15 8.03 -2.39 -0.02 1.13 16 44 H 0.04 0.54 8.01 -2.39 -0.02 0.52 16 45 H 0.11 3.52 3.82 -49.25 -0.19 3.34 16 46 H 0.05 1.99 7.74 -2.39 -0.02 1.97 16 47 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 48 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 49 H 0.37 19.48 5.92 -92.71 -0.55 18.93 16 50 H 0.25 14.67 8.31 -92.70 -0.77 13.90 16 Total: -1.00 -68.17 392.11 2.05 -66.12 By element: Atomic # 1 Polarization: 35.18 SS G_CDS: 0.21 Total: 35.38 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: 7.78 Total: 10.78 kcal Atomic # 7 Polarization: -127.22 SS G_CDS: -7.87 Total: -135.09 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -0.10 Total: -24.87 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.67 kcal Total: -68.17 2.05 -66.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036151858.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.108 kcal (2) G-P(sol) polarization free energy of solvation -68.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds