Wall clock time and date at job start Tue Mar 31 2020 18:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.49913 * 2 1 4 4 C 1.53191 * 109.49480 * 239.93811 * 2 1 3 5 5 N 1.46930 * 108.77233 * 185.38142 * 4 2 1 6 6 C 1.34775 * 120.63014 * 233.58403 * 5 4 2 7 7 O 1.21696 * 120.00240 * 186.37976 * 6 5 4 8 8 C 1.46662 * 119.99936 * 6.37537 * 6 5 4 9 9 O 1.34909 * 125.98381 * 7.37877 * 8 6 5 10 10 C 1.33934 * 109.37950 * 179.97438 * 9 8 6 11 11 C 1.35133 * 108.77167 * 0.26555 * 10 9 8 12 12 C 1.36542 * 125.98454 * 187.32712 * 8 6 5 13 13 C 1.50696 * 126.64885 * 0.04318 * 12 8 6 14 14 N 1.46902 * 109.47199 * 80.00003 * 13 12 8 15 15 C 1.46896 * 111.00094 * 66.04413 * 14 13 12 16 16 C 1.46897 * 110.99872 * 190.00173 * 14 13 12 17 17 C 1.46919 * 118.74024 * 53.86345 * 5 4 2 18 18 C 1.53627 * 108.54193 * 306.09084 * 17 5 4 19 19 C 1.53038 * 109.52374 * 120.08423 * 2 1 3 20 20 H 1.09005 * 109.46186 * 301.35086 * 19 2 1 21 21 N 1.46496 * 109.46087 * 61.31054 * 19 2 1 22 22 C 1.36937 * 120.00161 * 204.99979 * 21 19 2 23 23 H 1.07999 * 120.00100 * 359.97438 * 22 21 19 24 24 C 1.38814 * 120.00355 * 180.02562 * 22 21 19 25 25 N 1.31626 * 119.99819 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00149 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47204 * 89.99676 * 26 24 22 28 28 H 1.48501 * 109.47150 * 209.99188 * 26 24 22 29 29 H 1.48496 * 109.47124 * 329.99887 * 26 24 22 30 30 H 1.08995 * 109.47653 * 180.02562 * 1 2 3 31 31 H 1.09010 * 109.47326 * 300.06325 * 1 2 3 32 32 H 1.09002 * 109.47494 * 60.05925 * 1 2 3 33 33 H 1.08993 * 109.58691 * 65.59929 * 4 2 1 34 34 H 1.08998 * 109.58814 * 305.16685 * 4 2 1 35 35 H 1.08000 * 125.61604 * 179.97438 * 10 9 8 36 36 H 1.07988 * 126.44580 * 179.73653 * 11 10 9 37 37 H 1.08999 * 109.47193 * 199.99441 * 13 12 8 38 38 H 1.08996 * 109.47351 * 319.99654 * 13 12 8 39 39 H 1.08999 * 109.47320 * 59.99760 * 15 14 13 40 40 H 1.09003 * 109.47548 * 180.02562 * 15 14 13 41 41 H 1.08996 * 109.47128 * 300.00368 * 15 14 13 42 42 H 1.08994 * 109.47633 * 59.99714 * 16 14 13 43 43 H 1.09001 * 109.47218 * 179.97438 * 16 14 13 44 44 H 1.09001 * 109.47096 * 299.99380 * 16 14 13 45 45 H 1.09003 * 109.59223 * 65.92472 * 17 5 4 46 46 H 1.09005 * 109.59083 * 186.34995 * 17 5 4 47 47 H 1.08999 * 109.63296 * 294.86522 * 18 17 5 48 48 H 1.08997 * 109.43289 * 174.72603 * 18 17 5 49 49 H 0.96999 * 120.00157 * 25.00219 * 21 19 2 50 50 H 0.96997 * 120.00250 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0412 -0.7234 -1.2498 5 7 3.5046 -0.8281 -1.1702 6 6 4.2806 -0.3849 -2.1791 7 8 5.4814 -0.5811 -2.1546 8 6 3.6779 0.3338 -3.3066 9 8 2.3940 0.7389 -3.3931 10 6 2.2027 1.3626 -4.5629 11 6 3.3655 1.3621 -5.2512 12 6 4.3183 0.7109 -4.4520 13 6 5.7656 0.4689 -4.7949 14 7 5.9313 -0.9097 -5.2746 15 6 5.2315 -1.1109 -6.5504 16 6 7.3533 -1.2584 -5.3933 17 6 4.1056 -1.4307 0.0273 18 6 3.5715 -0.6943 1.2653 19 6 2.0414 -0.7230 1.2481 20 1 1.6588 -0.2247 2.1389 21 7 1.5795 -2.1132 1.2305 22 6 1.4500 -2.8066 2.4042 23 1 1.6887 -2.3287 3.3429 24 6 1.0129 -4.1240 2.3875 25 7 0.7224 -4.7065 1.2435 26 14 0.8368 -5.0700 3.9886 27 1 -0.5347 -4.8824 4.5262 28 1 1.0775 -6.5140 3.7393 29 1 1.8276 -4.5656 4.9730 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5149 0.8895 32 1 -0.3634 0.5129 -0.8905 33 1 1.7632 -0.1575 -2.1389 34 1 1.6056 -1.7214 -1.2983 35 1 1.2711 1.7907 -4.9023 36 1 3.5314 1.7857 -6.2306 37 1 6.0755 1.1645 -5.5747 38 1 6.3796 0.6210 -3.9073 39 1 5.6367 -0.4294 -7.2985 40 1 5.3701 -2.1397 -6.8826 41 1 4.1681 -0.9127 -6.4167 42 1 7.8324 -1.1676 -4.4186 43 1 7.4473 -2.2842 -5.7498 44 1 7.8354 -0.5824 -6.0995 45 1 3.8350 -2.4852 0.0810 46 1 5.1902 -1.3316 -0.0188 47 1 3.9161 0.3397 1.2534 48 1 3.9345 -1.1889 2.1662 49 1 1.3655 -2.5425 0.3874 50 1 0.4166 -5.6270 1.2318 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036151860.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:59 Heat of formation + Delta-G solvation = 15.804776 kcal Electronic energy + Delta-G solvation = -30789.869894 eV Core-core repulsion = 26819.934601 eV Total energy + Delta-G solvation = -3969.935293 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.82644 -39.66621 -37.87561 -37.30114 -34.27521 -33.28461 -32.59485 -31.73222 -30.20804 -29.11991 -27.61452 -27.33841 -26.18830 -24.98113 -23.64875 -22.68283 -22.08388 -21.87775 -20.68054 -19.43517 -18.49456 -17.35361 -17.22156 -16.52557 -16.29497 -15.58364 -15.26738 -15.23557 -14.86839 -14.73836 -14.36562 -14.29722 -13.90610 -13.72545 -13.23707 -13.19140 -13.10771 -12.78299 -12.59982 -12.48281 -12.26549 -12.08210 -11.82615 -11.72099 -11.56312 -11.41186 -11.30972 -11.09451 -10.87774 -10.70705 -10.48589 -10.28280 -10.17382 -9.95610 -9.88321 -9.69062 -9.46905 -8.89908 -8.69899 -8.36066 -8.12608 -6.94263 -5.76164 -3.04316 1.11246 2.25328 2.67718 3.32805 3.43535 3.44045 3.49881 3.51102 4.05759 4.56422 4.60269 4.61996 4.76756 5.08056 5.17316 5.18415 5.26364 5.31942 5.34305 5.44143 5.47051 5.49845 5.58612 5.65188 5.67465 5.72605 5.80649 5.84153 5.87553 5.92114 5.93186 5.96320 6.11146 6.24690 6.25093 6.28278 6.43312 6.47216 6.55083 6.63142 6.76237 6.79704 6.89344 6.96951 6.98509 7.01607 7.05610 7.71517 7.72827 8.36514 8.42393 9.53987 10.10765 10.45847 11.46318 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015984 B = 0.003246 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.370098 B = 8623.859565 C = 9343.946927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.106 4.106 3 H 0.065 0.935 4 C 0.099 3.901 5 N -0.592 5.592 6 C 0.597 3.403 7 O -0.519 6.519 8 C -0.044 4.044 9 O -0.152 6.152 10 C -0.022 4.022 11 C -0.220 4.220 12 C -0.096 4.096 13 C 0.122 3.878 14 N -0.533 5.533 15 C 0.024 3.976 16 C 0.030 3.970 17 C 0.123 3.877 18 C -0.149 4.149 19 C 0.178 3.822 20 H 0.050 0.950 21 N -0.718 5.718 22 C -0.236 4.236 23 H 0.069 0.931 24 C -0.012 4.012 25 N -0.932 5.932 26 Si 0.904 3.096 27 H -0.291 1.291 28 H -0.293 1.293 29 H -0.283 1.283 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.043 0.957 33 H 0.101 0.899 34 H 0.078 0.922 35 H 0.205 0.795 36 H 0.150 0.850 37 H 0.039 0.961 38 H 0.099 0.901 39 H 0.021 0.979 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.067 0.933 44 H 0.020 0.980 45 H 0.084 0.916 46 H 0.079 0.921 47 H 0.048 0.952 48 H 0.074 0.926 49 H 0.383 0.617 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.630 13.957 -15.184 21.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.126 4.126 3 H 0.084 0.916 4 C -0.023 4.023 5 N -0.323 5.323 6 C 0.384 3.616 7 O -0.397 6.397 8 C -0.097 4.097 9 O -0.048 6.048 10 C -0.091 4.091 11 C -0.239 4.239 12 C -0.100 4.100 13 C -0.005 4.005 14 N -0.257 5.257 15 C -0.124 4.124 16 C -0.118 4.118 17 C 0.001 3.999 18 C -0.190 4.190 19 C 0.068 3.932 20 H 0.068 0.932 21 N -0.361 5.361 22 C -0.368 4.368 23 H 0.087 0.913 24 C -0.208 4.208 25 N -0.581 5.581 26 Si 0.736 3.264 27 H -0.219 1.219 28 H -0.219 1.219 29 H -0.208 1.208 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.118 0.882 34 H 0.096 0.904 35 H 0.222 0.778 36 H 0.167 0.833 37 H 0.057 0.943 38 H 0.117 0.883 39 H 0.039 0.961 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.086 0.914 44 H 0.039 0.961 45 H 0.102 0.898 46 H 0.098 0.902 47 H 0.066 0.934 48 H 0.093 0.907 49 H 0.219 0.781 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.851 13.377 -14.382 20.495 hybrid contribution -0.007 -0.137 -0.250 0.285 sum 5.844 13.241 -14.632 20.580 Atomic orbital electron populations 1.21664 0.94219 1.03198 1.00369 1.21683 0.96453 0.98800 0.95695 0.91625 1.22322 0.78679 1.02024 0.99275 1.48025 1.07308 1.58924 1.18041 1.16641 0.85915 0.78806 0.80221 1.90810 1.13423 1.58203 1.77282 1.22113 0.82056 1.06465 0.99032 1.84320 1.27812 1.57198 1.35422 1.24432 1.00536 0.99098 0.85060 1.21641 0.93009 1.07132 1.02132 1.20298 0.96963 0.99764 0.92945 1.20517 0.91141 0.88378 1.00462 1.61833 1.12400 1.23255 1.28205 1.22416 0.99642 1.00910 0.89448 1.22338 0.87556 1.00388 1.01542 1.21702 0.97646 0.98220 0.82291 1.22609 1.00154 0.98664 0.97572 1.20230 0.90935 0.87336 0.94727 0.93157 1.42467 1.78975 1.07714 1.06933 1.19218 1.37092 0.93888 0.86576 0.91269 1.24697 1.02352 0.97143 0.96577 1.69649 1.51758 1.13033 1.23631 0.86236 0.77685 0.79407 0.83117 1.21885 1.21901 1.20849 0.91026 0.92797 0.93834 0.88235 0.90391 0.77803 0.83273 0.94328 0.88319 0.96064 0.91579 0.91332 0.90835 0.91443 0.96121 0.89812 0.90250 0.93378 0.90728 0.78131 0.93566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.06 37.15 0.34 -1.77 16 2 C -0.11 -1.71 2.67 -90.50 -0.24 -1.95 16 3 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 4 C 0.10 1.62 5.31 -3.71 -0.02 1.60 16 5 N -0.59 -10.30 2.97 -174.05 -0.52 -10.81 16 6 C 0.60 10.38 7.65 -12.86 -0.10 10.29 16 7 O -0.52 -9.90 14.40 5.19 0.07 -9.82 16 8 C -0.04 -0.65 6.83 -36.80 -0.25 -0.91 16 9 O -0.15 -1.96 7.15 5.00 0.04 -1.92 16 10 C -0.02 -0.21 12.08 29.63 0.36 0.14 16 11 C -0.22 -2.20 10.21 -39.88 -0.41 -2.61 16 12 C -0.10 -1.25 4.76 -104.43 -0.50 -1.75 16 13 C 0.12 1.53 4.70 -4.98 -0.02 1.50 16 14 N -0.53 -6.82 5.01 -252.73 -1.27 -8.09 16 15 C 0.02 0.26 9.37 60.06 0.56 0.82 16 16 C 0.03 0.32 9.57 60.06 0.57 0.90 16 17 C 0.12 2.26 6.18 -3.49 -0.02 2.24 16 18 C -0.15 -2.66 5.80 -26.38 -0.15 -2.81 16 19 C 0.18 3.38 2.53 -67.89 -0.17 3.21 16 20 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 21 N -0.72 -16.74 3.64 -53.39 -0.19 -16.93 16 22 C -0.24 -6.25 9.93 -15.06 -0.15 -6.40 16 23 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 24 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 25 N -0.93 -27.31 13.06 55.49 0.72 -26.58 16 26 Si 0.90 22.04 29.55 -169.99 -5.02 17.01 16 27 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 28 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 29 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 30 H 0.07 1.30 7.54 -51.93 -0.39 0.91 16 31 H 0.05 0.81 8.14 -51.92 -0.42 0.39 16 32 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.10 1.48 3.81 -54.96 -0.21 1.27 16 34 H 0.08 1.45 6.64 -51.93 -0.34 1.10 16 35 H 0.21 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.04 0.41 8.12 -51.93 -0.42 -0.01 16 38 H 0.10 1.38 6.80 -51.93 -0.35 1.03 16 39 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 40 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 41 H 0.07 0.76 6.79 -51.93 -0.35 0.41 16 42 H 0.07 0.85 8.12 -51.93 -0.42 0.43 16 43 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16 44 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 45 H 0.08 1.77 7.74 -51.93 -0.40 1.37 16 46 H 0.08 1.44 7.04 -51.93 -0.37 1.08 16 47 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 49 H 0.38 9.55 5.93 -40.82 -0.24 9.31 16 50 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 391.29 15.07 5.90 5.90 Total: -1.00 -30.79 391.29 -8.68 -39.48 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -8.12 Total: 9.69 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -0.30 Total: 2.08 kcal Atomic # 7 Polarization: -61.16 SS G_CDS: -1.25 Total: -62.41 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.11 Total: -11.74 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.79 -8.68 -39.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036151860.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.282 kcal (2) G-P(sol) polarization free energy of solvation -30.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds