Wall clock time and date at job start Tue Mar 31 2020 18:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.49913 * 2 1 4 4 C 1.53191 * 109.49480 * 239.93811 * 2 1 3 5 5 N 1.46930 * 108.77233 * 185.38142 * 4 2 1 6 6 C 1.34775 * 120.63014 * 233.58403 * 5 4 2 7 7 O 1.21696 * 120.00240 * 186.37976 * 6 5 4 8 8 C 1.46662 * 119.99936 * 6.37537 * 6 5 4 9 9 O 1.34909 * 125.98381 * 7.37877 * 8 6 5 10 10 C 1.33934 * 109.37950 * 179.97438 * 9 8 6 11 11 C 1.35133 * 108.77167 * 0.26555 * 10 9 8 12 12 C 1.36542 * 125.98454 * 187.32712 * 8 6 5 13 13 C 1.50696 * 126.64885 * 0.04318 * 12 8 6 14 14 N 1.46902 * 109.47199 * 80.00003 * 13 12 8 15 15 C 1.46896 * 111.00094 * 66.04413 * 14 13 12 16 16 C 1.46897 * 110.99872 * 190.00173 * 14 13 12 17 17 C 1.46919 * 118.74024 * 53.86345 * 5 4 2 18 18 C 1.53627 * 108.54193 * 306.09084 * 17 5 4 19 19 C 1.53038 * 109.52374 * 120.08423 * 2 1 3 20 20 H 1.09005 * 109.46186 * 301.35086 * 19 2 1 21 21 N 1.46496 * 109.46087 * 61.31054 * 19 2 1 22 22 C 1.36937 * 120.00161 * 204.99979 * 21 19 2 23 23 H 1.07999 * 120.00100 * 359.97438 * 22 21 19 24 24 C 1.38814 * 120.00355 * 180.02562 * 22 21 19 25 25 N 1.31626 * 119.99819 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00149 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47204 * 89.99676 * 26 24 22 28 28 H 1.48501 * 109.47150 * 209.99188 * 26 24 22 29 29 H 1.48496 * 109.47124 * 329.99887 * 26 24 22 30 30 H 1.08995 * 109.47653 * 180.02562 * 1 2 3 31 31 H 1.09010 * 109.47326 * 300.06325 * 1 2 3 32 32 H 1.09002 * 109.47494 * 60.05925 * 1 2 3 33 33 H 1.08993 * 109.58691 * 65.59929 * 4 2 1 34 34 H 1.08998 * 109.58814 * 305.16685 * 4 2 1 35 35 H 1.08000 * 125.61604 * 179.97438 * 10 9 8 36 36 H 1.07988 * 126.44580 * 179.73653 * 11 10 9 37 37 H 1.08999 * 109.47193 * 199.99441 * 13 12 8 38 38 H 1.08996 * 109.47351 * 319.99654 * 13 12 8 39 39 H 1.08999 * 109.47320 * 59.99760 * 15 14 13 40 40 H 1.09003 * 109.47548 * 180.02562 * 15 14 13 41 41 H 1.08996 * 109.47128 * 300.00368 * 15 14 13 42 42 H 1.08994 * 109.47633 * 59.99714 * 16 14 13 43 43 H 1.09001 * 109.47218 * 179.97438 * 16 14 13 44 44 H 1.09001 * 109.47096 * 299.99380 * 16 14 13 45 45 H 1.09003 * 109.59223 * 65.92472 * 17 5 4 46 46 H 1.09005 * 109.59083 * 186.34995 * 17 5 4 47 47 H 1.08999 * 109.63296 * 294.86522 * 18 17 5 48 48 H 1.08997 * 109.43289 * 174.72603 * 18 17 5 49 49 H 0.96999 * 120.00157 * 25.00219 * 21 19 2 50 50 H 0.96997 * 120.00250 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0412 -0.7234 -1.2498 5 7 3.5046 -0.8281 -1.1702 6 6 4.2806 -0.3849 -2.1791 7 8 5.4814 -0.5811 -2.1546 8 6 3.6779 0.3338 -3.3066 9 8 2.3940 0.7389 -3.3931 10 6 2.2027 1.3626 -4.5629 11 6 3.3655 1.3621 -5.2512 12 6 4.3183 0.7109 -4.4520 13 6 5.7656 0.4689 -4.7949 14 7 5.9313 -0.9097 -5.2746 15 6 5.2315 -1.1109 -6.5504 16 6 7.3533 -1.2584 -5.3933 17 6 4.1056 -1.4307 0.0273 18 6 3.5715 -0.6943 1.2653 19 6 2.0414 -0.7230 1.2481 20 1 1.6588 -0.2247 2.1389 21 7 1.5795 -2.1132 1.2305 22 6 1.4500 -2.8066 2.4042 23 1 1.6887 -2.3287 3.3429 24 6 1.0129 -4.1240 2.3875 25 7 0.7224 -4.7065 1.2435 26 14 0.8368 -5.0700 3.9886 27 1 -0.5347 -4.8824 4.5262 28 1 1.0775 -6.5140 3.7393 29 1 1.8276 -4.5656 4.9730 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5149 0.8895 32 1 -0.3634 0.5129 -0.8905 33 1 1.7632 -0.1575 -2.1389 34 1 1.6056 -1.7214 -1.2983 35 1 1.2711 1.7907 -4.9023 36 1 3.5314 1.7857 -6.2306 37 1 6.0755 1.1645 -5.5747 38 1 6.3796 0.6210 -3.9073 39 1 5.6367 -0.4294 -7.2985 40 1 5.3701 -2.1397 -6.8826 41 1 4.1681 -0.9127 -6.4167 42 1 7.8324 -1.1676 -4.4186 43 1 7.4473 -2.2842 -5.7498 44 1 7.8354 -0.5824 -6.0995 45 1 3.8350 -2.4852 0.0810 46 1 5.1902 -1.3316 -0.0188 47 1 3.9161 0.3397 1.2534 48 1 3.9345 -1.1889 2.1662 49 1 1.3655 -2.5425 0.3874 50 1 0.4166 -5.6270 1.2318 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036151860.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:58 Heat of formation + Delta-G solvation = -4.206917 kcal Electronic energy + Delta-G solvation = -30790.737666 eV Core-core repulsion = 26819.934601 eV Total energy + Delta-G solvation = -3970.803065 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.75375 -41.03955 -39.17960 -38.34270 -35.88884 -34.36646 -34.11811 -33.25792 -31.49078 -30.62796 -28.44734 -28.35917 -27.55911 -26.44614 -25.44076 -23.87711 -23.11037 -22.94362 -21.85084 -20.58722 -19.86807 -19.28383 -18.44353 -17.60491 -17.35060 -16.84906 -16.58974 -16.16587 -16.14235 -15.97641 -15.84445 -15.65165 -15.41055 -15.04137 -14.70841 -14.36820 -14.28454 -14.08997 -13.91690 -13.53624 -13.40559 -13.16933 -12.97925 -12.85032 -12.73534 -12.69183 -12.64806 -12.58617 -12.44938 -12.33884 -12.11529 -11.94039 -11.82275 -11.56392 -11.24998 -10.99972 -10.85936 -10.72647 -9.77943 -9.42461 -9.22675 -8.91668 -7.88242 -5.14326 0.08683 1.44761 1.49279 1.49895 1.57791 1.65374 2.09146 2.22452 2.60106 3.19066 3.45182 3.51711 3.70579 3.84121 3.91291 3.93771 4.11024 4.15148 4.25701 4.31015 4.36602 4.42067 4.45941 4.51126 4.53900 4.54344 4.65862 4.70635 4.73863 4.75880 4.85838 4.97413 4.99632 5.01322 5.05867 5.08936 5.13658 5.16933 5.20295 5.27911 5.32351 5.43864 5.54845 5.61994 5.66713 5.95651 6.08921 6.16016 6.33743 6.42031 7.04943 7.41125 8.17462 8.41184 9.35037 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015984 B = 0.003246 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.370098 B = 8623.859565 C = 9343.946927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.097 4.097 3 H 0.089 0.911 4 C 0.106 3.894 5 N -0.597 5.597 6 C 0.593 3.407 7 O -0.547 6.547 8 C -0.087 4.087 9 O -0.164 6.164 10 C 0.003 3.997 11 C -0.225 4.225 12 C -0.088 4.088 13 C 0.123 3.877 14 N -0.562 5.562 15 C 0.028 3.972 16 C 0.033 3.967 17 C 0.131 3.869 18 C -0.139 4.139 19 C 0.172 3.828 20 H 0.050 0.950 21 N -0.724 5.724 22 C -0.228 4.228 23 H 0.074 0.926 24 C -0.073 4.073 25 N -0.968 5.968 26 Si 0.964 3.036 27 H -0.290 1.290 28 H -0.302 1.302 29 H -0.272 1.272 30 H 0.037 0.963 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.123 0.877 34 H 0.048 0.952 35 H 0.253 0.747 36 H 0.180 0.820 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.040 0.960 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.056 0.944 43 H 0.072 0.928 44 H 0.039 0.961 45 H 0.047 0.953 46 H 0.078 0.922 47 H 0.071 0.929 48 H 0.062 0.938 49 H 0.374 0.626 50 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.989 16.723 -16.895 24.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.116 4.116 3 H 0.107 0.893 4 C -0.016 4.016 5 N -0.328 5.328 6 C 0.383 3.617 7 O -0.428 6.428 8 C -0.139 4.139 9 O -0.060 6.060 10 C -0.066 4.066 11 C -0.243 4.243 12 C -0.091 4.091 13 C -0.004 4.004 14 N -0.287 5.287 15 C -0.120 4.120 16 C -0.115 4.115 17 C 0.009 3.991 18 C -0.179 4.179 19 C 0.063 3.937 20 H 0.068 0.932 21 N -0.365 5.365 22 C -0.360 4.360 23 H 0.092 0.908 24 C -0.265 4.265 25 N -0.619 5.619 26 Si 0.794 3.206 27 H -0.217 1.217 28 H -0.229 1.229 29 H -0.197 1.197 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.140 0.860 34 H 0.066 0.934 35 H 0.269 0.731 36 H 0.198 0.802 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.058 0.942 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.091 0.909 44 H 0.058 0.942 45 H 0.066 0.934 46 H 0.096 0.904 47 H 0.090 0.910 48 H 0.080 0.920 49 H 0.207 0.793 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 5.221 16.192 -16.080 23.410 hybrid contribution 0.223 -0.877 0.154 0.918 sum 5.444 15.315 -15.925 22.756 Atomic orbital electron populations 1.21591 0.93430 1.01525 1.02178 1.21619 0.96983 0.99261 0.93783 0.89319 1.22292 0.77931 1.00786 1.00575 1.48036 1.07719 1.59157 1.17851 1.17001 0.85707 0.78435 0.80555 1.90781 1.14576 1.59390 1.78039 1.21588 0.83425 1.09613 0.99263 1.84175 1.26815 1.57877 1.37174 1.25418 1.02019 0.96136 0.82978 1.21970 0.92213 1.06991 1.03176 1.20611 0.97428 0.98458 0.92621 1.20469 0.90804 0.88949 1.00173 1.61793 1.13532 1.23578 1.29774 1.22394 0.99106 1.01591 0.88916 1.22301 0.86873 1.01187 1.01153 1.21421 0.97661 0.96446 0.83595 1.22474 0.99151 0.99711 0.96595 1.20458 0.91460 0.85346 0.96412 0.93198 1.42579 1.78980 1.09330 1.05616 1.19574 1.34773 0.93998 0.87694 0.90809 1.25390 1.03597 0.98338 0.99182 1.69804 1.53836 1.12836 1.25470 0.85272 0.77680 0.77511 0.80096 1.21695 1.22879 1.19742 0.94348 0.92295 0.90713 0.85970 0.93380 0.73133 0.80247 0.92089 0.90694 0.94157 0.91355 0.91878 0.92476 0.90918 0.94217 0.93428 0.90392 0.91019 0.91953 0.79280 0.94388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.80 9.06 71.98 0.65 -3.15 16 2 C -0.10 -3.00 2.67 -10.72 -0.03 -3.03 16 3 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 4 C 0.11 3.46 5.31 86.36 0.46 3.92 16 5 N -0.60 -21.19 2.97 -822.79 -2.44 -23.63 16 6 C 0.59 20.97 7.65 86.44 0.66 21.63 16 7 O -0.55 -21.67 14.40 -4.33 -0.06 -21.74 16 8 C -0.09 -2.49 6.83 24.07 0.16 -2.33 16 9 O -0.16 -3.78 7.15 -5.02 -0.04 -3.82 16 10 C 0.00 0.04 12.08 67.10 0.81 0.85 16 11 C -0.22 -3.60 10.21 22.07 0.23 -3.38 16 12 C -0.09 -2.11 4.76 -19.74 -0.09 -2.20 16 13 C 0.12 2.94 4.70 85.56 0.40 3.34 16 14 N -0.56 -13.94 5.01 -953.51 -4.78 -18.72 16 15 C 0.03 0.53 9.37 127.69 1.20 1.73 16 16 C 0.03 0.69 9.57 127.69 1.22 1.91 16 17 C 0.13 5.04 6.18 86.51 0.53 5.58 16 18 C -0.14 -4.97 5.80 30.82 0.18 -4.79 16 19 C 0.17 6.51 2.53 45.02 0.11 6.62 16 20 H 0.05 1.91 8.08 -2.38 -0.02 1.89 16 21 N -0.72 -34.64 3.64 -322.81 -1.17 -35.82 16 22 C -0.23 -12.26 9.93 84.03 0.83 -11.43 16 23 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 24 C -0.07 -4.12 5.50 84.86 0.47 -3.66 16 25 N -0.97 -58.71 13.06 21.65 0.28 -58.43 16 26 Si 0.96 46.20 29.55 68.60 2.03 48.23 16 27 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 28 H -0.30 -14.80 7.11 99.48 0.71 -14.09 16 29 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 30 H 0.04 1.39 7.54 -2.39 -0.02 1.37 16 31 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 32 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.12 3.47 3.81 -50.25 -0.19 3.28 16 34 H 0.05 1.86 6.64 -2.39 -0.02 1.85 16 35 H 0.25 1.04 8.06 -2.91 -0.02 1.02 16 36 H 0.18 1.75 8.06 -2.92 -0.02 1.73 16 37 H 0.06 1.14 8.12 -2.39 -0.02 1.12 16 38 H 0.07 2.14 6.80 -2.39 -0.02 2.12 16 39 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.07 1.26 8.12 -2.39 -0.02 1.24 16 41 H 0.06 1.26 6.79 -2.39 -0.02 1.25 16 42 H 0.06 1.36 8.12 -2.39 -0.02 1.34 16 43 H 0.07 1.41 8.12 -2.39 -0.02 1.39 16 44 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.05 2.15 7.74 -2.39 -0.02 2.14 16 46 H 0.08 2.98 7.04 -2.38 -0.02 2.96 16 47 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 48 H 0.06 2.36 8.14 -2.39 -0.02 2.35 16 49 H 0.37 19.45 5.93 -92.71 -0.55 18.90 16 50 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 Total: -1.00 -69.98 391.29 1.82 -68.15 By element: Atomic # 1 Polarization: 33.94 SS G_CDS: 0.21 Total: 34.15 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: 7.80 Total: 11.62 kcal Atomic # 7 Polarization: -128.49 SS G_CDS: -8.11 Total: -136.59 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: -0.10 Total: -25.55 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Total: -69.98 1.82 -68.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036151860.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.944 kcal (2) G-P(sol) polarization free energy of solvation -69.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds