Wall clock time and date at job start Tue Mar 31 2020 19:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.46906 * 2 1 4 4 C 1.50699 * 109.46935 * 240.00509 * 2 1 3 5 5 O 1.21290 * 119.99438 * 260.73027 * 4 2 1 6 6 N 1.34774 * 120.00338 * 80.72761 * 4 2 1 7 7 C 1.46941 * 120.44133 * 3.91433 * 6 4 2 8 8 C 1.54068 * 108.29244 * 125.71477 * 7 6 4 9 9 H 1.08997 * 110.52826 * 172.28168 * 8 7 6 10 10 C 1.53373 * 109.34115 * 294.25103 * 8 7 6 11 11 C 1.53006 * 109.25694 * 60.53821 * 10 8 7 12 12 C 1.52920 * 110.29649 * 59.71628 * 11 10 8 13 13 C 1.53372 * 109.75088 * 300.63115 * 12 11 10 14 14 H 1.09000 * 111.08205 * 176.90333 * 13 12 11 15 15 C 1.46952 * 120.44095 * 184.19017 * 6 4 2 16 16 N 1.47562 * 107.98549 * 55.44769 * 13 12 11 17 17 C 1.36937 * 121.61010 * 122.29968 * 16 13 12 18 18 H 1.07997 * 120.00414 * 26.25757 * 17 16 13 19 19 C 1.38815 * 119.99972 * 206.26354 * 17 16 13 20 20 N 1.31616 * 119.99827 * 31.29501 * 19 17 16 21 21 Si 1.86799 * 120.00236 * 211.29139 * 19 17 16 22 22 H 1.48499 * 109.46958 * 94.91632 * 21 19 17 23 23 H 1.48503 * 109.47241 * 214.91700 * 21 19 17 24 24 H 1.48498 * 109.46876 * 334.91727 * 21 19 17 25 25 C 1.52992 * 109.47579 * 120.00004 * 2 1 3 26 26 H 1.09003 * 110.21510 * 61.92637 * 25 2 1 27 27 C 1.54488 * 110.24776 * 300.00400 * 25 2 1 28 28 C 1.54624 * 101.76333 * 215.58312 * 27 25 2 29 29 C 1.51284 * 104.19841 * 24.79506 * 28 27 25 30 30 O 1.21278 * 124.94090 * 163.71624 * 29 28 27 31 31 N 1.34419 * 110.11468 * 343.74771 * 29 28 27 32 32 H 1.09003 * 109.46475 * 186.67589 * 1 2 3 33 33 H 1.08999 * 109.47172 * 66.67397 * 1 2 3 34 34 H 1.09004 * 109.46811 * 306.67010 * 1 2 3 35 35 H 1.09004 * 109.62591 * 245.47520 * 7 6 4 36 36 H 1.08993 * 109.62584 * 6.04092 * 7 6 4 37 37 H 1.09000 * 109.51003 * 180.47352 * 10 8 7 38 38 H 1.09005 * 109.50607 * 300.60639 * 10 8 7 39 39 H 1.09000 * 109.41774 * 180.67846 * 11 10 8 40 40 H 1.08997 * 109.42053 * 300.48219 * 11 10 8 41 41 H 1.08996 * 109.99688 * 180.08748 * 12 11 10 42 42 H 1.09000 * 108.52021 * 60.26133 * 12 11 10 43 43 H 1.08995 * 109.62933 * 353.96475 * 15 6 4 44 44 H 1.09000 * 109.62682 * 114.35094 * 15 6 4 45 45 H 0.97006 * 120.00567 * 180.02562 * 20 19 17 46 46 H 1.08997 * 110.96552 * 333.69987 * 27 25 2 47 47 H 1.08996 * 110.97135 * 97.42514 * 27 25 2 48 48 H 1.09004 * 110.48728 * 143.47119 * 28 27 25 49 49 H 1.08998 * 110.48551 * 266.11590 * 28 27 25 50 50 H 0.96997 * 124.35110 * 179.59707 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.3940 -1.8658 -1.1585 6 7 2.0797 -0.0617 -2.4110 7 6 1.7255 1.3620 -2.4929 8 6 2.8968 2.1146 -3.1527 9 1 2.6204 3.1492 -3.3559 10 6 4.1221 2.0545 -2.2322 11 6 4.5204 0.5929 -2.0170 12 6 4.8571 -0.0675 -3.3545 13 6 3.6401 -0.0023 -4.2857 14 1 3.8734 -0.4188 -5.2656 15 6 2.4804 -0.7704 -3.6344 16 7 3.2333 1.4111 -4.4055 17 6 3.1704 2.0394 -5.6206 18 1 2.9986 1.4636 -6.5180 19 6 3.3276 3.4164 -5.6989 20 7 4.1016 4.0404 -4.8364 21 14 2.4409 4.3836 -7.0284 22 1 1.1644 4.9144 -6.4862 23 1 3.2970 5.5123 -7.4737 24 1 2.1563 3.4929 -8.1820 25 6 2.0402 -0.7212 1.2491 26 1 1.7119 -1.7606 1.2444 27 6 1.5351 -0.0070 2.5225 28 6 2.7371 -0.1812 3.4794 29 6 3.9238 -0.3532 2.5570 30 8 5.0845 -0.2397 2.8898 31 7 3.5045 -0.6494 1.3147 32 1 -0.3632 -1.0208 0.1195 33 1 -0.3633 0.4069 -0.9437 34 1 -0.3633 0.6138 0.8243 35 1 0.8245 1.4812 -3.0948 36 1 1.5540 1.7549 -1.4907 37 1 4.9501 2.5934 -2.6926 38 1 3.8790 2.5105 -1.2724 39 1 5.3838 0.5465 -1.3534 40 1 3.6880 0.0531 -1.5654 41 1 5.1385 -1.1085 -3.1958 42 1 5.6903 0.4707 -3.8064 43 1 2.8053 -1.7799 -3.3829 44 1 1.6367 -0.8180 -4.3229 45 1 4.2112 5.0027 -4.8909 46 1 1.3415 1.0477 2.3274 47 1 0.6462 -0.4980 2.9186 48 1 2.8621 0.7060 4.1003 49 1 2.6051 -1.0672 4.1004 50 1 4.0941 -0.7969 0.5587 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039926613.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:41 Heat of formation + Delta-G solvation = -27.119489 kcal Electronic energy + Delta-G solvation = -32276.078005 eV Core-core repulsion = 28304.281376 eV Total energy + Delta-G solvation = -3971.796629 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.21799 -40.03996 -38.02836 -36.60750 -34.21080 -33.36009 -32.65915 -31.85725 -31.35773 -30.45586 -27.12872 -26.86186 -25.77101 -24.48557 -23.42445 -21.80066 -21.57850 -20.98019 -20.49117 -19.13271 -18.35128 -17.74089 -17.21290 -16.40862 -16.09108 -15.63758 -15.22736 -14.81745 -14.58498 -14.19265 -13.92671 -13.85891 -13.65221 -13.60548 -13.24959 -13.14154 -12.97533 -12.93413 -12.58527 -12.36558 -12.22398 -12.13330 -11.94250 -11.65249 -11.51389 -11.39551 -11.30645 -11.12240 -10.95860 -10.76226 -10.35268 -10.20072 -10.13904 -10.10763 -9.88571 -9.72839 -9.44219 -9.29119 -9.11416 -8.55717 -7.98234 -6.78246 -5.96056 -3.26882 2.58637 2.77191 3.25695 3.30308 3.34332 3.40973 3.41595 4.13006 4.23968 4.38780 4.43134 4.63941 4.88712 4.91969 4.96321 5.01151 5.13836 5.21508 5.39076 5.44018 5.49734 5.58609 5.60632 5.63807 5.64535 5.70492 5.74620 5.84683 5.85668 5.89582 5.97862 6.06922 6.15865 6.27736 6.34624 6.40182 6.50750 6.61214 6.77161 6.78728 6.93562 6.97299 7.02671 7.06340 7.22518 7.42810 7.71440 7.78759 8.23667 8.24346 8.37903 9.01380 9.67611 10.30310 11.10715 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017667 B = 0.003861 C = 0.003785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.538495 B = 7250.312547 C = 7395.274355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.127 4.127 3 H 0.103 0.897 4 C 0.516 3.484 5 O -0.555 6.555 6 N -0.585 5.585 7 C 0.084 3.916 8 C 0.179 3.821 9 H 0.101 0.899 10 C -0.117 4.117 11 C -0.135 4.135 12 C -0.122 4.122 13 C 0.153 3.847 14 H 0.079 0.921 15 C 0.100 3.900 16 N -0.576 5.576 17 C -0.263 4.263 18 H 0.069 0.931 19 C 0.014 3.986 20 N -0.879 5.879 21 Si 0.887 3.113 22 H -0.287 1.287 23 H -0.293 1.293 24 H -0.278 1.278 25 C 0.150 3.850 26 H 0.093 0.907 27 C -0.128 4.128 28 C -0.156 4.156 29 C 0.516 3.484 30 O -0.540 6.540 31 N -0.719 5.719 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.034 0.966 39 H 0.032 0.968 40 H 0.073 0.927 41 H 0.043 0.957 42 H 0.057 0.943 43 H 0.082 0.918 44 H 0.063 0.937 45 H 0.254 0.746 46 H 0.086 0.914 47 H 0.093 0.907 48 H 0.101 0.899 49 H 0.103 0.897 50 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.538 -6.521 12.572 17.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.149 4.149 3 H 0.121 0.879 4 C 0.305 3.695 5 O -0.435 6.435 6 N -0.316 5.316 7 C -0.040 4.040 8 C 0.071 3.929 9 H 0.119 0.881 10 C -0.156 4.156 11 C -0.173 4.173 12 C -0.162 4.162 13 C 0.045 3.955 14 H 0.097 0.903 15 C -0.023 4.023 16 N -0.297 5.297 17 C -0.392 4.392 18 H 0.086 0.914 19 C -0.187 4.187 20 N -0.520 5.520 21 Si 0.717 3.283 22 H -0.214 1.214 23 H -0.220 1.220 24 H -0.203 1.203 25 C 0.044 3.956 26 H 0.110 0.890 27 C -0.166 4.166 28 C -0.196 4.196 29 C 0.302 3.698 30 O -0.417 6.417 31 N -0.375 5.375 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.053 0.947 39 H 0.051 0.949 40 H 0.091 0.909 41 H 0.062 0.938 42 H 0.076 0.924 43 H 0.100 0.900 44 H 0.081 0.919 45 H 0.064 0.936 46 H 0.105 0.895 47 H 0.111 0.889 48 H 0.120 0.880 49 H 0.121 0.879 50 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -8.754 -6.857 12.817 16.968 hybrid contribution -0.085 0.738 -1.180 1.394 sum -8.839 -6.119 11.637 15.843 Atomic orbital electron populations 1.21702 0.91551 1.03118 1.03335 1.21785 0.98529 1.01524 0.93036 0.87876 1.20184 0.77966 0.86738 0.84622 1.90685 1.49849 1.17505 1.85449 1.48130 1.64641 1.11334 1.07511 1.22808 1.00463 0.79999 1.00731 1.21054 0.89929 0.96563 0.85308 0.88144 1.21839 1.01040 0.95116 0.97558 1.21991 1.00465 0.97650 0.97176 1.21891 0.99346 0.98292 0.96638 1.21221 0.90718 0.87144 0.96393 0.90339 1.22257 0.98749 0.96250 0.85091 1.44449 1.76288 1.06160 1.02760 1.19066 1.44334 0.90105 0.85687 0.91364 1.24854 0.97974 0.98063 0.97845 1.70223 1.33674 1.08807 1.39315 0.86512 0.80016 0.79875 0.81935 1.21448 1.21989 1.20326 1.21538 0.80082 1.00343 0.93669 0.88961 1.22732 0.98031 1.02173 0.93672 1.22351 0.93722 1.05070 0.98458 1.20872 0.89886 0.75261 0.83743 1.90754 1.20179 1.51926 1.78853 1.46385 1.08161 1.71094 1.11821 0.91656 0.91342 0.90995 0.91490 0.90936 0.90346 0.94690 0.94885 0.90880 0.93831 0.92395 0.89996 0.91917 0.93601 0.89533 0.88887 0.88035 0.87862 0.74692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 8.68 37.16 0.32 -0.81 16 2 C -0.13 -1.37 1.54 -91.77 -0.14 -1.51 16 3 H 0.10 1.13 6.31 -51.93 -0.33 0.81 16 4 C 0.52 7.55 3.69 -10.99 -0.04 7.51 16 5 O -0.56 -9.54 15.10 5.55 0.08 -9.46 16 6 N -0.58 -9.22 1.64 -171.95 -0.28 -9.50 16 7 C 0.08 1.34 5.28 -3.24 -0.02 1.32 16 8 C 0.18 3.63 2.73 -66.60 -0.18 3.45 16 9 H 0.10 2.32 6.24 -51.93 -0.32 2.00 16 10 C -0.12 -2.31 5.63 -26.54 -0.15 -2.46 16 11 C -0.13 -2.50 5.56 -26.77 -0.15 -2.64 16 12 C -0.12 -2.36 5.56 -26.58 -0.15 -2.50 16 13 C 0.15 2.98 3.62 -66.85 -0.24 2.74 16 14 H 0.08 1.53 8.01 -51.93 -0.42 1.11 16 15 C 0.10 1.71 5.90 -3.49 -0.02 1.69 16 16 N -0.58 -12.76 2.53 -155.15 -0.39 -13.15 16 17 C -0.26 -6.61 9.61 -15.06 -0.14 -6.75 16 18 H 0.07 1.73 8.00 -52.49 -0.42 1.31 16 19 C 0.01 0.35 4.61 -17.43 -0.08 0.27 16 20 N -0.88 -23.42 11.87 55.49 0.66 -22.76 16 21 Si 0.89 20.20 29.65 -169.99 -5.04 15.16 16 22 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 25 C 0.15 1.51 2.58 -67.01 -0.17 1.33 16 26 H 0.09 0.97 7.85 -51.93 -0.41 0.56 16 27 C -0.13 -0.87 5.67 -25.10 -0.14 -1.01 16 28 C -0.16 -1.31 6.86 -26.74 -0.18 -1.50 16 29 C 0.52 6.99 8.43 -10.86 -0.09 6.90 16 30 O -0.54 -9.72 18.03 5.56 0.10 -9.62 16 31 N -0.72 -9.34 5.68 -52.76 -0.30 -9.64 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.61 7.60 -51.93 -0.39 0.22 16 34 H 0.07 0.41 7.40 -51.93 -0.38 0.03 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.07 0.96 5.36 -51.93 -0.28 0.68 16 37 H 0.08 1.85 8.02 -51.93 -0.42 1.43 16 38 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 1.25 2.36 -51.94 -0.12 1.13 16 41 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 43 H 0.08 1.39 6.98 -51.93 -0.36 1.03 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.25 6.63 8.31 -40.82 -0.34 6.29 16 46 H 0.09 0.53 7.78 -51.93 -0.40 0.12 16 47 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 49 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 50 H 0.41 6.21 8.07 -40.82 -0.33 5.89 16 LS Contribution 371.48 15.07 5.60 5.60 Total: -1.00 -30.60 371.48 -9.11 -39.70 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -7.95 Total: 7.67 kcal Atomic # 6 Polarization: 7.60 SS G_CDS: -1.58 Total: 6.01 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: -0.31 Total: -55.06 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: 0.18 Total: -19.08 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.04 Total: 15.16 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.60 -9.11 -39.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039926613.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.582 kcal (2) G-P(sol) polarization free energy of solvation -30.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds