Wall clock time and date at job start Tue Mar 31 2020 19:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 5 5 C 1.50703 * 109.46970 * 175.00092 * 4 2 1 6 6 O 1.21282 * 119.99998 * 359.97438 * 5 4 2 7 7 N 1.34777 * 120.00049 * 180.02562 * 5 4 2 8 8 C 1.46668 * 125.33636 * 179.97438 * 7 5 4 9 9 C 1.53719 * 107.94188 * 180.54327 * 8 7 5 10 10 H 1.09004 * 112.56614 * 139.72381 * 9 8 7 11 11 C 1.53698 * 109.34635 * 266.25525 * 9 8 7 12 12 N 1.47170 * 107.73483 * 128.69290 * 11 9 8 13 13 C 1.36933 * 125.25433 * 180.40217 * 12 11 9 14 14 H 1.08007 * 119.99925 * 179.13592 * 13 12 11 15 15 C 1.38808 * 120.00254 * 359.13992 * 13 12 11 16 16 N 1.31628 * 119.99724 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00350 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.46948 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47512 * 119.99824 * 17 15 13 20 20 H 1.48505 * 109.47276 * 239.99728 * 17 15 13 21 21 C 1.46755 * 109.41085 * 359.65468 * 12 11 9 22 22 C 1.53930 * 106.72119 * 342.40599 * 21 12 11 23 23 H 1.08994 * 113.00833 * 150.82874 * 22 21 12 24 24 C 1.46768 * 125.33696 * 359.69041 * 7 5 4 25 25 N 1.46505 * 109.47212 * 120.00008 * 2 1 3 26 26 C 1.46757 * 124.34976 * 239.99655 * 25 2 1 27 27 C 1.54480 * 105.47452 * 197.01635 * 26 25 2 28 28 C 1.54623 * 101.76442 * 334.58942 * 27 26 25 29 29 C 1.34423 * 124.34555 * 59.70041 * 25 2 1 30 30 O 1.21277 * 124.94347 * 359.56687 * 29 25 2 31 31 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 32 32 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 34 34 H 1.09000 * 109.47059 * 294.99790 * 4 2 1 35 35 H 1.08996 * 109.47073 * 54.99883 * 4 2 1 36 36 H 1.08998 * 109.77657 * 300.17005 * 8 7 5 37 37 H 1.09001 * 109.76955 * 60.92670 * 8 7 5 38 38 H 1.08993 * 109.76003 * 247.19987 * 11 9 8 39 39 H 1.09001 * 109.75537 * 7.91680 * 11 9 8 40 40 H 0.96999 * 119.99748 * 180.02562 * 16 15 13 41 41 H 1.09001 * 110.00576 * 223.08759 * 21 12 11 42 42 H 1.08996 * 110.00757 * 101.72066 * 21 12 11 43 43 H 1.08996 * 110.02939 * 280.77461 * 24 7 5 44 44 H 1.09006 * 110.02504 * 42.19520 * 24 7 5 45 45 H 1.08998 * 110.25068 * 316.02214 * 26 25 2 46 46 H 1.09009 * 110.24149 * 78.01889 * 26 25 2 47 47 H 1.09004 * 110.96808 * 92.70429 * 27 26 25 48 48 H 1.08999 * 110.97125 * 216.46449 * 27 26 25 49 49 H 1.09000 * 110.48761 * 143.47654 * 28 27 26 50 50 H 1.09007 * 110.48661 * 265.98666 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5418 -0.6149 -1.3128 6 8 4.1449 -0.0204 -0.4446 7 7 4.2148 -1.1796 -2.3349 8 6 5.6703 -1.1477 -2.5129 9 6 6.0052 -1.8993 -3.8113 10 1 6.7901 -1.4094 -4.3876 11 6 6.3264 -3.3658 -3.4823 12 7 5.5022 -4.2129 -4.3593 13 6 5.4995 -5.5822 -4.3605 14 1 4.8481 -6.1204 -5.0332 15 6 6.3339 -6.2787 -3.4972 16 7 7.1282 -5.6229 -2.6776 17 14 6.3308 -8.1467 -3.4993 18 1 5.3562 -8.6389 -4.5060 19 1 7.6881 -8.6437 -3.8395 20 1 5.9450 -8.6426 -2.1537 21 6 4.6714 -3.3618 -5.2190 22 6 4.6522 -1.9646 -4.5733 23 1 4.5281 -1.1614 -5.2995 24 6 3.6065 -1.9279 -3.4413 25 7 2.0183 -0.6906 1.1962 26 6 2.8656 -0.0713 2.2220 27 6 3.4724 -1.2466 3.0201 28 6 2.4205 -2.3572 2.7946 29 6 1.7432 -1.9713 1.4979 30 8 1.0546 -2.7106 0.8270 31 1 -0.3635 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5137 0.8900 34 1 1.7515 -1.7715 -1.2057 35 1 1.6053 -0.2617 -2.1370 36 1 6.0102 -0.1147 -2.5865 37 1 6.1558 -1.6365 -1.6682 38 1 7.3787 -3.5666 -3.6832 39 1 6.1070 -3.5647 -2.4333 40 1 7.7115 -6.1096 -2.0746 41 1 3.6589 -3.7618 -5.2730 42 1 5.1042 -3.3052 -6.2178 43 1 3.3657 -2.9409 -3.1190 44 1 2.7047 -1.4204 -3.7840 45 1 3.6564 0.5153 1.7545 46 1 2.2645 0.5592 2.8774 47 1 4.4402 -1.5372 2.6113 48 1 3.5563 -0.9977 4.0780 49 1 2.9056 -3.3287 2.7004 50 1 1.6982 -2.3700 3.6109 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049166960.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:18 Heat of formation + Delta-G solvation = -37.104525 kcal Electronic energy + Delta-G solvation = -30927.118879 eV Core-core repulsion = 26954.889266 eV Total energy + Delta-G solvation = -3972.229612 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.71271 -39.89815 -38.16261 -36.27254 -34.99609 -34.75857 -32.27711 -30.74656 -29.93730 -29.39993 -28.03131 -27.48022 -25.48310 -25.35615 -23.21955 -22.32486 -21.93711 -20.11423 -19.50129 -19.25739 -18.51929 -17.09856 -16.87976 -16.66706 -16.39877 -16.04327 -15.28350 -14.96849 -14.55862 -14.37195 -13.98422 -13.72764 -13.67464 -13.62660 -13.24492 -13.04287 -12.99967 -12.81733 -12.66344 -12.06041 -12.03080 -11.93474 -11.87838 -11.76406 -11.53470 -11.47403 -11.44096 -11.20717 -10.99778 -10.87754 -10.82480 -10.41152 -10.10549 -10.05554 -9.85151 -9.64257 -9.55021 -9.53044 -8.65602 -8.60994 -8.28278 -6.84336 -5.72839 -3.06492 2.66569 2.86297 3.03550 3.27256 3.40184 3.45793 3.48135 4.34128 4.49339 4.50463 4.58195 4.73924 4.82892 4.84373 4.98265 5.03994 5.11791 5.21840 5.28357 5.39307 5.46298 5.49621 5.50798 5.57821 5.59113 5.62615 5.67407 5.71496 5.76342 5.80049 5.86270 5.90775 5.97913 6.02578 6.07021 6.18646 6.28400 6.39240 6.55146 6.57497 6.63091 6.66264 6.81100 7.21796 7.55696 7.56543 7.80461 7.82448 8.24825 8.26830 8.40666 9.20662 9.81703 10.45015 11.38865 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012134 B = 0.003708 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.920602 B = 7549.545517 C = 8524.292490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.175 3.825 3 H 0.094 0.906 4 C -0.157 4.157 5 C 0.530 3.470 6 O -0.549 6.549 7 N -0.607 5.607 8 C 0.123 3.877 9 C -0.124 4.124 10 H 0.090 0.910 11 C 0.186 3.814 12 N -0.603 5.603 13 C -0.230 4.230 14 H 0.079 0.921 15 C -0.006 4.006 16 N -0.921 5.921 17 Si 0.911 3.089 18 H -0.279 1.279 19 H -0.290 1.290 20 H -0.291 1.291 21 C 0.146 3.854 22 C -0.110 4.110 23 H 0.088 0.912 24 C 0.112 3.888 25 N -0.603 5.603 26 C 0.106 3.894 27 C -0.131 4.131 28 C -0.157 4.157 29 C 0.516 3.484 30 O -0.534 6.534 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.059 0.941 34 H 0.108 0.892 35 H 0.100 0.900 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.046 0.954 39 H 0.049 0.951 40 H 0.252 0.748 41 H 0.037 0.963 42 H 0.021 0.979 43 H 0.078 0.922 44 H 0.064 0.936 45 H 0.093 0.907 46 H 0.062 0.938 47 H 0.083 0.917 48 H 0.085 0.915 49 H 0.100 0.900 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.871 15.266 6.799 19.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.072 3.928 3 H 0.112 0.888 4 C -0.198 4.198 5 C 0.319 3.681 6 O -0.428 6.428 7 N -0.340 5.340 8 C 0.000 4.000 9 C -0.144 4.144 10 H 0.108 0.892 11 C 0.062 3.938 12 N -0.330 5.330 13 C -0.358 4.358 14 H 0.097 0.903 15 C -0.203 4.203 16 N -0.569 5.569 17 Si 0.742 3.258 18 H -0.205 1.205 19 H -0.217 1.217 20 H -0.218 1.218 21 C 0.020 3.980 22 C -0.130 4.130 23 H 0.107 0.893 24 C -0.011 4.011 25 N -0.337 5.337 26 C -0.017 4.017 27 C -0.168 4.168 28 C -0.197 4.197 29 C 0.304 3.696 30 O -0.412 6.412 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.126 0.874 35 H 0.118 0.882 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.055 0.945 42 H 0.039 0.961 43 H 0.096 0.904 44 H 0.083 0.917 45 H 0.111 0.889 46 H 0.080 0.920 47 H 0.102 0.898 48 H 0.104 0.896 49 H 0.118 0.882 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -9.865 15.090 7.007 19.342 hybrid contribution 0.155 -1.048 -0.035 1.060 sum -9.710 14.042 6.972 18.441 Atomic orbital electron populations 1.22184 0.94344 1.03867 1.02119 1.20625 0.93582 0.96117 0.82471 0.88822 1.22155 0.92798 1.05186 0.99651 1.20123 0.89499 0.78221 0.80230 1.90592 1.70460 1.43708 1.38029 1.48271 1.08061 1.53490 1.24168 1.21775 0.80274 0.99495 0.98453 1.23163 0.96811 1.00123 0.94266 0.89184 1.21194 0.95508 0.82345 0.94801 1.44359 1.45548 1.01719 1.41369 1.19087 1.19217 0.79907 1.17560 0.90322 1.24792 0.98832 0.98104 0.98551 1.69969 1.27764 1.33326 1.25802 0.86053 0.77275 0.85153 0.77340 1.20467 1.21735 1.21755 1.21147 0.95052 0.88241 0.93608 1.22928 0.94618 0.99172 0.96316 0.89348 1.22105 0.95782 0.96897 0.86296 1.48196 1.50791 1.12161 1.22515 1.22094 0.94309 0.95989 0.89317 1.22564 0.99034 0.94378 1.00862 1.22328 0.99375 1.01233 0.96777 1.20893 0.80147 0.81552 0.87035 1.90692 1.39763 1.54864 1.55833 0.91361 0.90764 0.92241 0.87355 0.88212 0.92484 0.91146 0.93560 0.93287 0.93790 0.94508 0.96113 0.90376 0.91741 0.88859 0.91968 0.89823 0.89594 0.88169 0.88270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.67 9.19 37.16 0.34 -1.32 16 2 C 0.18 2.05 2.43 -67.93 -0.16 1.88 16 3 H 0.09 1.02 7.88 -51.93 -0.41 0.61 16 4 C -0.16 -2.07 4.16 -27.88 -0.12 -2.19 16 5 C 0.53 8.55 7.70 -10.98 -0.08 8.46 16 6 O -0.55 -9.65 13.91 5.56 0.08 -9.57 16 7 N -0.61 -10.14 3.31 -172.18 -0.57 -10.71 16 8 C 0.12 2.12 6.23 -3.58 -0.02 2.10 16 9 C -0.12 -2.22 4.01 -88.60 -0.36 -2.58 16 10 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 11 C 0.19 4.41 4.77 -3.31 -0.02 4.40 16 12 N -0.60 -15.02 3.39 -171.50 -0.58 -15.60 16 13 C -0.23 -6.34 10.25 -15.06 -0.15 -6.50 16 14 H 0.08 2.10 7.83 -52.48 -0.41 1.69 16 15 C -0.01 -0.18 5.48 -17.43 -0.10 -0.28 16 16 N -0.92 -27.06 10.25 55.49 0.57 -26.49 16 17 Si 0.91 22.28 29.55 -169.99 -5.02 17.25 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 20 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 21 C 0.15 2.87 6.41 -3.42 -0.02 2.85 16 22 C -0.11 -1.79 4.14 -88.25 -0.37 -2.16 16 23 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 24 C 0.11 1.79 5.88 -3.30 -0.02 1.77 16 25 N -0.60 -7.64 2.20 -164.84 -0.36 -8.00 16 26 C 0.11 1.10 6.85 -3.13 -0.02 1.07 16 27 C -0.13 -1.26 7.18 -25.10 -0.18 -1.44 16 28 C -0.16 -1.75 6.86 -26.74 -0.18 -1.94 16 29 C 0.52 7.54 7.39 -10.86 -0.08 7.46 16 30 O -0.53 -9.65 15.07 5.56 0.08 -9.56 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.91 6.75 -51.93 -0.35 0.56 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.11 1.69 6.67 -51.93 -0.35 1.34 16 35 H 0.10 1.04 7.88 -51.93 -0.41 0.63 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.07 1.37 7.44 -51.93 -0.39 0.98 16 38 H 0.05 1.23 7.40 -51.93 -0.38 0.84 16 39 H 0.05 1.32 6.58 -51.93 -0.34 0.98 16 40 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.04 0.70 7.97 -51.93 -0.41 0.29 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.08 1.49 7.76 -51.93 -0.40 1.09 16 44 H 0.06 0.83 7.61 -51.93 -0.40 0.43 16 45 H 0.09 1.10 6.71 -51.93 -0.35 0.75 16 46 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 47 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 48 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 50 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 384.29 15.07 5.79 5.79 Total: -1.00 -33.54 384.29 -9.94 -43.48 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -8.38 Total: 1.82 kcal Atomic # 6 Polarization: 13.14 SS G_CDS: -1.54 Total: 11.60 kcal Atomic # 7 Polarization: -59.86 SS G_CDS: -0.95 Total: -60.80 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: 0.16 Total: -19.14 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.54 -9.94 -43.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049166960.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.375 kcal (2) G-P(sol) polarization free energy of solvation -33.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds