Wall clock time and date at job start Tue Mar 31 2020 19:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 5 5 C 1.50703 * 109.46970 * 175.00092 * 4 2 1 6 6 O 1.21282 * 119.99998 * 359.97438 * 5 4 2 7 7 N 1.34777 * 120.00049 * 180.02562 * 5 4 2 8 8 C 1.46668 * 125.33636 * 179.97438 * 7 5 4 9 9 C 1.53719 * 107.94188 * 180.54327 * 8 7 5 10 10 H 1.09004 * 112.56614 * 139.72381 * 9 8 7 11 11 C 1.53698 * 109.34635 * 266.25525 * 9 8 7 12 12 N 1.47170 * 107.73483 * 128.69290 * 11 9 8 13 13 C 1.36933 * 125.25433 * 180.40217 * 12 11 9 14 14 H 1.08007 * 119.99925 * 179.13592 * 13 12 11 15 15 C 1.38808 * 120.00254 * 359.13992 * 13 12 11 16 16 N 1.31628 * 119.99724 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00350 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.46948 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47512 * 119.99824 * 17 15 13 20 20 H 1.48505 * 109.47276 * 239.99728 * 17 15 13 21 21 C 1.46755 * 109.41085 * 359.65468 * 12 11 9 22 22 C 1.53930 * 106.72119 * 342.40599 * 21 12 11 23 23 H 1.08994 * 113.00833 * 150.82874 * 22 21 12 24 24 C 1.46768 * 125.33696 * 359.69041 * 7 5 4 25 25 N 1.46505 * 109.47212 * 120.00008 * 2 1 3 26 26 C 1.46757 * 124.34976 * 239.99655 * 25 2 1 27 27 C 1.54480 * 105.47452 * 197.01635 * 26 25 2 28 28 C 1.54623 * 101.76442 * 334.58942 * 27 26 25 29 29 C 1.34423 * 124.34555 * 59.70041 * 25 2 1 30 30 O 1.21277 * 124.94347 * 359.56687 * 29 25 2 31 31 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 32 32 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 34 34 H 1.09000 * 109.47059 * 294.99790 * 4 2 1 35 35 H 1.08996 * 109.47073 * 54.99883 * 4 2 1 36 36 H 1.08998 * 109.77657 * 300.17005 * 8 7 5 37 37 H 1.09001 * 109.76955 * 60.92670 * 8 7 5 38 38 H 1.08993 * 109.76003 * 247.19987 * 11 9 8 39 39 H 1.09001 * 109.75537 * 7.91680 * 11 9 8 40 40 H 0.96999 * 119.99748 * 180.02562 * 16 15 13 41 41 H 1.09001 * 110.00576 * 223.08759 * 21 12 11 42 42 H 1.08996 * 110.00757 * 101.72066 * 21 12 11 43 43 H 1.08996 * 110.02939 * 280.77461 * 24 7 5 44 44 H 1.09006 * 110.02504 * 42.19520 * 24 7 5 45 45 H 1.08998 * 110.25068 * 316.02214 * 26 25 2 46 46 H 1.09009 * 110.24149 * 78.01889 * 26 25 2 47 47 H 1.09004 * 110.96808 * 92.70429 * 27 26 25 48 48 H 1.08999 * 110.97125 * 216.46449 * 27 26 25 49 49 H 1.09000 * 110.48761 * 143.47654 * 28 27 26 50 50 H 1.09007 * 110.48661 * 265.98666 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5418 -0.6149 -1.3128 6 8 4.1449 -0.0204 -0.4446 7 7 4.2148 -1.1796 -2.3349 8 6 5.6703 -1.1477 -2.5129 9 6 6.0052 -1.8993 -3.8113 10 1 6.7901 -1.4094 -4.3876 11 6 6.3264 -3.3658 -3.4823 12 7 5.5022 -4.2129 -4.3593 13 6 5.4995 -5.5822 -4.3605 14 1 4.8481 -6.1204 -5.0332 15 6 6.3339 -6.2787 -3.4972 16 7 7.1282 -5.6229 -2.6776 17 14 6.3308 -8.1467 -3.4993 18 1 5.3562 -8.6389 -4.5060 19 1 7.6881 -8.6437 -3.8395 20 1 5.9450 -8.6426 -2.1537 21 6 4.6714 -3.3618 -5.2190 22 6 4.6522 -1.9646 -4.5733 23 1 4.5281 -1.1614 -5.2995 24 6 3.6065 -1.9279 -3.4413 25 7 2.0183 -0.6906 1.1962 26 6 2.8656 -0.0713 2.2220 27 6 3.4724 -1.2466 3.0201 28 6 2.4205 -2.3572 2.7946 29 6 1.7432 -1.9713 1.4979 30 8 1.0546 -2.7106 0.8270 31 1 -0.3635 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5137 0.8900 34 1 1.7515 -1.7715 -1.2057 35 1 1.6053 -0.2617 -2.1370 36 1 6.0102 -0.1147 -2.5865 37 1 6.1558 -1.6365 -1.6682 38 1 7.3787 -3.5666 -3.6832 39 1 6.1070 -3.5647 -2.4333 40 1 7.7115 -6.1096 -2.0746 41 1 3.6589 -3.7618 -5.2730 42 1 5.1042 -3.3052 -6.2178 43 1 3.3657 -2.9409 -3.1190 44 1 2.7047 -1.4204 -3.7840 45 1 3.6564 0.5153 1.7545 46 1 2.2645 0.5592 2.8774 47 1 4.4402 -1.5372 2.6113 48 1 3.5563 -0.9977 4.0780 49 1 2.9056 -3.3287 2.7004 50 1 1.6982 -2.3700 3.6109 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049166960.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:17 Heat of formation + Delta-G solvation = -58.318477 kcal Electronic energy + Delta-G solvation = -30928.038785 eV Core-core repulsion = 26954.889266 eV Total energy + Delta-G solvation = -3973.149518 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.84005 -41.19427 -39.56725 -37.39553 -36.55834 -35.80376 -34.13059 -32.20711 -31.11730 -30.96448 -29.14588 -28.40918 -27.17073 -27.02492 -24.65686 -23.44825 -22.80520 -21.87484 -20.85297 -20.62926 -19.63852 -18.88526 -18.12148 -17.86264 -17.49081 -17.34549 -16.66093 -16.45492 -16.02939 -15.74316 -15.54311 -15.08191 -14.75619 -14.71098 -14.54388 -14.37788 -14.30015 -13.87521 -13.76318 -13.63080 -13.37554 -13.29144 -13.11270 -12.94677 -12.86376 -12.77493 -12.71350 -12.67242 -12.43425 -12.11221 -11.96544 -11.90621 -11.89415 -11.86159 -11.54435 -11.37550 -10.87447 -10.70506 -10.63491 -9.65251 -9.63528 -8.89622 -7.87971 -5.22565 1.42177 1.43509 1.53353 1.56907 1.59154 2.00894 2.12255 2.46955 3.26241 3.31083 3.42100 3.52796 3.64053 3.67248 3.80266 3.83237 3.95040 4.02765 4.10966 4.21888 4.24491 4.28985 4.34298 4.45649 4.50471 4.57480 4.64700 4.66382 4.71468 4.71915 4.79264 4.82785 4.91423 4.92665 4.95762 5.01151 5.02795 5.06995 5.20850 5.24436 5.29636 5.38417 5.45843 5.61143 5.70875 5.74468 6.18499 6.22304 6.52466 7.08374 7.11659 7.19995 7.77847 8.39181 9.22462 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012134 B = 0.003708 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.920602 B = 7549.545517 C = 8524.292490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.168 3.832 3 H 0.109 0.891 4 C -0.149 4.149 5 C 0.524 3.476 6 O -0.566 6.566 7 N -0.613 5.613 8 C 0.129 3.871 9 C -0.113 4.113 10 H 0.116 0.884 11 C 0.200 3.800 12 N -0.626 5.626 13 C -0.238 4.238 14 H 0.085 0.915 15 C -0.067 4.067 16 N -0.952 5.952 17 Si 0.974 3.026 18 H -0.262 1.262 19 H -0.290 1.290 20 H -0.298 1.298 21 C 0.138 3.862 22 C -0.091 4.091 23 H 0.139 0.861 24 C 0.115 3.885 25 N -0.603 5.603 26 C 0.104 3.896 27 C -0.123 4.123 28 C -0.155 4.155 29 C 0.499 3.501 30 O -0.580 6.580 31 H 0.093 0.907 32 H 0.046 0.954 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.135 0.865 36 H 0.082 0.918 37 H 0.034 0.966 38 H 0.006 0.994 39 H 0.001 0.999 40 H 0.244 0.756 41 H 0.044 0.956 42 H 0.035 0.965 43 H 0.037 0.963 44 H 0.108 0.892 45 H 0.079 0.921 46 H 0.096 0.904 47 H 0.059 0.941 48 H 0.123 0.877 49 H 0.086 0.914 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.618 17.808 6.036 22.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.065 3.935 3 H 0.127 0.873 4 C -0.190 4.190 5 C 0.314 3.686 6 O -0.446 6.446 7 N -0.346 5.346 8 C 0.006 3.994 9 C -0.133 4.133 10 H 0.134 0.866 11 C 0.075 3.925 12 N -0.352 5.352 13 C -0.367 4.367 14 H 0.103 0.897 15 C -0.260 4.260 16 N -0.602 5.602 17 Si 0.803 3.197 18 H -0.187 1.187 19 H -0.217 1.217 20 H -0.225 1.225 21 C 0.013 3.987 22 C -0.110 4.110 23 H 0.157 0.843 24 C -0.007 4.007 25 N -0.336 5.336 26 C -0.018 4.018 27 C -0.160 4.160 28 C -0.195 4.195 29 C 0.288 3.712 30 O -0.461 6.461 31 H 0.112 0.888 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.153 0.847 36 H 0.100 0.900 37 H 0.053 0.947 38 H 0.024 0.976 39 H 0.020 0.980 40 H 0.053 0.947 41 H 0.062 0.938 42 H 0.052 0.948 43 H 0.055 0.945 44 H 0.126 0.874 45 H 0.097 0.903 46 H 0.114 0.886 47 H 0.078 0.922 48 H 0.141 0.859 49 H 0.105 0.895 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -11.628 17.674 6.219 22.051 hybrid contribution 0.708 -1.828 0.199 1.970 sum -10.921 15.846 6.418 20.287 Atomic orbital electron populations 1.22099 0.92767 1.02583 1.03989 1.20852 0.94787 0.96332 0.81480 0.87323 1.22170 0.90535 1.04093 1.02171 1.20722 0.90710 0.77597 0.79561 1.90582 1.71142 1.44526 1.38360 1.48390 1.07713 1.53605 1.24863 1.21617 0.80937 1.00172 0.96702 1.23017 0.98911 0.95985 0.95359 0.86556 1.20828 0.93209 0.86228 0.92267 1.44673 1.46583 1.01658 1.42284 1.19503 1.18477 0.81785 1.16950 0.89728 1.25623 0.99165 1.02398 0.98826 1.70211 1.28718 1.34550 1.26692 0.85067 0.77385 0.80189 0.77101 1.18661 1.21721 1.22528 1.21397 0.94436 0.89422 0.93445 1.22986 0.92955 0.98433 0.96670 0.84344 1.22081 0.97426 0.95339 0.85883 1.48417 1.50259 1.11804 1.23092 1.22263 0.94200 0.96197 0.89166 1.22577 0.97169 0.93430 1.02864 1.22378 1.00079 1.01024 0.96061 1.21509 0.79891 0.81969 0.87856 1.90656 1.41936 1.56112 1.57433 0.88814 0.93496 0.91068 0.90010 0.84739 0.90004 0.94724 0.97550 0.98038 0.94666 0.93827 0.94755 0.94486 0.87412 0.90255 0.88590 0.92219 0.85917 0.89543 0.85514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 9.19 71.98 0.66 -2.13 16 2 C 0.17 3.64 2.43 44.99 0.11 3.75 16 3 H 0.11 2.05 7.88 -2.39 -0.02 2.03 16 4 C -0.15 -3.73 4.16 29.85 0.12 -3.60 16 5 C 0.52 16.45 7.70 87.66 0.67 17.12 16 6 O -0.57 -19.62 13.91 -3.04 -0.04 -19.66 16 7 N -0.61 -19.94 3.31 -817.06 -2.71 -22.64 16 8 C 0.13 4.42 6.23 86.59 0.54 4.96 16 9 C -0.11 -3.96 4.01 -9.48 -0.04 -4.00 16 10 H 0.12 3.51 8.14 -2.39 -0.02 3.49 16 11 C 0.20 9.92 4.77 86.49 0.41 10.33 16 12 N -0.63 -31.82 3.39 -696.50 -2.36 -34.18 16 13 C -0.24 -13.47 10.25 84.03 0.86 -12.60 16 14 H 0.08 4.55 7.83 -2.91 -0.02 4.53 16 15 C -0.07 -3.93 5.48 84.86 0.47 -3.47 16 16 N -0.95 -59.12 10.25 21.65 0.22 -58.90 16 17 Si 0.97 47.15 29.55 68.60 2.03 49.18 16 18 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 19 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 20 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 21 C 0.14 5.21 6.41 86.64 0.56 5.77 16 22 C -0.09 -2.69 4.14 -9.26 -0.04 -2.73 16 23 H 0.14 2.89 8.14 -2.39 -0.02 2.87 16 24 C 0.12 3.47 5.88 86.72 0.51 3.98 16 25 N -0.60 -14.81 2.20 -794.02 -1.75 -16.56 16 26 C 0.10 1.98 6.85 86.83 0.60 2.58 16 27 C -0.12 -2.24 7.18 31.65 0.23 -2.01 16 28 C -0.16 -3.44 6.86 30.59 0.21 -3.23 16 29 C 0.50 14.81 7.39 87.90 0.65 15.46 16 30 O -0.58 -21.88 15.07 -3.02 -0.05 -21.93 16 31 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.05 1.12 6.75 -2.39 -0.02 1.11 16 33 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.08 2.58 6.67 -2.39 -0.02 2.56 16 35 H 0.13 2.34 7.88 -2.39 -0.02 2.32 16 36 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.03 1.43 7.44 -2.39 -0.02 1.41 16 38 H 0.01 0.35 7.40 -2.39 -0.02 0.34 16 39 H 0.00 0.08 6.58 -2.39 -0.02 0.07 16 40 H 0.24 14.82 8.31 -92.71 -0.77 14.05 16 41 H 0.04 1.59 7.97 -2.39 -0.02 1.58 16 42 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.04 1.43 7.76 -2.39 -0.02 1.41 16 44 H 0.11 2.33 7.61 -2.38 -0.02 2.31 16 45 H 0.08 1.78 6.71 -2.39 -0.02 1.77 16 46 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 47 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 48 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 49 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 50 H 0.13 2.06 8.14 -2.38 -0.02 2.04 16 Total: -1.00 -79.85 384.29 2.79 -77.07 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: 0.92 Total: 17.46 kcal Atomic # 6 Polarization: 23.65 SS G_CDS: 6.52 Total: 30.17 kcal Atomic # 7 Polarization: -125.68 SS G_CDS: -6.59 Total: -132.28 kcal Atomic # 8 Polarization: -41.51 SS G_CDS: -0.09 Total: -41.59 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 2.03 Total: 49.18 kcal Total: -79.85 2.79 -77.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049166960.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.749 kcal (2) G-P(sol) polarization free energy of solvation -79.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds