Wall clock time and date at job start Tue Mar 31 2020 19:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46626 * 119.99699 * 2 1 3 5 5 C 1.50709 * 109.46788 * 184.99743 * 4 2 1 6 6 O 1.21278 * 120.00020 * 0.02562 * 5 4 2 7 7 N 1.34782 * 119.99779 * 180.02562 * 5 4 2 8 8 C 1.46664 * 125.33294 * 180.02562 * 7 5 4 9 9 C 1.53730 * 107.94033 * 180.52324 * 8 7 5 10 10 H 1.08994 * 112.56650 * 139.71634 * 9 8 7 11 11 C 1.53689 * 109.34000 * 266.25240 * 9 8 7 12 12 N 1.47165 * 107.73884 * 128.69218 * 11 9 8 13 13 C 1.36933 * 125.25975 * 180.36209 * 12 11 9 14 14 H 1.07997 * 120.00479 * 179.18223 * 13 12 11 15 15 C 1.38818 * 119.99893 * 359.17537 * 13 12 11 16 16 N 1.31613 * 119.99751 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00083 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46894 * 60.00866 * 17 15 13 19 19 H 1.48497 * 109.46893 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47366 * 300.00613 * 17 15 13 21 21 C 1.46747 * 109.41188 * 359.65211 * 12 11 9 22 22 C 1.53931 * 106.71838 * 342.40565 * 21 12 11 23 23 H 1.09002 * 113.01205 * 150.82853 * 22 21 12 24 24 C 1.46774 * 125.33685 * 359.69347 * 7 5 4 25 25 N 1.46492 * 109.47363 * 239.99860 * 2 1 3 26 26 C 1.46766 * 124.35124 * 119.99981 * 25 2 1 27 27 C 1.54479 * 105.47402 * 197.02033 * 26 25 2 28 28 C 1.54632 * 101.76575 * 334.58318 * 27 26 25 29 29 C 1.34424 * 124.35190 * 299.70718 * 25 2 1 30 30 O 1.21286 * 124.93953 * 359.56164 * 29 25 2 31 31 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 32 32 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 34 34 H 1.08993 * 109.47768 * 305.00075 * 4 2 1 35 35 H 1.09005 * 109.47260 * 65.00844 * 4 2 1 36 36 H 1.09001 * 109.76881 * 300.13696 * 8 7 5 37 37 H 1.08996 * 109.77664 * 60.90374 * 8 7 5 38 38 H 1.09005 * 109.75772 * 247.19942 * 11 9 8 39 39 H 1.09002 * 109.76197 * 7.90589 * 11 9 8 40 40 H 0.97005 * 119.99892 * 179.97438 * 16 15 13 41 41 H 1.08997 * 110.01199 * 223.09416 * 21 12 11 42 42 H 1.09004 * 110.01086 * 101.71456 * 21 12 11 43 43 H 1.08994 * 110.02906 * 280.79658 * 24 7 5 44 44 H 1.09000 * 110.02602 * 42.22143 * 24 7 5 45 45 H 1.09001 * 110.24530 * 316.01812 * 26 25 2 46 46 H 1.08998 * 110.24646 * 78.01838 * 26 25 2 47 47 H 1.08998 * 110.97178 * 92.70381 * 27 26 25 48 48 H 1.09008 * 110.96608 * 216.46583 * 27 26 25 49 49 H 1.08998 * 110.48569 * 143.47577 * 28 27 26 50 50 H 1.09000 * 110.48360 * 265.99245 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5419 -0.6149 1.3128 6 8 4.1450 -0.0205 0.4446 7 7 4.2149 -1.1805 2.3344 8 6 5.6704 -1.1487 2.5123 9 6 6.0077 -1.9246 3.7959 10 1 6.9000 -2.5413 3.6896 11 6 6.0909 -0.9439 4.9763 12 7 5.2351 -1.4657 6.0539 13 6 5.0414 -0.8665 7.2698 14 1 4.3822 -1.3188 7.9959 15 6 5.6927 0.3223 7.5693 16 7 6.4958 0.8737 6.6844 17 14 5.4280 1.1401 9.2278 18 1 5.8539 0.2156 10.3091 19 1 6.2303 2.3876 9.2981 20 1 3.9891 1.4673 9.3944 21 6 4.6088 -2.7185 5.6159 22 6 4.7296 -2.7614 4.0820 23 1 4.7822 -3.7759 3.6869 24 6 3.6056 -1.9189 3.4470 25 7 2.0184 -0.6906 -1.1961 26 6 2.8657 -0.0712 -2.2220 27 6 2.7610 -0.9950 -3.4558 28 6 2.4039 -2.3514 -2.8047 29 6 1.7528 -1.9746 -1.4922 30 8 1.0860 -2.7217 -0.8078 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.6053 -0.2617 2.1370 35 1 1.7517 -1.7715 1.2056 36 1 6.1566 -1.6201 1.6581 37 1 6.0080 -0.1166 2.6058 38 1 7.1182 -0.8869 5.3363 39 1 5.7562 0.0438 4.6592 40 1 6.9506 1.7046 6.8935 41 1 3.5588 -2.7325 5.9078 42 1 5.1299 -3.5694 6.0550 43 1 3.1988 -1.2217 4.1794 44 1 2.8165 -2.5718 3.0739 45 1 2.4968 0.9253 -2.4646 46 1 3.8983 -0.0184 -1.8770 47 1 1.9677 -0.6630 -4.1255 48 1 3.7142 -1.0534 -3.9813 49 1 1.7074 -2.9051 -3.4342 50 1 3.3052 -2.9381 -2.6268 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049166961.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:21 Heat of formation + Delta-G solvation = -37.671612 kcal Electronic energy + Delta-G solvation = -30586.555306 eV Core-core repulsion = 26614.301103 eV Total energy + Delta-G solvation = -3972.254203 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.79119 -39.92844 -38.17878 -36.39256 -35.03866 -34.77940 -32.29183 -30.77104 -30.01201 -29.40605 -28.04443 -27.61388 -25.48458 -25.36250 -23.23075 -22.37126 -22.05776 -20.11829 -19.52980 -19.25914 -18.61129 -17.14003 -16.96773 -16.64475 -16.50081 -15.89992 -15.47453 -15.00283 -14.59366 -14.38575 -14.04382 -13.86066 -13.79187 -13.70243 -13.24782 -13.11073 -13.00662 -12.84336 -12.60906 -12.15259 -12.06851 -12.01666 -11.89588 -11.73202 -11.68146 -11.47371 -11.45763 -11.24021 -11.15894 -10.90998 -10.81503 -10.40907 -10.12902 -10.10648 -9.85812 -9.67447 -9.64176 -9.54321 -8.72953 -8.62459 -8.28324 -6.86235 -5.74509 -3.08303 2.54747 2.85747 2.94696 3.26724 3.38573 3.43087 3.44356 4.22095 4.33367 4.47252 4.56989 4.63998 4.71493 4.84894 4.89418 5.02688 5.08612 5.24658 5.26856 5.36156 5.44272 5.45922 5.48804 5.50944 5.57217 5.57982 5.60845 5.62403 5.66356 5.71334 5.80913 5.91364 5.92314 5.97864 6.04214 6.18200 6.28306 6.38143 6.54406 6.55828 6.57941 6.65044 6.81008 7.13017 7.53509 7.55460 7.78563 7.82169 8.14439 8.23151 8.40275 9.18802 9.79792 10.43662 11.36923 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019780 B = 0.002829 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.197096 B = 9893.730357 C =10080.064670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.174 3.826 3 H 0.096 0.904 4 C -0.157 4.157 5 C 0.530 3.470 6 O -0.550 6.550 7 N -0.607 5.607 8 C 0.123 3.877 9 C -0.124 4.124 10 H 0.090 0.910 11 C 0.186 3.814 12 N -0.603 5.603 13 C -0.231 4.231 14 H 0.078 0.922 15 C -0.007 4.007 16 N -0.921 5.921 17 Si 0.912 3.088 18 H -0.285 1.285 19 H -0.290 1.290 20 H -0.285 1.285 21 C 0.147 3.853 22 C -0.111 4.111 23 H 0.088 0.912 24 C 0.112 3.888 25 N -0.600 5.600 26 C 0.105 3.895 27 C -0.132 4.132 28 C -0.156 4.156 29 C 0.515 3.485 30 O -0.539 6.539 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.055 0.945 37 H 0.072 0.928 38 H 0.046 0.954 39 H 0.050 0.950 40 H 0.253 0.747 41 H 0.037 0.963 42 H 0.021 0.979 43 H 0.078 0.922 44 H 0.065 0.935 45 H 0.073 0.927 46 H 0.087 0.913 47 H 0.078 0.922 48 H 0.088 0.912 49 H 0.097 0.903 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.240 -4.012 -18.984 21.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.071 3.929 3 H 0.114 0.886 4 C -0.198 4.198 5 C 0.319 3.681 6 O -0.429 6.429 7 N -0.340 5.340 8 C 0.000 4.000 9 C -0.144 4.144 10 H 0.108 0.892 11 C 0.062 3.938 12 N -0.330 5.330 13 C -0.359 4.359 14 H 0.096 0.904 15 C -0.203 4.203 16 N -0.569 5.569 17 Si 0.743 3.257 18 H -0.211 1.211 19 H -0.216 1.216 20 H -0.212 1.212 21 C 0.020 3.980 22 C -0.131 4.131 23 H 0.106 0.894 24 C -0.011 4.011 25 N -0.333 5.333 26 C -0.018 4.018 27 C -0.170 4.170 28 C -0.196 4.196 29 C 0.303 3.697 30 O -0.417 6.417 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.121 0.879 35 H 0.125 0.875 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.055 0.945 42 H 0.039 0.961 43 H 0.096 0.904 44 H 0.083 0.917 45 H 0.092 0.908 46 H 0.105 0.895 47 H 0.097 0.903 48 H 0.106 0.894 49 H 0.116 0.884 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -8.248 -3.790 -18.958 21.019 hybrid contribution 0.028 0.502 1.021 1.138 sum -8.220 -3.288 -17.938 20.003 Atomic orbital electron populations 1.22177 0.94216 1.03709 1.02329 1.20661 0.93645 0.96341 0.82277 0.88632 1.22152 0.92848 1.04883 0.99893 1.20127 0.89484 0.78170 0.80326 1.90599 1.70445 1.43276 1.38542 1.48271 1.08079 1.53930 1.23694 1.21778 0.80103 1.01091 0.97028 1.23161 0.97333 0.97804 0.96060 0.89216 1.21194 0.95763 0.92888 0.83981 1.44342 1.52512 1.22243 1.13899 1.18991 1.23116 1.03465 0.90330 0.90439 1.24799 0.99327 0.97887 0.98290 1.69944 1.32785 1.20349 1.33776 0.86197 0.77467 0.78742 0.83327 1.21144 1.21620 1.21190 1.21142 0.96590 0.90417 0.89859 1.22929 0.94497 0.97961 0.97667 0.89382 1.22112 0.95957 0.94681 0.88365 1.48217 1.50273 1.12012 1.22847 1.22129 0.96587 0.96519 0.86550 1.22609 1.03127 0.94178 0.97120 1.22316 1.02719 0.98917 0.95638 1.20853 0.79745 0.81651 0.87484 1.90680 1.40472 1.54538 1.55976 0.92216 0.90926 0.91135 0.87885 0.87501 0.92615 0.91011 0.93579 0.93229 0.93664 0.94493 0.96119 0.90350 0.91664 0.90849 0.89528 0.90332 0.89369 0.88418 0.88117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.66 9.20 37.16 0.34 -1.32 16 2 C 0.17 2.03 2.43 -67.93 -0.16 1.86 16 3 H 0.10 1.11 7.88 -51.93 -0.41 0.70 16 4 C -0.16 -2.08 4.16 -27.88 -0.12 -2.19 16 5 C 0.53 8.59 7.70 -10.98 -0.08 8.51 16 6 O -0.55 -9.75 13.96 5.56 0.08 -9.67 16 7 N -0.61 -10.19 3.31 -172.17 -0.57 -10.76 16 8 C 0.12 2.13 6.23 -3.57 -0.02 2.11 16 9 C -0.12 -2.23 4.01 -88.60 -0.36 -2.59 16 10 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 11 C 0.19 4.36 4.77 -3.32 -0.02 4.35 16 12 N -0.60 -14.81 3.39 -171.51 -0.58 -15.39 16 13 C -0.23 -6.27 10.25 -15.06 -0.15 -6.42 16 14 H 0.08 2.03 7.83 -52.49 -0.41 1.61 16 15 C -0.01 -0.18 5.48 -17.43 -0.10 -0.28 16 16 N -0.92 -26.65 10.24 55.49 0.57 -26.08 16 17 Si 0.91 21.85 29.55 -169.99 -5.02 16.83 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 21 C 0.15 2.86 6.41 -3.42 -0.02 2.84 16 22 C -0.11 -1.83 4.14 -88.24 -0.37 -2.19 16 23 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 24 C 0.11 1.78 5.87 -3.29 -0.02 1.77 16 25 N -0.60 -6.98 2.20 -164.84 -0.36 -7.35 16 26 C 0.11 0.99 6.81 -3.12 -0.02 0.97 16 27 C -0.13 -0.91 7.18 -25.10 -0.18 -1.09 16 28 C -0.16 -1.37 6.86 -26.74 -0.18 -1.55 16 29 C 0.51 6.51 7.40 -10.86 -0.08 6.43 16 30 O -0.54 -8.51 15.07 5.55 0.08 -8.42 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.85 6.82 -51.93 -0.35 0.50 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.11 1.51 6.34 -51.93 -0.33 1.18 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.07 1.38 7.44 -51.93 -0.39 0.99 16 38 H 0.05 1.21 7.40 -51.93 -0.38 0.83 16 39 H 0.05 1.31 6.58 -51.93 -0.34 0.97 16 40 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.04 0.70 7.97 -51.93 -0.41 0.28 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.08 1.41 7.76 -51.93 -0.40 1.01 16 44 H 0.06 0.90 7.61 -51.93 -0.40 0.51 16 45 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.09 0.99 6.80 -51.93 -0.35 0.64 16 47 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 48 H 0.09 0.48 8.14 -51.92 -0.42 0.05 16 49 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 50 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 384.38 15.07 5.79 5.79 Total: -1.00 -32.73 384.38 -9.94 -42.67 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -8.39 Total: 1.18 kcal Atomic # 6 Polarization: 12.74 SS G_CDS: -1.54 Total: 11.21 kcal Atomic # 7 Polarization: -58.63 SS G_CDS: -0.95 Total: -59.58 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: 0.16 Total: -18.10 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.73 -9.94 -42.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049166961.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.001 kcal (2) G-P(sol) polarization free energy of solvation -32.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds