Wall clock time and date at job start Tue Mar 31 2020 19:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46626 * 119.99699 * 2 1 3 5 5 C 1.50709 * 109.46788 * 184.99743 * 4 2 1 6 6 O 1.21278 * 120.00020 * 0.02562 * 5 4 2 7 7 N 1.34782 * 119.99779 * 180.02562 * 5 4 2 8 8 C 1.46664 * 125.33294 * 180.02562 * 7 5 4 9 9 C 1.53730 * 107.94033 * 180.52324 * 8 7 5 10 10 H 1.08994 * 112.56650 * 139.71634 * 9 8 7 11 11 C 1.53689 * 109.34000 * 266.25240 * 9 8 7 12 12 N 1.47165 * 107.73884 * 128.69218 * 11 9 8 13 13 C 1.36933 * 125.25975 * 180.36209 * 12 11 9 14 14 H 1.07997 * 120.00479 * 179.18223 * 13 12 11 15 15 C 1.38818 * 119.99893 * 359.17537 * 13 12 11 16 16 N 1.31613 * 119.99751 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00083 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46894 * 60.00866 * 17 15 13 19 19 H 1.48497 * 109.46893 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47366 * 300.00613 * 17 15 13 21 21 C 1.46747 * 109.41188 * 359.65211 * 12 11 9 22 22 C 1.53931 * 106.71838 * 342.40565 * 21 12 11 23 23 H 1.09002 * 113.01205 * 150.82853 * 22 21 12 24 24 C 1.46774 * 125.33685 * 359.69347 * 7 5 4 25 25 N 1.46492 * 109.47363 * 239.99860 * 2 1 3 26 26 C 1.46766 * 124.35124 * 119.99981 * 25 2 1 27 27 C 1.54479 * 105.47402 * 197.02033 * 26 25 2 28 28 C 1.54632 * 101.76575 * 334.58318 * 27 26 25 29 29 C 1.34424 * 124.35190 * 299.70718 * 25 2 1 30 30 O 1.21286 * 124.93953 * 359.56164 * 29 25 2 31 31 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 32 32 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 34 34 H 1.08993 * 109.47768 * 305.00075 * 4 2 1 35 35 H 1.09005 * 109.47260 * 65.00844 * 4 2 1 36 36 H 1.09001 * 109.76881 * 300.13696 * 8 7 5 37 37 H 1.08996 * 109.77664 * 60.90374 * 8 7 5 38 38 H 1.09005 * 109.75772 * 247.19942 * 11 9 8 39 39 H 1.09002 * 109.76197 * 7.90589 * 11 9 8 40 40 H 0.97005 * 119.99892 * 179.97438 * 16 15 13 41 41 H 1.08997 * 110.01199 * 223.09416 * 21 12 11 42 42 H 1.09004 * 110.01086 * 101.71456 * 21 12 11 43 43 H 1.08994 * 110.02906 * 280.79658 * 24 7 5 44 44 H 1.09000 * 110.02602 * 42.22143 * 24 7 5 45 45 H 1.09001 * 110.24530 * 316.01812 * 26 25 2 46 46 H 1.08998 * 110.24646 * 78.01838 * 26 25 2 47 47 H 1.08998 * 110.97178 * 92.70381 * 27 26 25 48 48 H 1.09008 * 110.96608 * 216.46583 * 27 26 25 49 49 H 1.08998 * 110.48569 * 143.47577 * 28 27 26 50 50 H 1.09000 * 110.48360 * 265.99245 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5419 -0.6149 1.3128 6 8 4.1450 -0.0205 0.4446 7 7 4.2149 -1.1805 2.3344 8 6 5.6704 -1.1487 2.5123 9 6 6.0077 -1.9246 3.7959 10 1 6.9000 -2.5413 3.6896 11 6 6.0909 -0.9439 4.9763 12 7 5.2351 -1.4657 6.0539 13 6 5.0414 -0.8665 7.2698 14 1 4.3822 -1.3188 7.9959 15 6 5.6927 0.3223 7.5693 16 7 6.4958 0.8737 6.6844 17 14 5.4280 1.1401 9.2278 18 1 5.8539 0.2156 10.3091 19 1 6.2303 2.3876 9.2981 20 1 3.9891 1.4673 9.3944 21 6 4.6088 -2.7185 5.6159 22 6 4.7296 -2.7614 4.0820 23 1 4.7822 -3.7759 3.6869 24 6 3.6056 -1.9189 3.4470 25 7 2.0184 -0.6906 -1.1961 26 6 2.8657 -0.0712 -2.2220 27 6 2.7610 -0.9950 -3.4558 28 6 2.4039 -2.3514 -2.8047 29 6 1.7528 -1.9746 -1.4922 30 8 1.0860 -2.7217 -0.8078 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.6053 -0.2617 2.1370 35 1 1.7517 -1.7715 1.2056 36 1 6.1566 -1.6201 1.6581 37 1 6.0080 -0.1166 2.6058 38 1 7.1182 -0.8869 5.3363 39 1 5.7562 0.0438 4.6592 40 1 6.9506 1.7046 6.8935 41 1 3.5588 -2.7325 5.9078 42 1 5.1299 -3.5694 6.0550 43 1 3.1988 -1.2217 4.1794 44 1 2.8165 -2.5718 3.0739 45 1 2.4968 0.9253 -2.4646 46 1 3.8983 -0.0184 -1.8770 47 1 1.9677 -0.6630 -4.1255 48 1 3.7142 -1.0534 -3.9813 49 1 1.7074 -2.9051 -3.4342 50 1 3.3052 -2.9381 -2.6268 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049166961.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:21 Heat of formation + Delta-G solvation = -57.417409 kcal Electronic energy + Delta-G solvation = -30587.411548 eV Core-core repulsion = 26614.301103 eV Total energy + Delta-G solvation = -3973.110445 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.83737 -41.18337 -39.57426 -37.35316 -36.55486 -35.80100 -34.12088 -32.20135 -31.11368 -30.93525 -29.17221 -28.37796 -27.15417 -27.02380 -24.65027 -23.44557 -22.74091 -21.86208 -20.85651 -20.63554 -19.63542 -18.86748 -18.16770 -17.87017 -17.40891 -17.26472 -16.68441 -16.45772 -15.96639 -15.76996 -15.52017 -15.07310 -14.75975 -14.66167 -14.60312 -14.36317 -14.33306 -13.83564 -13.69192 -13.56042 -13.40749 -13.28326 -13.10127 -12.97190 -12.91959 -12.74293 -12.68082 -12.66507 -12.41924 -12.07849 -12.03025 -11.90109 -11.87123 -11.79962 -11.54662 -11.37714 -10.89267 -10.67424 -10.59558 -9.66545 -9.61880 -8.87869 -7.84985 -5.19938 1.45454 1.48136 1.54388 1.58060 1.62651 1.98061 2.10867 2.49542 3.25571 3.33177 3.45179 3.52395 3.66438 3.66564 3.80810 3.83289 3.93863 4.07924 4.10108 4.23940 4.25222 4.28288 4.35620 4.46402 4.49299 4.52384 4.63507 4.67183 4.71139 4.75666 4.82114 4.83828 4.88974 4.91734 4.93007 5.02420 5.07106 5.08103 5.21435 5.23550 5.30812 5.36297 5.47986 5.62507 5.68567 5.76305 6.20312 6.27044 6.50558 7.09557 7.10763 7.22825 7.79607 8.41650 9.24909 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019780 B = 0.002829 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.197096 B = 9893.730357 C =10080.064670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.168 3.832 3 H 0.095 0.905 4 C -0.148 4.148 5 C 0.524 3.476 6 O -0.567 6.567 7 N -0.613 5.613 8 C 0.129 3.871 9 C -0.113 4.113 10 H 0.112 0.888 11 C 0.201 3.799 12 N -0.624 5.624 13 C -0.240 4.240 14 H 0.085 0.915 15 C -0.066 4.066 16 N -0.951 5.951 17 Si 0.976 3.024 18 H -0.276 1.276 19 H -0.298 1.298 20 H -0.277 1.277 21 C 0.141 3.859 22 C -0.095 4.095 23 H 0.128 0.872 24 C 0.117 3.883 25 N -0.603 5.603 26 C 0.100 3.900 27 C -0.118 4.118 28 C -0.153 4.153 29 C 0.501 3.499 30 O -0.578 6.578 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.084 0.916 34 H 0.114 0.886 35 H 0.101 0.899 36 H 0.074 0.926 37 H 0.043 0.957 38 H 0.006 0.994 39 H 0.009 0.991 40 H 0.245 0.755 41 H 0.047 0.953 42 H 0.031 0.969 43 H 0.053 0.947 44 H 0.095 0.905 45 H 0.088 0.912 46 H 0.064 0.936 47 H 0.097 0.903 48 H 0.107 0.893 49 H 0.113 0.887 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.536 -5.307 -20.385 23.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.065 3.935 3 H 0.113 0.887 4 C -0.189 4.189 5 C 0.314 3.686 6 O -0.447 6.447 7 N -0.346 5.346 8 C 0.006 3.994 9 C -0.133 4.133 10 H 0.130 0.870 11 C 0.076 3.924 12 N -0.350 5.350 13 C -0.369 4.369 14 H 0.103 0.897 15 C -0.259 4.259 16 N -0.600 5.600 17 Si 0.805 3.195 18 H -0.202 1.202 19 H -0.224 1.224 20 H -0.203 1.203 21 C 0.015 3.985 22 C -0.114 4.114 23 H 0.146 0.854 24 C -0.006 4.006 25 N -0.335 5.335 26 C -0.023 4.023 27 C -0.155 4.155 28 C -0.192 4.192 29 C 0.291 3.709 30 O -0.459 6.459 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.102 0.898 34 H 0.133 0.867 35 H 0.120 0.880 36 H 0.092 0.908 37 H 0.061 0.939 38 H 0.024 0.976 39 H 0.027 0.973 40 H 0.054 0.946 41 H 0.065 0.935 42 H 0.049 0.951 43 H 0.071 0.929 44 H 0.113 0.887 45 H 0.106 0.894 46 H 0.082 0.918 47 H 0.116 0.884 48 H 0.125 0.875 49 H 0.131 0.869 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -9.560 -5.107 -20.373 23.077 hybrid contribution 0.443 0.916 1.474 1.791 sum -9.117 -4.190 -18.900 21.398 Atomic orbital electron populations 1.22082 0.92742 1.02888 1.03631 1.20743 0.94754 0.96049 0.81941 0.88667 1.22142 0.90487 1.04860 1.01362 1.20708 0.90651 0.77474 0.79772 1.90592 1.71101 1.43868 1.39163 1.48387 1.07786 1.54323 1.24073 1.21615 0.81006 0.99513 0.97279 1.23007 0.99414 0.97056 0.93786 0.86950 1.20830 0.93121 0.92831 0.85659 1.44637 1.53051 1.23841 1.13511 1.19413 1.22398 1.03502 0.91540 0.89720 1.25625 0.99719 0.98899 1.01688 1.70188 1.34021 1.20358 1.35480 0.85184 0.77432 0.77353 0.79568 1.20210 1.22444 1.20305 1.21350 0.96707 0.88354 0.92044 1.22963 0.93243 0.99712 0.95497 0.85372 1.22066 0.96471 0.94376 0.87680 1.48394 1.50001 1.12082 1.23001 1.22250 0.94988 0.97968 0.87048 1.22621 1.04838 0.91997 0.96067 1.22362 1.02758 1.00193 0.93932 1.21539 0.79337 0.81560 0.88481 1.90648 1.42273 1.55495 1.57453 0.91042 0.92652 0.89751 0.86747 0.88041 0.90801 0.93877 0.97566 0.97321 0.94620 0.93516 0.95092 0.92868 0.88729 0.89376 0.91803 0.88403 0.87501 0.86912 0.87858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 9.20 71.98 0.66 -2.23 16 2 C 0.17 3.77 2.43 44.99 0.11 3.88 16 3 H 0.10 2.13 7.88 -2.39 -0.02 2.11 16 4 C -0.15 -3.79 4.16 29.85 0.12 -3.66 16 5 C 0.52 16.73 7.70 87.66 0.67 17.41 16 6 O -0.57 -20.08 13.96 -3.02 -0.04 -20.12 16 7 N -0.61 -20.15 3.31 -817.02 -2.71 -22.86 16 8 C 0.13 4.46 6.23 86.59 0.54 5.00 16 9 C -0.11 -3.99 4.01 -9.48 -0.04 -4.03 16 10 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 11 C 0.20 9.74 4.77 86.48 0.41 10.15 16 12 N -0.62 -30.97 3.39 -696.52 -2.36 -33.33 16 13 C -0.24 -13.16 10.25 84.04 0.86 -12.30 16 14 H 0.09 4.41 7.83 -2.91 -0.02 4.38 16 15 C -0.07 -3.76 5.48 84.86 0.47 -3.30 16 16 N -0.95 -57.46 10.24 21.65 0.22 -57.24 16 17 Si 0.98 45.70 29.55 68.60 2.03 47.73 16 18 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 19 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 20 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 21 C 0.14 5.28 6.41 86.65 0.56 5.84 16 22 C -0.09 -2.89 4.14 -9.26 -0.04 -2.93 16 23 H 0.13 3.03 8.14 -2.39 -0.02 3.01 16 24 C 0.12 3.55 5.87 86.72 0.51 4.06 16 25 N -0.60 -13.31 2.20 -794.03 -1.75 -15.06 16 26 C 0.10 1.72 6.81 86.83 0.59 2.31 16 27 C -0.12 -1.28 7.18 31.65 0.23 -1.05 16 28 C -0.15 -2.36 6.86 30.59 0.21 -2.15 16 29 C 0.50 12.08 7.40 87.90 0.65 12.73 16 30 O -0.58 -17.90 15.07 -3.05 -0.05 -17.94 16 31 H 0.07 1.15 8.14 -2.39 -0.02 1.14 16 32 H 0.05 1.25 6.82 -2.39 -0.02 1.23 16 33 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 35 H 0.10 2.77 6.34 -2.38 -0.02 2.76 16 36 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.04 1.73 7.44 -2.39 -0.02 1.71 16 38 H 0.01 0.34 7.40 -2.38 -0.02 0.32 16 39 H 0.01 0.49 6.58 -2.39 -0.02 0.47 16 40 H 0.24 14.53 8.31 -92.70 -0.77 13.76 16 41 H 0.05 1.67 7.97 -2.39 -0.02 1.66 16 42 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 43 H 0.05 1.90 7.76 -2.39 -0.02 1.88 16 44 H 0.09 2.35 7.61 -2.39 -0.02 2.33 16 45 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.06 1.41 6.80 -2.39 -0.02 1.40 16 47 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.11 0.80 8.14 -2.38 -0.02 0.79 16 49 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 50 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -74.30 384.38 2.78 -71.52 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 0.92 Total: 17.59 kcal Atomic # 6 Polarization: 23.21 SS G_CDS: 6.52 Total: 29.72 kcal Atomic # 7 Polarization: -121.91 SS G_CDS: -6.59 Total: -128.50 kcal Atomic # 8 Polarization: -37.97 SS G_CDS: -0.09 Total: -38.06 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -74.30 2.78 -71.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049166961.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.098 kcal (2) G-P(sol) polarization free energy of solvation -74.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds