Wall clock time and date at job start Tue Mar 31 2020 19:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46424 * 2 1 4 4 C 1.50699 * 109.46936 * 119.99750 * 2 1 3 5 5 O 1.21286 * 119.99731 * 111.32334 * 4 2 1 6 6 N 1.34773 * 120.00528 * 291.32460 * 4 2 1 7 7 C 1.47673 * 134.45143 * 5.57947 * 6 4 2 8 8 C 1.53515 * 85.97689 * 204.31828 * 7 6 4 9 9 C 1.47664 * 134.46118 * 185.58680 * 6 4 2 10 10 C 1.52669 * 113.57147 * 91.02059 * 8 7 6 11 11 C 1.53340 * 109.11089 * 73.80663 * 10 8 7 12 12 N 1.46873 * 108.76108 * 52.40673 * 11 10 8 13 13 C 1.36934 * 120.47059 * 124.48864 * 12 11 10 14 14 H 1.07998 * 120.00551 * 212.50324 * 13 12 11 15 15 C 1.38813 * 119.99725 * 32.49362 * 13 12 11 16 16 N 1.31621 * 119.99888 * 11.12216 * 15 13 12 17 17 Si 1.86801 * 119.99989 * 191.11938 * 15 13 12 18 18 H 1.48496 * 109.47090 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47016 * 120.00296 * 17 15 13 20 20 H 1.48503 * 109.47544 * 240.00137 * 17 15 13 21 21 C 1.46897 * 119.06659 * 304.46204 * 12 11 10 22 22 C 1.52670 * 113.56363 * 222.23474 * 8 7 6 23 23 C 1.52994 * 109.47251 * 240.00042 * 2 1 3 24 24 H 1.09002 * 110.21716 * 298.06818 * 23 2 1 25 25 C 1.54486 * 110.24636 * 59.99870 * 23 2 1 26 26 C 1.54627 * 101.76411 * 93.58659 * 25 23 2 27 27 C 1.51280 * 104.19593 * 24.79665 * 26 25 23 28 28 O 1.21284 * 124.93898 * 163.78963 * 27 26 25 29 29 N 1.34414 * 110.11832 * 343.74663 * 27 26 25 30 30 H 1.09001 * 109.46958 * 183.91746 * 1 2 3 31 31 H 1.08998 * 109.47440 * 303.91346 * 1 2 3 32 32 H 1.08997 * 109.47243 * 63.92179 * 1 2 3 33 33 H 1.08996 * 113.78645 * 90.05811 * 7 6 4 34 34 H 1.08993 * 113.90064 * 318.59763 * 7 6 4 35 35 H 1.09001 * 113.79213 * 41.40995 * 9 6 4 36 36 H 1.09003 * 113.78805 * 269.94996 * 9 6 4 37 37 H 1.08997 * 109.53256 * 193.69985 * 10 8 7 38 38 H 1.09000 * 109.52967 * 313.91324 * 10 8 7 39 39 H 1.08994 * 109.58772 * 172.19593 * 11 10 8 40 40 H 1.09007 * 109.58477 * 292.62659 * 11 10 8 41 41 H 0.97009 * 119.99618 * 179.97438 * 16 15 13 42 42 H 1.08991 * 109.59113 * 295.76900 * 21 12 11 43 43 H 1.08998 * 109.58984 * 175.32231 * 21 12 11 44 44 H 1.09001 * 109.53261 * 46.09082 * 22 8 7 45 45 H 1.08994 * 109.53617 * 166.23704 * 22 8 7 46 46 H 1.09001 * 110.96989 * 211.70337 * 25 23 2 47 47 H 1.08998 * 110.96910 * 335.46145 * 25 23 2 48 48 H 1.08993 * 110.48740 * 143.47927 * 26 25 23 49 49 H 1.09001 * 110.48288 * 265.99006 * 26 25 23 50 50 H 0.96998 * 124.35375 * 179.61234 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.5945 -1.7800 1.1262 6 7 1.8568 -0.1572 2.4469 7 6 1.1494 1.0388 2.9468 8 6 2.1252 0.9881 4.1308 9 6 2.2948 -0.5040 3.8138 10 6 3.3942 1.8081 3.9115 11 6 3.0561 3.2988 4.0341 12 7 2.3537 3.5210 5.3046 13 6 2.8261 4.4345 6.2088 14 1 2.6929 4.2655 7.2671 15 6 3.4764 5.5777 5.7650 16 7 3.4494 5.8965 4.4882 17 14 4.3898 6.6638 6.9797 18 1 4.2701 6.0898 8.3440 19 1 5.8230 6.7370 6.5979 20 1 3.8028 8.0278 6.9629 21 6 1.1368 2.7498 5.5917 22 6 1.4624 1.2555 5.4798 23 6 2.0400 -0.7212 -1.2492 24 1 1.7118 -1.7606 -1.2444 25 6 1.5350 -0.0070 -2.5225 26 6 2.7105 0.9474 -2.8360 27 6 3.9087 0.2834 -2.1941 28 8 5.0657 0.5540 -2.4370 29 7 3.5044 -0.6494 -1.3148 30 1 -0.3633 -1.0253 0.0702 31 1 -0.3634 0.5734 0.8528 32 1 -0.3633 0.4517 -0.9230 33 1 0.1119 0.8521 3.2238 34 1 1.2695 1.9190 2.3153 35 1 3.3266 -0.8510 3.8701 36 1 1.5976 -1.1492 4.3484 37 1 4.1360 1.5397 4.6636 38 1 3.7920 1.6052 2.9172 39 1 3.9752 3.8845 4.0172 40 1 2.4147 3.5973 3.2048 41 1 3.9036 6.6956 4.1782 42 1 0.3611 3.0097 4.8716 43 1 0.7916 2.9740 6.6010 44 1 0.5426 0.6756 5.5553 45 1 2.1412 0.9682 6.2827 46 1 1.3828 -0.7182 -3.3344 47 1 0.6217 0.5524 -2.3198 48 1 2.8542 1.0348 -3.9129 49 1 2.5336 1.9282 -2.3948 50 1 4.1035 -1.2037 -0.7907 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050676351.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:14 Heat of formation + Delta-G solvation = -21.513453 kcal Electronic energy + Delta-G solvation = -30550.196381 eV Core-core repulsion = 26578.642848 eV Total energy + Delta-G solvation = -3971.553533 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.12011 -40.33252 -38.50379 -36.74879 -35.84988 -33.40652 -32.43363 -31.41462 -30.34715 -30.01911 -27.42640 -26.86280 -26.19819 -24.82177 -23.86483 -22.41197 -21.37187 -20.61914 -20.56325 -19.09039 -18.15313 -17.74634 -16.95784 -16.70001 -16.31632 -15.77460 -15.31258 -15.26510 -14.90727 -14.20928 -14.01684 -13.91992 -13.81031 -13.66046 -13.53615 -13.42943 -13.24564 -13.01342 -12.78424 -12.52286 -12.18052 -12.08787 -11.91364 -11.83712 -11.75899 -11.48397 -11.42367 -11.11908 -11.02869 -10.80329 -10.51078 -10.34333 -10.23200 -9.95958 -9.94883 -9.78310 -9.65225 -9.42275 -9.21231 -8.61394 -8.52209 -6.65490 -5.83603 -3.32728 2.50368 2.60760 2.81590 3.26375 3.33869 3.42155 3.43530 3.99848 4.19620 4.29316 4.43388 4.44852 4.58548 4.68762 4.84853 4.94907 4.98007 5.09126 5.15032 5.23407 5.32311 5.36515 5.42360 5.43560 5.47861 5.53918 5.55122 5.58788 5.60853 5.72623 5.74623 5.84255 5.88860 5.96993 6.06297 6.21755 6.39104 6.54615 6.56738 6.60850 6.71398 6.76167 6.88027 6.98507 7.28628 7.61623 7.75421 7.76006 8.12420 8.18261 8.44091 9.17816 9.79043 10.36506 11.24147 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013780 B = 0.003182 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.379799 B = 8797.460227 C = 9901.682928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.122 4.122 3 H 0.101 0.899 4 C 0.542 3.458 5 O -0.554 6.554 6 N -0.635 5.635 7 C 0.108 3.892 8 C -0.073 4.073 9 C 0.109 3.891 10 C -0.117 4.117 11 C 0.175 3.825 12 N -0.590 5.590 13 C -0.255 4.255 14 H 0.064 0.936 15 C 0.006 3.994 16 N -0.903 5.903 17 Si 0.902 3.098 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.289 1.289 21 C 0.147 3.853 22 C -0.120 4.120 23 C 0.151 3.849 24 H 0.097 0.903 25 C -0.132 4.132 26 C -0.159 4.159 27 C 0.516 3.484 28 O -0.538 6.538 29 N -0.719 5.719 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.061 0.939 38 H 0.048 0.952 39 H 0.089 0.911 40 H 0.017 0.983 41 H 0.254 0.746 42 H 0.018 0.982 43 H 0.055 0.945 44 H 0.054 0.946 45 H 0.065 0.935 46 H 0.086 0.914 47 H 0.098 0.902 48 H 0.102 0.898 49 H 0.106 0.894 50 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.888 -12.729 -10.503 19.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.144 4.144 3 H 0.119 0.881 4 C 0.332 3.668 5 O -0.433 6.433 6 N -0.369 5.369 7 C -0.014 4.014 8 C -0.074 4.074 9 C -0.013 4.013 10 C -0.156 4.156 11 C 0.049 3.951 12 N -0.313 5.313 13 C -0.385 4.385 14 H 0.082 0.918 15 C -0.192 4.192 16 N -0.547 5.547 17 Si 0.732 3.268 18 H -0.202 1.202 19 H -0.216 1.216 20 H -0.216 1.216 21 C 0.021 3.979 22 C -0.160 4.160 23 C 0.045 3.955 24 H 0.115 0.885 25 C -0.170 4.170 26 C -0.199 4.199 27 C 0.302 3.698 28 O -0.415 6.415 29 N -0.374 5.374 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.107 0.893 40 H 0.035 0.965 41 H 0.064 0.936 42 H 0.036 0.964 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.083 0.917 46 H 0.105 0.895 47 H 0.116 0.884 48 H 0.120 0.880 49 H 0.124 0.876 50 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -8.939 -13.011 -11.031 19.258 hybrid contribution 0.643 0.362 0.915 1.176 sum -8.297 -12.649 -10.115 18.197 Atomic orbital electron populations 1.21825 0.91866 1.03046 1.03475 1.21738 0.98193 1.01571 0.92896 0.88133 1.20104 0.78894 0.84533 0.83291 1.90656 1.44598 1.21811 1.86196 1.50027 1.52992 1.28327 1.05530 1.23387 0.96561 0.87216 0.94224 1.21997 0.97068 0.93274 0.95027 1.23383 1.00557 0.97543 0.79836 1.21982 0.94258 0.99490 0.99914 1.20759 0.98195 0.89183 0.86984 1.43971 1.24342 1.44165 1.18817 1.19204 1.33123 0.97769 0.88390 0.91846 1.25172 1.01459 0.96517 0.96094 1.69971 1.45447 1.25930 1.13385 0.86226 0.79450 0.80398 0.80704 1.20215 1.21552 1.21616 1.20892 0.89535 0.88817 0.98680 1.21971 0.98956 0.99897 0.95188 1.21404 0.80287 1.00720 0.93125 0.88532 1.22789 0.98703 0.98770 0.96710 1.22369 0.93739 1.00529 1.03251 1.20946 0.90017 0.79471 0.79373 1.90763 1.20674 1.65290 1.64725 1.46327 1.08013 1.39758 1.43296 0.91851 0.91336 0.90661 0.89794 0.89710 0.90467 0.90199 0.92060 0.93286 0.89273 0.96507 0.93605 0.96418 0.92633 0.92751 0.91670 0.89501 0.88414 0.87995 0.87568 0.74477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 8.93 37.16 0.33 -0.69 16 2 C -0.12 -1.18 2.28 -91.77 -0.21 -1.39 16 3 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 4 C 0.54 7.24 7.11 -10.99 -0.08 7.16 16 5 O -0.55 -8.90 15.86 5.55 0.09 -8.82 16 6 N -0.63 -8.38 3.44 -180.20 -0.62 -9.00 16 7 C 0.11 1.37 6.19 -3.14 -0.02 1.35 16 8 C -0.07 -1.06 0.77 -154.42 -0.12 -1.18 16 9 C 0.11 1.45 7.97 -3.16 -0.03 1.42 16 10 C -0.12 -2.10 5.22 -26.72 -0.14 -2.24 16 11 C 0.17 3.87 5.16 -3.66 -0.02 3.86 16 12 N -0.59 -13.73 2.95 -172.21 -0.51 -14.23 16 13 C -0.26 -6.68 9.55 -15.06 -0.14 -6.82 16 14 H 0.06 1.64 7.85 -52.49 -0.41 1.23 16 15 C 0.01 0.17 5.03 -17.43 -0.09 0.09 16 16 N -0.90 -25.32 11.11 55.49 0.62 -24.71 16 17 Si 0.90 21.15 29.57 -169.99 -5.03 16.13 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 C 0.15 2.75 6.39 -3.65 -0.02 2.72 16 22 C -0.12 -1.78 5.26 -26.72 -0.14 -1.92 16 23 C 0.15 1.35 2.55 -67.01 -0.17 1.18 16 24 H 0.10 0.86 7.96 -51.93 -0.41 0.45 16 25 C -0.13 -0.81 6.52 -25.10 -0.16 -0.97 16 26 C -0.16 -1.32 6.86 -26.74 -0.18 -1.51 16 27 C 0.52 6.71 8.43 -10.86 -0.09 6.62 16 28 O -0.54 -9.49 18.03 5.55 0.10 -9.39 16 29 N -0.72 -8.48 5.44 -52.76 -0.29 -8.76 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.51 6.95 -51.93 -0.36 0.15 16 32 H 0.07 0.36 5.98 -51.93 -0.31 0.05 16 33 H 0.08 0.90 8.07 -51.93 -0.42 0.48 16 34 H 0.08 1.13 7.41 -51.93 -0.38 0.74 16 35 H 0.08 1.09 8.09 -51.93 -0.42 0.67 16 36 H 0.08 0.93 8.09 -51.93 -0.42 0.51 16 37 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.05 0.87 8.01 -51.93 -0.42 0.45 16 39 H 0.09 2.31 6.08 -51.93 -0.32 1.99 16 40 H 0.02 0.39 7.49 -51.92 -0.39 0.00 16 41 H 0.25 6.92 8.31 -40.82 -0.34 6.59 16 42 H 0.02 0.33 8.07 -51.93 -0.42 -0.09 16 43 H 0.06 1.04 7.92 -51.93 -0.41 0.62 16 44 H 0.05 0.66 8.12 -51.93 -0.42 0.24 16 45 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 46 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.10 0.41 5.77 -51.93 -0.30 0.11 16 48 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 50 H 0.42 5.43 8.31 -40.82 -0.34 5.09 16 LS Contribution 387.41 15.07 5.84 5.84 Total: -1.00 -32.84 387.41 -9.33 -42.17 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -8.25 Total: 3.11 kcal Atomic # 6 Polarization: 8.96 SS G_CDS: -1.28 Total: 7.68 kcal Atomic # 7 Polarization: -55.91 SS G_CDS: -0.80 Total: -56.71 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: 0.19 Total: -18.21 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.13 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.84 -9.33 -42.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050676351.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.653 kcal (2) G-P(sol) polarization free energy of solvation -32.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds