Wall clock time and date at job start Tue Mar 31 2020 19:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46424 * 2 1 4 4 C 1.50699 * 109.46936 * 119.99750 * 2 1 3 5 5 O 1.21286 * 119.99731 * 111.32334 * 4 2 1 6 6 N 1.34773 * 120.00528 * 291.32460 * 4 2 1 7 7 C 1.47673 * 134.45143 * 5.57947 * 6 4 2 8 8 C 1.53515 * 85.97689 * 204.31828 * 7 6 4 9 9 C 1.47664 * 134.46118 * 185.58680 * 6 4 2 10 10 C 1.52669 * 113.57147 * 91.02059 * 8 7 6 11 11 C 1.53340 * 109.11089 * 73.80663 * 10 8 7 12 12 N 1.46873 * 108.76108 * 52.40673 * 11 10 8 13 13 C 1.36934 * 120.47059 * 124.48864 * 12 11 10 14 14 H 1.07998 * 120.00551 * 212.50324 * 13 12 11 15 15 C 1.38813 * 119.99725 * 32.49362 * 13 12 11 16 16 N 1.31621 * 119.99888 * 11.12216 * 15 13 12 17 17 Si 1.86801 * 119.99989 * 191.11938 * 15 13 12 18 18 H 1.48496 * 109.47090 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47016 * 120.00296 * 17 15 13 20 20 H 1.48503 * 109.47544 * 240.00137 * 17 15 13 21 21 C 1.46897 * 119.06659 * 304.46204 * 12 11 10 22 22 C 1.52670 * 113.56363 * 222.23474 * 8 7 6 23 23 C 1.52994 * 109.47251 * 240.00042 * 2 1 3 24 24 H 1.09002 * 110.21716 * 298.06818 * 23 2 1 25 25 C 1.54486 * 110.24636 * 59.99870 * 23 2 1 26 26 C 1.54627 * 101.76411 * 93.58659 * 25 23 2 27 27 C 1.51280 * 104.19593 * 24.79665 * 26 25 23 28 28 O 1.21284 * 124.93898 * 163.78963 * 27 26 25 29 29 N 1.34414 * 110.11832 * 343.74663 * 27 26 25 30 30 H 1.09001 * 109.46958 * 183.91746 * 1 2 3 31 31 H 1.08998 * 109.47440 * 303.91346 * 1 2 3 32 32 H 1.08997 * 109.47243 * 63.92179 * 1 2 3 33 33 H 1.08996 * 113.78645 * 90.05811 * 7 6 4 34 34 H 1.08993 * 113.90064 * 318.59763 * 7 6 4 35 35 H 1.09001 * 113.79213 * 41.40995 * 9 6 4 36 36 H 1.09003 * 113.78805 * 269.94996 * 9 6 4 37 37 H 1.08997 * 109.53256 * 193.69985 * 10 8 7 38 38 H 1.09000 * 109.52967 * 313.91324 * 10 8 7 39 39 H 1.08994 * 109.58772 * 172.19593 * 11 10 8 40 40 H 1.09007 * 109.58477 * 292.62659 * 11 10 8 41 41 H 0.97009 * 119.99618 * 179.97438 * 16 15 13 42 42 H 1.08991 * 109.59113 * 295.76900 * 21 12 11 43 43 H 1.08998 * 109.58984 * 175.32231 * 21 12 11 44 44 H 1.09001 * 109.53261 * 46.09082 * 22 8 7 45 45 H 1.08994 * 109.53617 * 166.23704 * 22 8 7 46 46 H 1.09001 * 110.96989 * 211.70337 * 25 23 2 47 47 H 1.08998 * 110.96910 * 335.46145 * 25 23 2 48 48 H 1.08993 * 110.48740 * 143.47927 * 26 25 23 49 49 H 1.09001 * 110.48288 * 265.99006 * 26 25 23 50 50 H 0.96998 * 124.35375 * 179.61234 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.5945 -1.7800 1.1262 6 7 1.8568 -0.1572 2.4469 7 6 1.1494 1.0388 2.9468 8 6 2.1252 0.9881 4.1308 9 6 2.2948 -0.5040 3.8138 10 6 3.3942 1.8081 3.9115 11 6 3.0561 3.2988 4.0341 12 7 2.3537 3.5210 5.3046 13 6 2.8261 4.4345 6.2088 14 1 2.6929 4.2655 7.2671 15 6 3.4764 5.5777 5.7650 16 7 3.4494 5.8965 4.4882 17 14 4.3898 6.6638 6.9797 18 1 4.2701 6.0898 8.3440 19 1 5.8230 6.7370 6.5979 20 1 3.8028 8.0278 6.9629 21 6 1.1368 2.7498 5.5917 22 6 1.4624 1.2555 5.4798 23 6 2.0400 -0.7212 -1.2492 24 1 1.7118 -1.7606 -1.2444 25 6 1.5350 -0.0070 -2.5225 26 6 2.7105 0.9474 -2.8360 27 6 3.9087 0.2834 -2.1941 28 8 5.0657 0.5540 -2.4370 29 7 3.5044 -0.6494 -1.3148 30 1 -0.3633 -1.0253 0.0702 31 1 -0.3634 0.5734 0.8528 32 1 -0.3633 0.4517 -0.9230 33 1 0.1119 0.8521 3.2238 34 1 1.2695 1.9190 2.3153 35 1 3.3266 -0.8510 3.8701 36 1 1.5976 -1.1492 4.3484 37 1 4.1360 1.5397 4.6636 38 1 3.7920 1.6052 2.9172 39 1 3.9752 3.8845 4.0172 40 1 2.4147 3.5973 3.2048 41 1 3.9036 6.6956 4.1782 42 1 0.3611 3.0097 4.8716 43 1 0.7916 2.9740 6.6010 44 1 0.5426 0.6756 5.5553 45 1 2.1412 0.9682 6.2827 46 1 1.3828 -0.7182 -3.3344 47 1 0.6217 0.5524 -2.3198 48 1 2.8542 1.0348 -3.9129 49 1 2.5336 1.9282 -2.3948 50 1 4.1035 -1.2037 -0.7907 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050676351.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:13 Heat of formation + Delta-G solvation = -43.933228 kcal Electronic energy + Delta-G solvation = -30551.168576 eV Core-core repulsion = 26578.642848 eV Total energy + Delta-G solvation = -3972.525727 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.10891 -41.35819 -39.64579 -37.83090 -37.35736 -34.45923 -33.94492 -32.16001 -31.85719 -31.58266 -28.71250 -27.67256 -27.22490 -26.19134 -24.98454 -23.93613 -22.62826 -21.65961 -21.47953 -20.12867 -19.57378 -18.68587 -18.29420 -17.86302 -17.39677 -16.96061 -16.69344 -16.28874 -16.23719 -15.65192 -15.34748 -15.14366 -14.99112 -14.77790 -14.67728 -14.48713 -14.20167 -13.94177 -13.91328 -13.71304 -13.35092 -13.11482 -13.08107 -12.94788 -12.78297 -12.70710 -12.60051 -12.45536 -12.20877 -12.15940 -12.00457 -11.82596 -11.74524 -11.37413 -11.27801 -11.18699 -10.97212 -10.59465 -10.52617 -10.16661 -9.67731 -8.56150 -7.84988 -5.35766 1.45289 1.48364 1.51824 1.57206 1.60672 1.82987 2.39116 2.51497 3.19358 3.28525 3.43903 3.48614 3.62651 3.68226 3.76420 3.87760 4.04463 4.08847 4.18348 4.21254 4.28159 4.37094 4.46880 4.53572 4.59327 4.62278 4.70863 4.74248 4.74794 4.81279 4.87916 4.89982 4.92700 4.98939 5.07911 5.11194 5.12323 5.18808 5.27196 5.32704 5.38701 5.42968 5.57360 5.67943 5.78394 5.79199 6.04788 6.45169 6.73166 7.09925 7.17694 7.19663 7.91090 8.41581 9.19783 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013780 B = 0.003182 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.379799 B = 8797.460227 C = 9901.682928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.116 4.116 3 H 0.095 0.905 4 C 0.533 3.467 5 O -0.587 6.587 6 N -0.638 5.638 7 C 0.119 3.881 8 C -0.077 4.077 9 C 0.114 3.886 10 C -0.102 4.102 11 C 0.186 3.814 12 N -0.609 5.609 13 C -0.259 4.259 14 H 0.064 0.936 15 C -0.046 4.046 16 N -0.934 5.934 17 Si 0.960 3.040 18 H -0.266 1.266 19 H -0.296 1.296 20 H -0.291 1.291 21 C 0.142 3.858 22 C -0.106 4.106 23 C 0.146 3.854 24 H 0.100 0.900 25 C -0.116 4.116 26 C -0.152 4.152 27 C 0.502 3.498 28 O -0.598 6.598 29 N -0.722 5.722 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.105 0.895 33 H 0.117 0.883 34 H 0.076 0.924 35 H 0.062 0.938 36 H 0.108 0.892 37 H 0.046 0.954 38 H 0.045 0.955 39 H 0.044 0.956 40 H 0.005 0.995 41 H 0.248 0.752 42 H 0.027 0.973 43 H 0.053 0.947 44 H 0.097 0.903 45 H 0.056 0.944 46 H 0.107 0.893 47 H 0.127 0.873 48 H 0.117 0.883 49 H 0.115 0.885 50 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.120 -13.931 -10.744 21.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.138 4.138 3 H 0.113 0.887 4 C 0.324 3.676 5 O -0.468 6.468 6 N -0.372 5.372 7 C -0.002 4.002 8 C -0.078 4.078 9 C -0.008 4.008 10 C -0.141 4.141 11 C 0.060 3.940 12 N -0.333 5.333 13 C -0.390 4.390 14 H 0.082 0.918 15 C -0.242 4.242 16 N -0.580 5.580 17 Si 0.789 3.211 18 H -0.190 1.190 19 H -0.223 1.223 20 H -0.218 1.218 21 C 0.017 3.983 22 C -0.145 4.145 23 C 0.041 3.959 24 H 0.118 0.882 25 C -0.153 4.153 26 C -0.192 4.192 27 C 0.290 3.710 28 O -0.480 6.480 29 N -0.374 5.374 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.123 0.877 33 H 0.135 0.865 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.126 0.874 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.023 0.977 41 H 0.057 0.943 42 H 0.045 0.955 43 H 0.072 0.928 44 H 0.115 0.885 45 H 0.075 0.925 46 H 0.126 0.874 47 H 0.146 0.854 48 H 0.135 0.865 49 H 0.133 0.867 50 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -12.244 -14.240 -11.242 21.888 hybrid contribution 1.658 0.681 1.056 2.080 sum -10.586 -13.558 -10.187 19.991 Atomic orbital electron populations 1.21861 0.89138 1.03625 1.05077 1.21782 1.00287 1.00508 0.91237 0.88733 1.20823 0.78245 0.84353 0.84150 1.90642 1.46014 1.23478 1.86677 1.50103 1.53002 1.28416 1.05655 1.23417 0.97506 0.86729 0.92581 1.21860 0.95913 0.93868 0.96143 1.23352 1.00674 0.96465 0.80318 1.21692 0.96051 0.97185 0.99199 1.20450 0.95873 0.91136 0.86532 1.44218 1.26245 1.44378 1.18437 1.19512 1.32468 0.97974 0.89050 0.91821 1.25838 1.02864 0.98042 0.97448 1.70120 1.46686 1.26246 1.14920 0.85310 0.77713 0.78683 0.79383 1.19013 1.22280 1.21772 1.21087 0.87856 0.90596 0.98737 1.21828 1.00651 0.97306 0.94741 1.21676 0.78427 1.01429 0.94409 0.88183 1.22874 0.98484 0.98442 0.95474 1.22425 0.92160 1.00884 1.03731 1.21862 0.90502 0.79384 0.79243 1.90717 1.23391 1.67168 1.66694 1.46570 1.09488 1.38929 1.42395 0.91514 0.91397 0.87692 0.86494 0.90531 0.91920 0.87416 0.93489 0.93668 0.93741 0.97684 0.94281 0.95487 0.92819 0.88491 0.92479 0.87443 0.85447 0.86478 0.86724 0.75891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 8.93 71.98 0.64 -0.76 16 2 C -0.12 -1.99 2.28 -11.54 -0.03 -2.01 16 3 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 4 C 0.53 13.46 7.11 87.66 0.62 14.09 16 5 O -0.59 -18.54 15.86 -3.05 -0.05 -18.58 16 6 N -0.64 -15.53 3.44 -842.43 -2.90 -18.43 16 7 C 0.12 2.66 6.19 86.32 0.53 3.20 16 8 C -0.08 -2.09 0.77 -52.03 -0.04 -2.13 16 9 C 0.11 2.77 7.97 86.31 0.69 3.46 16 10 C -0.10 -3.70 5.22 30.60 0.16 -3.54 16 11 C 0.19 8.50 5.16 86.42 0.45 8.95 16 12 N -0.61 -28.47 2.95 -698.74 -2.06 -30.53 16 13 C -0.26 -13.73 9.55 84.03 0.80 -12.93 16 14 H 0.06 3.30 7.85 -2.91 -0.02 3.28 16 15 C -0.05 -2.53 5.03 84.86 0.43 -2.11 16 16 N -0.93 -54.10 11.11 21.65 0.24 -53.86 16 17 Si 0.96 44.31 29.57 68.60 2.03 46.33 16 18 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 19 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 20 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 21 C 0.14 5.05 6.39 86.42 0.55 5.61 16 22 C -0.11 -2.82 5.26 30.60 0.16 -2.66 16 23 C 0.15 2.31 2.55 45.44 0.12 2.43 16 24 H 0.10 1.56 7.96 -2.39 -0.02 1.54 16 25 C -0.12 -0.98 6.52 31.65 0.21 -0.77 16 26 C -0.15 -2.23 6.86 30.59 0.21 -2.02 16 27 C 0.50 13.20 8.43 87.90 0.74 13.94 16 28 O -0.60 -22.22 18.03 -3.04 -0.05 -22.28 16 29 N -0.72 -17.08 5.44 -439.44 -2.39 -19.47 16 30 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.07 0.73 6.95 -2.39 -0.02 0.71 16 32 H 0.10 0.44 5.98 -2.39 -0.01 0.43 16 33 H 0.12 1.92 8.07 -2.39 -0.02 1.90 16 34 H 0.08 1.88 7.41 -2.39 -0.02 1.86 16 35 H 0.06 1.72 8.09 -2.39 -0.02 1.70 16 36 H 0.11 2.08 8.09 -2.39 -0.02 2.06 16 37 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.04 1.64 8.01 -2.39 -0.02 1.63 16 39 H 0.04 2.42 6.08 -2.39 -0.01 2.41 16 40 H 0.01 0.24 7.49 -2.38 -0.02 0.22 16 41 H 0.25 14.04 8.31 -92.70 -0.77 13.27 16 42 H 0.03 0.92 8.07 -2.39 -0.02 0.90 16 43 H 0.05 1.91 7.92 -2.39 -0.02 1.89 16 44 H 0.10 1.84 8.12 -2.39 -0.02 1.82 16 45 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.11 0.55 8.14 -2.39 -0.02 0.54 16 47 H 0.13 0.38 5.77 -2.39 -0.01 0.36 16 48 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 49 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 50 H 0.40 11.08 8.31 -92.71 -0.77 10.31 16 Total: -1.00 -76.55 387.41 1.23 -75.32 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: 0.17 Total: 18.78 kcal Atomic # 6 Polarization: 16.49 SS G_CDS: 6.24 Total: 22.73 kcal Atomic # 7 Polarization: -115.19 SS G_CDS: -7.11 Total: -122.30 kcal Atomic # 8 Polarization: -40.76 SS G_CDS: -0.10 Total: -40.86 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -76.55 1.23 -75.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050676351.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.384 kcal (2) G-P(sol) polarization free energy of solvation -76.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds