Wall clock time and date at job start Tue Mar 31 2020 19:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47482 * 2 1 4 4 C 1.52997 * 109.46909 * 120.00029 * 2 1 3 5 5 C 1.50704 * 109.47152 * 184.99825 * 4 2 1 6 6 O 1.21282 * 119.99841 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99896 * 179.97438 * 5 4 2 8 8 C 1.47387 * 135.85476 * 359.63396 * 7 5 4 9 9 C 1.52068 * 87.40959 * 154.38945 * 8 7 5 10 10 C 1.47394 * 135.85232 * 180.02562 * 7 5 4 11 11 C 1.53515 * 117.21331 * 267.27416 * 9 8 7 12 12 C 1.54631 * 102.70707 * 262.93383 * 11 9 8 13 13 N 1.47144 * 107.37633 * 339.38282 * 12 11 9 14 14 C 1.36937 * 125.58020 * 179.10649 * 13 12 11 15 15 H 1.08003 * 119.99509 * 179.97438 * 14 13 12 16 16 C 1.38809 * 119.99907 * 359.97438 * 14 13 12 17 17 N 1.31617 * 119.99982 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00037 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46952 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47207 * 119.99640 * 18 16 14 21 21 H 1.48498 * 109.46950 * 240.00019 * 18 16 14 22 22 C 1.47764 * 108.84024 * 359.08667 * 13 12 11 23 23 N 1.46501 * 109.47031 * 239.99583 * 2 1 3 24 24 C 1.46768 * 124.34528 * 120.00335 * 23 2 1 25 25 C 1.54479 * 105.47008 * 162.98291 * 24 23 2 26 26 C 1.54623 * 101.76734 * 25.41638 * 25 24 23 27 27 C 1.34735 * 124.30373 * 299.96431 * 23 2 1 28 28 O 1.21286 * 125.12007 * 0.42227 * 27 23 2 29 29 H 1.08997 * 109.47482 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47172 * 300.00225 * 1 2 3 31 31 H 1.09003 * 109.47081 * 59.99939 * 1 2 3 32 32 H 1.09002 * 109.47163 * 304.99867 * 4 2 1 33 33 H 1.09000 * 109.47425 * 65.00122 * 4 2 1 34 34 H 1.09008 * 113.54189 * 268.99375 * 8 7 5 35 35 H 1.08996 * 113.54366 * 39.67477 * 8 7 5 36 36 H 1.09006 * 113.53738 * 320.31933 * 10 7 5 37 37 H 1.08998 * 113.54478 * 90.92469 * 10 7 5 38 38 H 1.09001 * 110.76232 * 21.23767 * 11 9 8 39 39 H 1.09007 * 110.76612 * 144.62513 * 11 9 8 40 40 H 1.09000 * 109.86009 * 98.82921 * 12 11 9 41 41 H 1.09001 * 109.86314 * 219.93201 * 12 11 9 42 42 H 0.97000 * 119.99994 * 180.02562 * 17 16 14 43 43 H 1.08994 * 110.40551 * 263.50378 * 22 13 12 44 44 H 1.09000 * 110.40534 * 141.07677 * 22 13 12 45 45 H 1.09000 * 110.24529 * 43.98091 * 24 23 2 46 46 H 1.09007 * 110.24087 * 281.98355 * 24 23 2 47 47 H 1.08994 * 110.96846 * 267.29074 * 25 24 23 48 48 H 1.09004 * 110.96814 * 143.53721 * 25 24 23 49 49 H 1.09002 * 110.48860 * 93.88058 * 26 25 24 50 50 H 1.08998 * 110.48497 * 216.38951 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5419 -0.6150 1.3127 6 8 4.1449 -0.0204 0.4445 7 7 4.2147 -1.1797 2.3349 8 6 3.8568 -1.9493 3.5399 9 6 5.2486 -2.5591 3.4797 10 6 5.6282 -1.2906 2.7377 11 6 5.4022 -3.8841 2.7197 12 6 5.3409 -4.9350 3.8524 13 7 5.6679 -4.2450 5.1102 14 6 5.7045 -4.8242 6.3505 15 1 5.9570 -4.2303 7.2165 16 6 5.4169 -6.1745 6.4947 17 7 5.1087 -6.8980 5.4393 18 14 5.4675 -6.9648 8.1865 19 1 5.8383 -5.9436 9.1989 20 1 4.1305 -7.5229 8.5123 21 1 6.4745 -8.0561 8.1931 22 6 5.9509 -2.8249 4.8158 23 7 2.0183 -0.6907 -1.1961 24 6 2.8656 -0.0713 -2.2221 25 6 3.4724 -1.2467 -3.0200 26 6 2.4204 -2.3572 -2.7946 27 6 1.7473 -1.9764 -1.4944 28 8 1.0645 -2.7197 -0.8218 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6053 -0.2617 2.1370 33 1 1.7516 -1.7715 1.2056 34 1 3.6915 -1.3279 4.4201 35 1 3.0563 -2.6701 3.3742 36 1 6.3069 -1.4615 1.9019 37 1 5.9590 -0.4842 3.3922 38 1 4.5803 -4.0243 2.0176 39 1 6.3624 -3.9256 2.2055 40 1 4.3378 -5.3575 3.9117 41 1 6.0673 -5.7255 3.6639 42 1 4.9074 -7.8415 5.5401 43 1 7.0245 -2.6633 4.7196 44 1 5.5378 -2.1854 5.5960 45 1 3.6564 0.5153 -1.7544 46 1 2.2645 0.5592 -2.8774 47 1 4.4401 -1.5372 -2.6113 48 1 3.5563 -0.9978 -4.0780 49 1 1.6968 -2.3685 -3.6097 50 1 2.9053 -3.3291 -2.7028 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073123367.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:13 Heat of formation + Delta-G solvation = -0.449519 kcal Electronic energy + Delta-G solvation = -30347.046114 eV Core-core repulsion = 26376.405981 eV Total energy + Delta-G solvation = -3970.640132 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.88471 -40.34763 -38.31566 -36.38954 -35.66271 -34.92374 -32.22757 -30.52989 -29.62928 -28.90228 -27.73102 -27.59386 -25.96008 -25.50695 -23.70063 -22.59974 -22.04742 -20.30809 -19.58163 -18.74340 -18.27629 -17.04121 -16.88970 -16.67727 -16.45444 -16.03503 -15.42752 -15.08776 -14.71742 -14.39691 -14.24708 -13.88234 -13.86446 -13.69963 -13.53876 -13.25685 -13.00584 -12.83540 -12.47230 -12.30778 -12.06434 -12.02227 -11.93076 -11.84592 -11.80730 -11.64780 -11.31288 -11.12889 -11.00737 -10.91934 -10.67973 -10.41882 -10.17543 -10.07785 -9.85147 -9.67635 -9.65012 -9.51475 -8.75717 -8.60880 -8.52367 -6.84568 -5.71723 -3.05701 2.54468 2.73346 2.89856 2.95712 3.39617 3.44970 3.47638 4.21844 4.37197 4.40853 4.49212 4.64204 4.67455 4.70671 4.87474 4.96735 5.02445 5.08985 5.24736 5.33028 5.35765 5.40887 5.46756 5.49428 5.52197 5.56513 5.63654 5.65514 5.67235 5.71288 5.77457 5.80482 5.84184 5.88956 5.95375 6.02439 6.17769 6.22993 6.45908 6.52914 6.53643 6.66162 6.69766 7.10293 7.55392 7.61795 7.82253 7.87826 8.15196 8.23889 8.25867 9.20762 9.80906 10.46485 11.39797 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018088 B = 0.002744 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.620662 B =10201.336641 C =10473.267104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.175 3.825 3 H 0.094 0.906 4 C -0.156 4.156 5 C 0.545 3.455 6 O -0.550 6.550 7 N -0.643 5.643 8 C 0.119 3.881 9 C -0.105 4.105 10 C 0.120 3.880 11 C -0.116 4.116 12 C 0.180 3.820 13 N -0.605 5.605 14 C -0.228 4.228 15 H 0.079 0.921 16 C -0.008 4.008 17 N -0.920 5.920 18 Si 0.911 3.089 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.291 1.291 22 C 0.154 3.846 23 N -0.604 5.604 24 C 0.106 3.894 25 C -0.130 4.130 26 C -0.157 4.157 27 C 0.515 3.485 28 O -0.532 6.532 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.101 0.899 33 H 0.108 0.892 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.047 0.953 41 H 0.044 0.956 42 H 0.252 0.748 43 H 0.026 0.974 44 H 0.042 0.958 45 H 0.092 0.908 46 H 0.063 0.937 47 H 0.082 0.918 48 H 0.086 0.914 49 H 0.100 0.900 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.692 16.079 -15.357 22.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.072 3.928 3 H 0.112 0.888 4 C -0.197 4.197 5 C 0.335 3.665 6 O -0.429 6.429 7 N -0.378 5.378 8 C -0.003 4.003 9 C -0.107 4.107 10 C -0.003 4.003 11 C -0.154 4.154 12 C 0.055 3.945 13 N -0.331 5.331 14 C -0.357 4.357 15 H 0.096 0.904 16 C -0.204 4.204 17 N -0.568 5.568 18 Si 0.742 3.258 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.218 1.218 22 C 0.027 3.973 23 N -0.338 5.338 24 C -0.017 4.017 25 C -0.168 4.168 26 C -0.197 4.197 27 C 0.303 3.697 28 O -0.409 6.409 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.119 0.881 33 H 0.127 0.873 34 H 0.105 0.895 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.044 0.956 44 H 0.060 0.940 45 H 0.111 0.889 46 H 0.081 0.919 47 H 0.100 0.900 48 H 0.104 0.896 49 H 0.118 0.882 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.923 15.933 -15.483 22.993 hybrid contribution 0.046 -0.474 0.972 1.082 sum -5.877 15.459 -14.512 22.003 Atomic orbital electron populations 1.22184 0.94228 1.03896 1.02224 1.20632 0.93691 0.96105 0.82381 0.88816 1.22121 0.92533 1.05254 0.99784 1.20059 0.89215 0.77036 0.80161 1.90598 1.70403 1.43320 1.38573 1.49846 1.10136 1.54680 1.23125 1.22891 0.98609 0.92686 0.86148 1.22183 0.95589 0.94431 0.98453 1.22740 0.83655 0.96449 0.97469 1.22453 1.00632 0.93837 0.98522 1.21217 1.00412 0.91042 0.81791 1.44555 1.81604 1.03058 1.03930 1.19083 1.40467 0.92299 0.83806 0.90358 1.24805 1.01786 0.96419 0.97418 1.69972 1.53034 1.06750 1.27035 0.86055 0.77233 0.79240 0.83280 1.20524 1.21773 1.21794 1.21136 0.96264 0.88155 0.91747 1.48290 1.50972 1.11987 1.22576 1.22091 0.94313 0.95968 0.89336 1.22558 0.98877 0.94424 1.00927 1.22329 0.99458 1.01104 0.96819 1.20972 0.80080 0.81556 0.87060 1.90707 1.39826 1.54550 1.55850 0.90769 0.91286 0.92172 0.88114 0.87348 0.89547 0.90140 0.90689 0.89935 0.92176 0.91929 0.93488 0.93822 0.93781 0.95640 0.93989 0.88927 0.91892 0.89967 0.89551 0.88170 0.88245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.57 9.20 37.16 0.34 -1.22 16 2 C 0.18 1.89 2.43 -67.93 -0.17 1.72 16 3 H 0.09 0.94 7.88 -51.93 -0.41 0.53 16 4 C -0.16 -1.91 4.95 -27.88 -0.14 -2.05 16 5 C 0.54 7.96 7.94 -10.98 -0.09 7.87 16 6 O -0.55 -8.87 14.38 5.56 0.08 -8.79 16 7 N -0.64 -9.42 3.70 -185.74 -0.69 -10.11 16 8 C 0.12 1.77 7.78 -7.34 -0.06 1.71 16 9 C -0.10 -1.73 1.06 -155.21 -0.16 -1.89 16 10 C 0.12 1.71 8.03 -7.47 -0.06 1.65 16 11 C -0.12 -2.17 6.41 -25.61 -0.16 -2.33 16 12 C 0.18 4.29 5.39 -2.83 -0.02 4.28 16 13 N -0.60 -14.89 3.41 -170.53 -0.58 -15.47 16 14 C -0.23 -6.20 10.28 -15.06 -0.15 -6.35 16 15 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 16 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 17 N -0.92 -26.82 10.30 55.49 0.57 -26.25 16 18 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 22 C 0.15 2.95 6.70 -3.21 -0.02 2.93 16 23 N -0.60 -6.87 2.21 -164.75 -0.36 -7.24 16 24 C 0.11 0.96 6.86 -3.12 -0.02 0.93 16 25 C -0.13 -1.03 7.18 -25.10 -0.18 -1.21 16 26 C -0.16 -1.48 6.85 -26.74 -0.18 -1.66 16 27 C 0.52 6.74 7.40 -10.72 -0.08 6.66 16 28 O -0.53 -8.85 15.11 5.55 0.08 -8.77 16 29 H 0.07 0.86 6.79 -51.93 -0.35 0.51 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.11 1.56 6.65 -51.93 -0.35 1.22 16 34 H 0.09 1.15 8.06 -51.92 -0.42 0.73 16 35 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.07 1.08 8.13 -51.93 -0.42 0.66 16 37 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.06 1.11 8.07 -51.93 -0.42 0.69 16 39 H 0.06 1.11 8.14 -51.92 -0.42 0.69 16 40 H 0.05 1.25 7.38 -51.93 -0.38 0.87 16 41 H 0.04 1.16 7.49 -51.93 -0.39 0.77 16 42 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 43 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.04 0.77 8.00 -51.93 -0.42 0.35 16 45 H 0.09 0.97 6.71 -51.93 -0.35 0.62 16 46 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 47 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 48 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 50 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 392.93 15.07 5.92 5.92 Total: -1.00 -33.13 392.93 -9.77 -42.90 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -8.52 Total: 0.24 kcal Atomic # 6 Polarization: 11.97 SS G_CDS: -1.25 Total: 10.72 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: -1.06 Total: -59.06 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: 0.16 Total: -17.56 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.13 -9.77 -42.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073123367.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.452 kcal (2) G-P(sol) polarization free energy of solvation -33.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds