Wall clock time and date at job start Tue Mar 31 2020 19:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47482 * 2 1 4 4 C 1.52997 * 109.46909 * 120.00029 * 2 1 3 5 5 C 1.50704 * 109.47152 * 184.99825 * 4 2 1 6 6 O 1.21282 * 119.99841 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99896 * 179.97438 * 5 4 2 8 8 C 1.47387 * 135.85476 * 359.63396 * 7 5 4 9 9 C 1.52068 * 87.40959 * 154.38945 * 8 7 5 10 10 C 1.47394 * 135.85232 * 180.02562 * 7 5 4 11 11 C 1.53515 * 117.21331 * 267.27416 * 9 8 7 12 12 C 1.54631 * 102.70707 * 262.93383 * 11 9 8 13 13 N 1.47144 * 107.37633 * 339.38282 * 12 11 9 14 14 C 1.36937 * 125.58020 * 179.10649 * 13 12 11 15 15 H 1.08003 * 119.99509 * 179.97438 * 14 13 12 16 16 C 1.38809 * 119.99907 * 359.97438 * 14 13 12 17 17 N 1.31617 * 119.99982 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00037 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46952 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47207 * 119.99640 * 18 16 14 21 21 H 1.48498 * 109.46950 * 240.00019 * 18 16 14 22 22 C 1.47764 * 108.84024 * 359.08667 * 13 12 11 23 23 N 1.46501 * 109.47031 * 239.99583 * 2 1 3 24 24 C 1.46768 * 124.34528 * 120.00335 * 23 2 1 25 25 C 1.54479 * 105.47008 * 162.98291 * 24 23 2 26 26 C 1.54623 * 101.76734 * 25.41638 * 25 24 23 27 27 C 1.34735 * 124.30373 * 299.96431 * 23 2 1 28 28 O 1.21286 * 125.12007 * 0.42227 * 27 23 2 29 29 H 1.08997 * 109.47482 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47172 * 300.00225 * 1 2 3 31 31 H 1.09003 * 109.47081 * 59.99939 * 1 2 3 32 32 H 1.09002 * 109.47163 * 304.99867 * 4 2 1 33 33 H 1.09000 * 109.47425 * 65.00122 * 4 2 1 34 34 H 1.09008 * 113.54189 * 268.99375 * 8 7 5 35 35 H 1.08996 * 113.54366 * 39.67477 * 8 7 5 36 36 H 1.09006 * 113.53738 * 320.31933 * 10 7 5 37 37 H 1.08998 * 113.54478 * 90.92469 * 10 7 5 38 38 H 1.09001 * 110.76232 * 21.23767 * 11 9 8 39 39 H 1.09007 * 110.76612 * 144.62513 * 11 9 8 40 40 H 1.09000 * 109.86009 * 98.82921 * 12 11 9 41 41 H 1.09001 * 109.86314 * 219.93201 * 12 11 9 42 42 H 0.97000 * 119.99994 * 180.02562 * 17 16 14 43 43 H 1.08994 * 110.40551 * 263.50378 * 22 13 12 44 44 H 1.09000 * 110.40534 * 141.07677 * 22 13 12 45 45 H 1.09000 * 110.24529 * 43.98091 * 24 23 2 46 46 H 1.09007 * 110.24087 * 281.98355 * 24 23 2 47 47 H 1.08994 * 110.96846 * 267.29074 * 25 24 23 48 48 H 1.09004 * 110.96814 * 143.53721 * 25 24 23 49 49 H 1.09002 * 110.48860 * 93.88058 * 26 25 24 50 50 H 1.08998 * 110.48497 * 216.38951 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5419 -0.6150 1.3127 6 8 4.1449 -0.0204 0.4445 7 7 4.2147 -1.1797 2.3349 8 6 3.8568 -1.9493 3.5399 9 6 5.2486 -2.5591 3.4797 10 6 5.6282 -1.2906 2.7377 11 6 5.4022 -3.8841 2.7197 12 6 5.3409 -4.9350 3.8524 13 7 5.6679 -4.2450 5.1102 14 6 5.7045 -4.8242 6.3505 15 1 5.9570 -4.2303 7.2165 16 6 5.4169 -6.1745 6.4947 17 7 5.1087 -6.8980 5.4393 18 14 5.4675 -6.9648 8.1865 19 1 5.8383 -5.9436 9.1989 20 1 4.1305 -7.5229 8.5123 21 1 6.4745 -8.0561 8.1931 22 6 5.9509 -2.8249 4.8158 23 7 2.0183 -0.6907 -1.1961 24 6 2.8656 -0.0713 -2.2221 25 6 3.4724 -1.2467 -3.0200 26 6 2.4204 -2.3572 -2.7946 27 6 1.7473 -1.9764 -1.4944 28 8 1.0645 -2.7197 -0.8218 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6053 -0.2617 2.1370 33 1 1.7516 -1.7715 1.2056 34 1 3.6915 -1.3279 4.4201 35 1 3.0563 -2.6701 3.3742 36 1 6.3069 -1.4615 1.9019 37 1 5.9590 -0.4842 3.3922 38 1 4.5803 -4.0243 2.0176 39 1 6.3624 -3.9256 2.2055 40 1 4.3378 -5.3575 3.9117 41 1 6.0673 -5.7255 3.6639 42 1 4.9074 -7.8415 5.5401 43 1 7.0245 -2.6633 4.7196 44 1 5.5378 -2.1854 5.5960 45 1 3.6564 0.5153 -1.7544 46 1 2.2645 0.5592 -2.8774 47 1 4.4401 -1.5372 -2.6113 48 1 3.5563 -0.9978 -4.0780 49 1 1.6968 -2.3685 -3.6097 50 1 2.9053 -3.3291 -2.7028 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073123367.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:12 Heat of formation + Delta-G solvation = -20.648761 kcal Electronic energy + Delta-G solvation = -30347.922018 eV Core-core repulsion = 26376.405981 eV Total energy + Delta-G solvation = -3971.516037 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.02222 -41.40261 -39.55167 -37.47291 -37.21177 -35.78145 -34.10318 -31.68942 -30.97235 -30.36377 -28.91419 -28.38589 -27.24890 -27.02120 -25.38468 -23.50321 -22.76811 -22.16816 -20.77540 -19.84619 -19.56138 -18.60655 -17.99427 -17.81856 -17.40783 -17.19218 -16.74212 -16.55792 -16.18926 -15.72539 -15.61651 -15.30890 -14.79908 -14.63869 -14.57243 -14.31510 -14.11439 -13.84889 -13.80385 -13.72065 -13.57177 -13.31274 -12.95659 -12.92922 -12.84926 -12.78975 -12.70681 -12.44028 -12.28079 -12.10847 -11.98340 -11.92772 -11.84636 -11.82511 -11.69114 -11.24811 -10.76102 -10.69322 -10.62378 -9.71466 -9.63085 -8.87200 -7.82273 -5.17631 1.48236 1.48698 1.58523 1.59037 1.59884 1.79150 2.11340 2.51461 3.20997 3.34830 3.43370 3.48614 3.56475 3.67165 3.78892 3.80603 4.02687 4.06235 4.09496 4.18348 4.22685 4.27183 4.43126 4.46347 4.51064 4.59115 4.64123 4.67202 4.68442 4.71419 4.73714 4.80882 4.83533 4.90398 4.92337 4.98155 5.01917 5.05034 5.14559 5.18496 5.23042 5.25337 5.49349 5.63982 5.70433 5.77081 6.20647 6.23708 6.70472 7.10365 7.11892 7.21301 7.79630 8.44142 9.28469 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018088 B = 0.002744 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.620662 B =10201.336641 C =10473.267104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.170 3.830 3 H 0.107 0.893 4 C -0.151 4.151 5 C 0.541 3.459 6 O -0.565 6.565 7 N -0.646 5.646 8 C 0.125 3.875 9 C -0.102 4.102 10 C 0.130 3.870 11 C -0.101 4.101 12 C 0.192 3.808 13 N -0.626 5.626 14 C -0.234 4.234 15 H 0.089 0.911 16 C -0.070 4.070 17 N -0.954 5.954 18 Si 0.977 3.023 19 H -0.261 1.261 20 H -0.295 1.295 21 H -0.296 1.296 22 C 0.153 3.847 23 N -0.605 5.605 24 C 0.103 3.897 25 C -0.120 4.120 26 C -0.154 4.154 27 C 0.499 3.501 28 O -0.580 6.580 29 H 0.046 0.954 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.124 0.876 33 H 0.083 0.917 34 H 0.111 0.889 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.111 0.889 38 H 0.058 0.942 39 H 0.073 0.927 40 H 0.008 0.992 41 H 0.004 0.996 42 H 0.244 0.756 43 H 0.036 0.964 44 H 0.059 0.941 45 H 0.080 0.920 46 H 0.091 0.909 47 H 0.066 0.934 48 H 0.120 0.880 49 H 0.123 0.877 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.501 19.133 -15.735 25.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.067 3.933 3 H 0.125 0.875 4 C -0.191 4.191 5 C 0.333 3.667 6 O -0.445 6.445 7 N -0.380 5.380 8 C 0.003 3.997 9 C -0.103 4.103 10 C 0.008 3.992 11 C -0.139 4.139 12 C 0.067 3.933 13 N -0.352 5.352 14 C -0.363 4.363 15 H 0.107 0.893 16 C -0.263 4.263 17 N -0.604 5.604 18 Si 0.806 3.194 19 H -0.186 1.186 20 H -0.223 1.223 21 H -0.224 1.224 22 C 0.027 3.973 23 N -0.338 5.338 24 C -0.019 4.019 25 C -0.158 4.158 26 C -0.194 4.194 27 C 0.289 3.711 28 O -0.461 6.461 29 H 0.065 0.935 30 H 0.107 0.893 31 H 0.090 0.910 32 H 0.142 0.858 33 H 0.101 0.899 34 H 0.129 0.871 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.128 0.872 38 H 0.077 0.923 39 H 0.092 0.908 40 H 0.026 0.974 41 H 0.023 0.977 42 H 0.053 0.947 43 H 0.054 0.946 44 H 0.077 0.923 45 H 0.098 0.902 46 H 0.109 0.891 47 H 0.085 0.915 48 H 0.138 0.862 49 H 0.141 0.859 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.702 19.062 -15.870 25.450 hybrid contribution 0.023 -1.377 1.077 1.748 sum -5.679 17.685 -14.793 23.745 Atomic orbital electron populations 1.22104 0.93128 1.02532 1.03819 1.20790 0.94555 0.96311 0.81679 0.87516 1.22124 0.91093 1.04129 1.01773 1.20434 0.90012 0.76631 0.79661 1.90592 1.70900 1.44080 1.38883 1.49851 1.10371 1.54642 1.23168 1.22887 0.96986 0.92712 0.87163 1.22025 0.97077 0.94323 0.96892 1.22731 0.83532 0.95513 0.97462 1.22214 1.01212 0.93716 0.96771 1.20869 0.96905 0.91749 0.83813 1.44844 1.81467 1.05560 1.03336 1.19522 1.38925 0.92615 0.85206 0.89326 1.25652 1.02492 0.97283 1.00843 1.70207 1.54696 1.06429 1.29042 0.85025 0.76519 0.78265 0.79633 1.18557 1.22267 1.22362 1.21316 0.97118 0.85313 0.93509 1.48496 1.50551 1.11715 1.22990 1.22266 0.94136 0.96385 0.89125 1.22571 0.97362 0.93160 1.02716 1.22376 1.00091 1.01303 0.95618 1.21641 0.79737 0.81817 0.87939 1.90676 1.42038 1.55827 1.57537 0.93486 0.89285 0.91001 0.85801 0.89855 0.87102 0.91550 0.90655 0.87158 0.92279 0.90822 0.97363 0.97749 0.94657 0.94615 0.92264 0.90207 0.89066 0.91471 0.86154 0.85868 0.88859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 9.20 71.98 0.66 -2.09 16 2 C 0.17 3.42 2.43 44.99 0.11 3.53 16 3 H 0.11 1.89 7.88 -2.39 -0.02 1.87 16 4 C -0.15 -3.54 4.95 29.85 0.15 -3.39 16 5 C 0.54 14.99 7.94 87.66 0.70 15.68 16 6 O -0.56 -17.23 14.38 -3.04 -0.04 -17.27 16 7 N -0.65 -17.65 3.70 -859.94 -3.18 -20.83 16 8 C 0.13 3.50 7.78 83.76 0.65 4.15 16 9 C -0.10 -3.19 1.06 -52.62 -0.06 -3.25 16 10 C 0.13 3.34 8.03 83.67 0.67 4.01 16 11 C -0.10 -3.79 6.41 31.32 0.20 -3.59 16 12 C 0.19 9.55 5.39 86.81 0.47 10.02 16 13 N -0.63 -31.02 3.41 -693.42 -2.36 -33.38 16 14 C -0.23 -12.72 10.28 84.03 0.86 -11.86 16 15 H 0.09 4.53 7.83 -2.91 -0.02 4.51 16 16 C -0.07 -3.97 5.49 84.86 0.47 -3.50 16 17 N -0.95 -58.00 10.30 21.65 0.22 -57.77 16 18 Si 0.98 45.58 29.55 68.60 2.03 47.61 16 19 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 20 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 21 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 22 C 0.15 5.60 6.70 86.23 0.58 6.18 16 23 N -0.60 -13.09 2.21 -793.56 -1.75 -14.85 16 24 C 0.10 1.63 6.86 86.83 0.60 2.23 16 25 C -0.12 -1.65 7.18 31.65 0.23 -1.42 16 26 C -0.15 -2.73 6.85 30.59 0.21 -2.52 16 27 C 0.50 13.04 7.40 87.85 0.65 13.69 16 28 O -0.58 -20.08 15.11 -3.05 -0.05 -20.13 16 29 H 0.05 1.10 6.79 -2.39 -0.02 1.08 16 30 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.08 2.46 6.65 -2.39 -0.02 2.44 16 34 H 0.11 2.61 8.06 -2.38 -0.02 2.59 16 35 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.07 1.98 8.13 -2.38 -0.02 1.96 16 37 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.06 2.22 8.07 -2.39 -0.02 2.21 16 39 H 0.07 2.59 8.14 -2.38 -0.02 2.57 16 40 H 0.01 0.46 7.38 -2.39 -0.02 0.44 16 41 H 0.00 0.24 7.49 -2.39 -0.02 0.22 16 42 H 0.24 14.52 8.31 -92.71 -0.77 13.75 16 43 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.06 1.99 8.00 -2.39 -0.02 1.97 16 45 H 0.08 1.52 6.71 -2.39 -0.02 1.50 16 46 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 47 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 48 H 0.12 0.85 8.14 -2.38 -0.02 0.83 16 49 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 50 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -75.34 392.93 2.92 -72.42 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 0.91 Total: 16.34 kcal Atomic # 6 Polarization: 20.71 SS G_CDS: 7.14 Total: 27.86 kcal Atomic # 7 Polarization: -119.75 SS G_CDS: -7.07 Total: -126.82 kcal Atomic # 8 Polarization: -37.31 SS G_CDS: -0.09 Total: -37.40 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -75.34 2.92 -72.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073123367.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.767 kcal (2) G-P(sol) polarization free energy of solvation -75.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds