Wall clock time and date at job start Tue Mar 31 2020 19:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46917 * 2 1 4 4 C 1.53001 * 109.46673 * 120.00313 * 2 1 3 5 5 C 1.50707 * 109.46918 * 185.00151 * 4 2 1 6 6 O 1.21282 * 119.99595 * 359.97438 * 5 4 2 7 7 N 1.34770 * 119.99843 * 180.02562 * 5 4 2 8 8 C 1.47400 * 125.59141 * 359.96576 * 7 5 4 9 9 C 1.54866 * 104.82043 * 204.45383 * 8 7 5 10 10 C 1.55167 * 101.73286 * 322.77126 * 9 8 7 11 11 H 1.08994 * 113.26295 * 158.94877 * 10 9 8 12 12 C 1.53753 * 108.31123 * 285.38946 * 10 9 8 13 13 N 1.46588 * 108.11159 * 124.37204 * 12 10 9 14 14 C 1.36943 * 125.30989 * 181.28726 * 13 12 10 15 15 H 1.08002 * 119.99788 * 359.97438 * 14 13 12 16 16 C 1.38811 * 119.99622 * 180.27725 * 14 13 12 17 17 N 1.31614 * 120.00467 * 359.72375 * 16 14 13 18 18 Si 1.86801 * 119.99700 * 179.72266 * 16 14 13 19 19 H 1.48501 * 109.46896 * 89.99850 * 18 16 14 20 20 H 1.48499 * 109.47039 * 210.00011 * 18 16 14 21 21 H 1.48501 * 109.47275 * 329.99811 * 18 16 14 22 22 C 1.46708 * 109.37838 * 1.54911 * 13 12 10 23 23 C 1.46711 * 125.58635 * 180.02562 * 7 5 4 24 24 H 1.09000 * 111.53364 * 56.04606 * 23 7 5 25 25 N 1.46500 * 109.47239 * 240.00027 * 2 1 3 26 26 C 1.46761 * 124.34726 * 119.72432 * 25 2 1 27 27 C 1.54663 * 105.37839 * 162.85531 * 26 25 2 28 28 C 1.54631 * 101.68497 * 25.76906 * 27 26 25 29 29 C 1.34422 * 124.34891 * 300.02713 * 25 2 1 30 30 O 1.21276 * 124.94550 * 0.38583 * 29 25 2 31 31 H 1.09004 * 109.47233 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47152 * 300.00119 * 1 2 3 33 33 H 1.09001 * 109.46972 * 59.99879 * 1 2 3 34 34 H 1.08999 * 109.47423 * 65.00036 * 4 2 1 35 35 H 1.08996 * 109.47387 * 304.99787 * 4 2 1 36 36 H 1.08999 * 110.37048 * 85.62040 * 8 7 5 37 37 H 1.09001 * 110.36990 * 323.29043 * 8 7 5 38 38 H 1.08992 * 110.97809 * 204.66152 * 9 8 7 39 39 H 1.09000 * 111.00369 * 80.89418 * 9 8 7 40 40 H 1.09003 * 109.74357 * 4.70244 * 12 10 9 41 41 H 1.08999 * 109.74625 * 244.04665 * 12 10 9 42 42 H 0.96995 * 120.00147 * 180.02562 * 17 16 14 43 43 H 1.09007 * 109.98447 * 101.13769 * 22 13 12 44 44 H 1.08994 * 109.98850 * 222.44530 * 22 13 12 45 45 H 1.08998 * 110.24822 * 281.98193 * 26 25 2 46 46 H 1.08997 * 110.24528 * 43.98864 * 26 25 2 47 47 H 1.08994 * 111.19121 * 267.59190 * 27 26 25 48 48 H 1.09001 * 110.84968 * 143.79497 * 27 26 25 49 49 H 1.08999 * 110.47918 * 216.30258 * 28 27 26 50 50 H 1.09003 * 110.48403 * 93.66539 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3128 6 8 4.1450 -0.0212 0.4442 7 7 4.2148 -1.1807 2.3343 8 6 3.6093 -1.9282 3.4511 9 6 4.6334 -1.8122 4.6069 10 6 5.9817 -1.8979 3.8436 11 1 6.8198 -1.4817 4.4024 12 6 6.2034 -3.3584 3.4172 13 7 6.4040 -3.3837 1.9653 14 6 6.6071 -4.5104 1.2139 15 1 6.6290 -5.4799 1.6894 16 6 6.7911 -4.4058 -0.1580 17 7 6.7650 -3.2243 -0.7373 18 14 7.0759 -5.9420 -1.1819 19 1 5.7706 -6.4751 -1.6480 20 1 7.9206 -5.6048 -2.3558 21 1 7.7629 -6.9672 -0.3559 22 6 6.3595 -2.0132 1.4438 23 6 5.6701 -1.1522 2.5177 24 1 6.0518 -0.1313 2.5312 25 7 2.0184 -0.6906 -1.1962 26 6 2.8608 -0.0695 -2.2249 27 6 3.4726 -1.2468 -3.0199 28 6 2.4201 -2.3570 -2.7948 29 6 1.7476 -1.9728 -1.4953 30 8 1.0640 -2.7140 -0.8214 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 1.7515 -1.7716 1.2056 35 1 1.6053 -0.2619 2.1370 36 1 3.4657 -2.9728 3.1748 37 1 2.6596 -1.4771 3.7389 38 1 4.5278 -2.6413 5.3065 39 1 4.5360 -0.8559 5.1207 40 1 5.3294 -3.9550 3.6786 41 1 7.0851 -3.7584 3.9179 42 1 6.8932 -3.1513 -1.6960 43 1 7.3715 -1.6500 1.2640 44 1 5.7835 -1.9850 0.5190 45 1 2.2559 0.5575 -2.8799 46 1 3.6504 0.5208 -1.7600 47 1 4.4401 -1.5377 -2.6110 48 1 3.5572 -0.9981 -4.0777 49 1 2.9049 -3.3287 -2.7008 50 1 1.6967 -2.3679 -3.6101 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076452907.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:37 Heat of formation + Delta-G solvation = -30.867172 kcal Electronic energy + Delta-G solvation = -32114.771317 eV Core-core repulsion = 28142.812176 eV Total energy + Delta-G solvation = -3971.959141 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.46129 -39.77899 -37.73767 -35.94632 -34.66566 -34.57237 -32.15616 -30.76644 -29.93226 -29.00630 -27.65135 -27.13112 -26.11367 -24.63371 -22.89565 -22.08274 -21.58238 -20.67799 -19.57156 -18.70663 -18.13765 -17.00943 -16.59436 -16.53859 -16.11016 -15.76331 -14.99712 -14.83973 -14.31600 -14.17460 -13.78617 -13.64853 -13.43979 -13.28439 -13.14765 -12.97381 -12.66540 -12.60262 -12.42449 -12.06829 -11.95038 -11.71528 -11.66269 -11.55544 -11.41820 -11.25397 -11.05064 -10.97860 -10.92914 -10.70577 -10.59498 -10.47202 -10.25584 -10.10579 -9.75883 -9.63355 -9.25914 -9.16616 -8.55989 -8.36518 -7.99797 -6.74877 -5.59225 -2.99534 2.96381 3.18840 3.33718 3.42842 3.47877 3.48767 3.52113 4.52371 4.62853 4.74204 4.85946 4.89286 4.97669 5.08945 5.17420 5.22738 5.25767 5.38310 5.47143 5.52803 5.55454 5.59729 5.63138 5.69925 5.73072 5.79016 5.82826 5.86058 5.92438 5.92915 6.06217 6.07290 6.16132 6.22095 6.22562 6.31477 6.38271 6.54444 6.57426 6.65093 6.71464 6.90843 6.93826 7.50327 7.52581 7.70537 7.99198 8.13211 8.44858 8.56266 8.77227 9.28645 9.90088 10.52794 11.44949 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009398 B = 0.006262 C = 0.004342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2978.707198 B = 4470.204930 C = 6446.536592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.175 3.825 3 H 0.092 0.908 4 C -0.156 4.156 5 C 0.533 3.467 6 O -0.532 6.532 7 N -0.599 5.599 8 C 0.104 3.896 9 C -0.124 4.124 10 C -0.111 4.111 11 H 0.094 0.906 12 C 0.142 3.858 13 N -0.598 5.598 14 C -0.227 4.227 15 H 0.075 0.925 16 C -0.005 4.005 17 N -0.912 5.912 18 Si 0.908 3.092 19 H -0.289 1.289 20 H -0.290 1.290 21 H -0.282 1.282 22 C 0.158 3.842 23 C 0.115 3.885 24 H 0.075 0.925 25 N -0.600 5.600 26 C 0.109 3.891 27 C -0.131 4.131 28 C -0.155 4.155 29 C 0.522 3.478 30 O -0.542 6.542 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.024 0.976 41 H 0.019 0.981 42 H 0.250 0.750 43 H 0.018 0.982 44 H 0.107 0.893 45 H 0.058 0.942 46 H 0.093 0.907 47 H 0.095 0.905 48 H 0.080 0.920 49 H 0.100 0.900 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.252 9.377 3.511 14.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.072 3.928 3 H 0.110 0.890 4 C -0.197 4.197 5 C 0.321 3.679 6 O -0.409 6.409 7 N -0.333 5.333 8 C -0.020 4.020 9 C -0.162 4.162 10 C -0.130 4.130 11 H 0.113 0.887 12 C 0.016 3.984 13 N -0.325 5.325 14 C -0.356 4.356 15 H 0.093 0.907 16 C -0.202 4.202 17 N -0.559 5.559 18 Si 0.738 3.262 19 H -0.216 1.216 20 H -0.217 1.217 21 H -0.208 1.208 22 C 0.033 3.967 23 C 0.011 3.989 24 H 0.093 0.907 25 N -0.334 5.334 26 C -0.014 4.014 27 C -0.168 4.168 28 C -0.195 4.195 29 C 0.311 3.689 30 O -0.420 6.420 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.124 0.876 35 H 0.112 0.888 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.099 0.901 39 H 0.088 0.912 40 H 0.041 0.959 41 H 0.037 0.963 42 H 0.061 0.939 43 H 0.036 0.964 44 H 0.125 0.875 45 H 0.076 0.924 46 H 0.111 0.889 47 H 0.114 0.886 48 H 0.099 0.901 49 H 0.118 0.882 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.307 9.335 3.163 14.261 hybrid contribution 0.313 -0.929 -0.403 1.060 sum -9.995 8.406 2.761 13.348 Atomic orbital electron populations 1.22179 0.94662 1.03668 1.01880 1.20584 0.93285 0.96143 0.82788 0.88962 1.22141 0.93348 1.04900 0.99302 1.19970 0.89087 0.78494 0.80350 1.90633 1.70142 1.43165 1.37003 1.48243 1.07485 1.53685 1.23897 1.22255 0.96040 0.97198 0.86482 1.22791 0.94788 1.01958 0.96660 1.23052 0.96923 0.97693 0.95366 0.88742 1.21168 0.97616 0.92395 0.87220 1.44170 1.84781 1.03198 1.00317 1.18988 1.42162 0.85322 0.89104 0.90701 1.24767 1.02098 0.96741 0.96567 1.69922 1.56066 1.20536 1.09391 0.86184 0.77638 0.82274 0.80084 1.21624 1.21663 1.20814 1.21693 0.97367 0.81985 0.95690 1.22622 0.80444 0.99004 0.96831 0.90710 1.48133 1.50960 1.11983 1.22286 1.22107 0.94095 0.96084 0.89140 1.22614 0.99863 0.93911 1.00454 1.22290 0.99197 1.01703 0.96316 1.20846 0.79610 0.81397 0.87066 1.90638 1.40455 1.54854 1.56015 0.90895 0.91614 0.92333 0.87632 0.88803 0.91136 0.91533 0.90145 0.91231 0.95857 0.96290 0.93921 0.96398 0.87510 0.92382 0.88853 0.88611 0.90096 0.88182 0.88759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.92 9.20 37.16 0.34 -1.58 16 2 C 0.18 2.44 2.43 -67.93 -0.16 2.28 16 3 H 0.09 1.21 7.88 -51.93 -0.41 0.80 16 4 C -0.16 -2.36 4.13 -27.88 -0.12 -2.47 16 5 C 0.53 9.95 7.35 -10.98 -0.08 9.87 16 6 O -0.53 -11.23 13.36 5.56 0.07 -11.15 16 7 N -0.60 -11.00 3.02 -162.16 -0.49 -11.49 16 8 C 0.10 1.56 6.23 -2.57 -0.02 1.55 16 9 C -0.12 -1.63 6.30 -24.60 -0.16 -1.78 16 10 C -0.11 -1.86 4.25 -87.87 -0.37 -2.23 16 11 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 12 C 0.14 2.93 6.41 -3.60 -0.02 2.91 16 13 N -0.60 -15.48 3.38 -171.95 -0.58 -16.07 16 14 C -0.23 -6.45 10.25 -15.06 -0.15 -6.61 16 15 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 16 C -0.01 -0.16 5.48 -17.43 -0.10 -0.25 16 17 N -0.91 -26.81 10.16 55.49 0.56 -26.25 16 18 Si 0.91 22.54 29.55 -169.99 -5.02 17.51 16 19 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 C 0.16 3.99 5.20 -3.43 -0.02 3.97 16 23 C 0.12 2.27 3.65 -66.12 -0.24 2.03 16 24 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 25 N -0.60 -9.44 2.20 -164.74 -0.36 -9.80 16 26 C 0.11 1.53 6.87 -3.02 -0.02 1.51 16 27 C -0.13 -1.90 7.19 -25.00 -0.18 -2.08 16 28 C -0.15 -2.40 6.86 -26.74 -0.18 -2.58 16 29 C 0.52 9.38 7.39 -10.86 -0.08 9.30 16 30 O -0.54 -11.21 15.07 5.56 0.08 -11.12 16 31 H 0.07 1.01 6.77 -51.93 -0.35 0.66 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.11 1.85 6.65 -51.93 -0.35 1.51 16 35 H 0.09 1.10 7.84 -51.93 -0.41 0.69 16 36 H 0.07 1.22 7.49 -51.93 -0.39 0.83 16 37 H 0.07 0.80 7.46 -51.93 -0.39 0.42 16 38 H 0.08 0.93 7.96 -51.93 -0.41 0.52 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.02 0.48 6.78 -51.93 -0.35 0.13 16 41 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.02 0.50 8.14 -51.92 -0.42 0.08 16 44 H 0.11 3.10 5.32 -51.93 -0.28 2.83 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.09 1.48 6.74 -51.93 -0.35 1.13 16 47 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 48 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 49 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 50 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 381.96 15.07 5.76 5.76 Total: -1.00 -34.17 381.96 -9.84 -44.01 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -8.30 Total: 4.77 kcal Atomic # 6 Polarization: 15.38 SS G_CDS: -1.56 Total: 13.82 kcal Atomic # 7 Polarization: -62.73 SS G_CDS: -0.87 Total: -63.60 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: 0.16 Total: -22.27 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.17 -9.84 -44.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076452907.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.141 kcal (2) G-P(sol) polarization free energy of solvation -34.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds