Wall clock time and date at job start Tue Mar 31 2020 19:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46917 * 2 1 4 4 C 1.53001 * 109.46673 * 120.00313 * 2 1 3 5 5 C 1.50707 * 109.46918 * 185.00151 * 4 2 1 6 6 O 1.21282 * 119.99595 * 359.97438 * 5 4 2 7 7 N 1.34770 * 119.99843 * 180.02562 * 5 4 2 8 8 C 1.47400 * 125.59141 * 359.96576 * 7 5 4 9 9 C 1.54866 * 104.82043 * 204.45383 * 8 7 5 10 10 C 1.55167 * 101.73286 * 322.77126 * 9 8 7 11 11 H 1.08994 * 113.26295 * 158.94877 * 10 9 8 12 12 C 1.53753 * 108.31123 * 285.38946 * 10 9 8 13 13 N 1.46588 * 108.11159 * 124.37204 * 12 10 9 14 14 C 1.36943 * 125.30989 * 181.28726 * 13 12 10 15 15 H 1.08002 * 119.99788 * 359.97438 * 14 13 12 16 16 C 1.38811 * 119.99622 * 180.27725 * 14 13 12 17 17 N 1.31614 * 120.00467 * 359.72375 * 16 14 13 18 18 Si 1.86801 * 119.99700 * 179.72266 * 16 14 13 19 19 H 1.48501 * 109.46896 * 89.99850 * 18 16 14 20 20 H 1.48499 * 109.47039 * 210.00011 * 18 16 14 21 21 H 1.48501 * 109.47275 * 329.99811 * 18 16 14 22 22 C 1.46708 * 109.37838 * 1.54911 * 13 12 10 23 23 C 1.46711 * 125.58635 * 180.02562 * 7 5 4 24 24 H 1.09000 * 111.53364 * 56.04606 * 23 7 5 25 25 N 1.46500 * 109.47239 * 240.00027 * 2 1 3 26 26 C 1.46761 * 124.34726 * 119.72432 * 25 2 1 27 27 C 1.54663 * 105.37839 * 162.85531 * 26 25 2 28 28 C 1.54631 * 101.68497 * 25.76906 * 27 26 25 29 29 C 1.34422 * 124.34891 * 300.02713 * 25 2 1 30 30 O 1.21276 * 124.94550 * 0.38583 * 29 25 2 31 31 H 1.09004 * 109.47233 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47152 * 300.00119 * 1 2 3 33 33 H 1.09001 * 109.46972 * 59.99879 * 1 2 3 34 34 H 1.08999 * 109.47423 * 65.00036 * 4 2 1 35 35 H 1.08996 * 109.47387 * 304.99787 * 4 2 1 36 36 H 1.08999 * 110.37048 * 85.62040 * 8 7 5 37 37 H 1.09001 * 110.36990 * 323.29043 * 8 7 5 38 38 H 1.08992 * 110.97809 * 204.66152 * 9 8 7 39 39 H 1.09000 * 111.00369 * 80.89418 * 9 8 7 40 40 H 1.09003 * 109.74357 * 4.70244 * 12 10 9 41 41 H 1.08999 * 109.74625 * 244.04665 * 12 10 9 42 42 H 0.96995 * 120.00147 * 180.02562 * 17 16 14 43 43 H 1.09007 * 109.98447 * 101.13769 * 22 13 12 44 44 H 1.08994 * 109.98850 * 222.44530 * 22 13 12 45 45 H 1.08998 * 110.24822 * 281.98193 * 26 25 2 46 46 H 1.08997 * 110.24528 * 43.98864 * 26 25 2 47 47 H 1.08994 * 111.19121 * 267.59190 * 27 26 25 48 48 H 1.09001 * 110.84968 * 143.79497 * 27 26 25 49 49 H 1.08999 * 110.47918 * 216.30258 * 28 27 26 50 50 H 1.09003 * 110.48403 * 93.66539 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3128 6 8 4.1450 -0.0212 0.4442 7 7 4.2148 -1.1807 2.3343 8 6 3.6093 -1.9282 3.4511 9 6 4.6334 -1.8122 4.6069 10 6 5.9817 -1.8979 3.8436 11 1 6.8198 -1.4817 4.4024 12 6 6.2034 -3.3584 3.4172 13 7 6.4040 -3.3837 1.9653 14 6 6.6071 -4.5104 1.2139 15 1 6.6290 -5.4799 1.6894 16 6 6.7911 -4.4058 -0.1580 17 7 6.7650 -3.2243 -0.7373 18 14 7.0759 -5.9420 -1.1819 19 1 5.7706 -6.4751 -1.6480 20 1 7.9206 -5.6048 -2.3558 21 1 7.7629 -6.9672 -0.3559 22 6 6.3595 -2.0132 1.4438 23 6 5.6701 -1.1522 2.5177 24 1 6.0518 -0.1313 2.5312 25 7 2.0184 -0.6906 -1.1962 26 6 2.8608 -0.0695 -2.2249 27 6 3.4726 -1.2468 -3.0199 28 6 2.4201 -2.3570 -2.7948 29 6 1.7476 -1.9728 -1.4953 30 8 1.0640 -2.7140 -0.8214 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 1.7515 -1.7716 1.2056 35 1 1.6053 -0.2619 2.1370 36 1 3.4657 -2.9728 3.1748 37 1 2.6596 -1.4771 3.7389 38 1 4.5278 -2.6413 5.3065 39 1 4.5360 -0.8559 5.1207 40 1 5.3294 -3.9550 3.6786 41 1 7.0851 -3.7584 3.9179 42 1 6.8932 -3.1513 -1.6960 43 1 7.3715 -1.6500 1.2640 44 1 5.7835 -1.9850 0.5190 45 1 2.2559 0.5575 -2.8799 46 1 3.6504 0.5208 -1.7600 47 1 4.4401 -1.5377 -2.6110 48 1 3.5572 -0.9981 -4.0777 49 1 2.9049 -3.3287 -2.7008 50 1 1.6967 -2.3679 -3.6101 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076452907.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:37 Heat of formation + Delta-G solvation = -52.991969 kcal Electronic energy + Delta-G solvation = -32115.730720 eV Core-core repulsion = 28142.812176 eV Total energy + Delta-G solvation = -3972.918544 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.81984 -41.19542 -39.25296 -37.33199 -36.45358 -35.76254 -33.95861 -32.39915 -31.28681 -30.56343 -28.96187 -28.39046 -27.68951 -26.56180 -24.15168 -23.38239 -22.81214 -22.48079 -21.01154 -20.15361 -19.51877 -18.92345 -18.06665 -17.82496 -17.43246 -17.15631 -16.84491 -16.31397 -15.84122 -15.69998 -15.51723 -14.96241 -14.74533 -14.61175 -14.51809 -14.43155 -14.10912 -13.88650 -13.74771 -13.71244 -13.36244 -13.04144 -13.01599 -12.88987 -12.84395 -12.77808 -12.67118 -12.49095 -12.38194 -12.13498 -12.09868 -11.88122 -11.87363 -11.83490 -11.58104 -11.40024 -10.79330 -10.62046 -10.59507 -9.61098 -9.51540 -8.85415 -7.78030 -5.21034 1.38673 1.41244 1.48835 1.58561 1.74743 2.13493 2.17821 2.45292 3.31471 3.37681 3.44218 3.61273 3.65222 3.76639 3.78859 3.84882 3.99669 4.03541 4.13110 4.22690 4.24068 4.35493 4.45706 4.48188 4.51397 4.61351 4.64552 4.68634 4.69251 4.76126 4.80358 4.86670 4.92758 4.94582 4.99352 4.99935 5.13271 5.14933 5.26553 5.27945 5.29495 5.35188 5.45731 5.61685 5.73701 5.89647 6.22536 6.30736 6.71160 7.10102 7.21504 7.32548 7.80120 8.41033 9.23441 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009398 B = 0.006262 C = 0.004342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2978.707198 B = 4470.204930 C = 6446.536592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.166 3.834 3 H 0.105 0.895 4 C -0.145 4.145 5 C 0.519 3.481 6 O -0.566 6.566 7 N -0.605 5.605 8 C 0.097 3.903 9 C -0.104 4.104 10 C -0.099 4.099 11 H 0.122 0.878 12 C 0.135 3.865 13 N -0.619 5.619 14 C -0.244 4.244 15 H 0.078 0.922 16 C -0.061 4.061 17 N -0.935 5.935 18 Si 0.970 3.030 19 H -0.291 1.291 20 H -0.291 1.291 21 H -0.268 1.268 22 C 0.169 3.831 23 C 0.119 3.881 24 H 0.080 0.920 25 N -0.599 5.599 26 C 0.110 3.890 27 C -0.124 4.124 28 C -0.153 4.153 29 C 0.507 3.493 30 O -0.579 6.579 31 H 0.047 0.953 32 H 0.096 0.904 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.136 0.864 36 H 0.041 0.959 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.030 0.970 41 H 0.023 0.977 42 H 0.243 0.757 43 H -0.024 1.024 44 H 0.062 0.938 45 H 0.101 0.899 46 H 0.072 0.928 47 H 0.045 0.955 48 H 0.120 0.880 49 H 0.072 0.928 50 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.114 10.662 5.288 16.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.064 3.936 3 H 0.123 0.877 4 C -0.185 4.185 5 C 0.309 3.691 6 O -0.445 6.445 7 N -0.338 5.338 8 C -0.025 4.025 9 C -0.142 4.142 10 C -0.118 4.118 11 H 0.140 0.860 12 C 0.010 3.990 13 N -0.345 5.345 14 C -0.374 4.374 15 H 0.096 0.904 16 C -0.255 4.255 17 N -0.584 5.584 18 Si 0.798 3.202 19 H -0.218 1.218 20 H -0.217 1.217 21 H -0.193 1.193 22 C 0.043 3.957 23 C 0.014 3.986 24 H 0.098 0.902 25 N -0.331 5.331 26 C -0.012 4.012 27 C -0.161 4.161 28 C -0.193 4.193 29 C 0.296 3.704 30 O -0.460 6.460 31 H 0.066 0.934 32 H 0.115 0.885 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.154 0.846 36 H 0.059 0.941 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.123 0.877 40 H 0.047 0.953 41 H 0.041 0.959 42 H 0.052 0.948 43 H -0.006 1.006 44 H 0.080 0.920 45 H 0.119 0.881 46 H 0.091 0.909 47 H 0.064 0.936 48 H 0.138 0.862 49 H 0.091 0.909 50 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -12.170 10.628 4.996 16.912 hybrid contribution 0.956 -1.337 -0.957 1.902 sum -11.214 9.291 4.039 15.112 Atomic orbital electron populations 1.22084 0.92331 1.02629 1.04045 1.20896 0.95010 0.96211 0.81525 0.87689 1.22133 0.90602 1.03866 1.01932 1.20754 0.90655 0.77905 0.79806 1.90618 1.71160 1.44683 1.38043 1.48398 1.06865 1.53659 1.24883 1.22486 0.98490 0.95509 0.86026 1.22816 0.90724 1.04889 0.95778 1.23074 1.00278 0.94080 0.94386 0.86050 1.21430 0.97777 0.95597 0.84217 1.44428 1.84617 1.02678 1.02757 1.19352 1.41719 0.86455 0.89827 0.90431 1.25591 1.02579 0.99524 0.97798 1.70201 1.56901 1.22346 1.08938 0.85209 0.77233 0.79255 0.78467 1.21825 1.21722 1.19303 1.21321 0.94958 0.83117 0.96329 1.22379 0.81350 0.98335 0.96522 0.90204 1.48323 1.50204 1.11526 1.23015 1.22207 0.94058 0.95773 0.89142 1.22547 0.97079 0.93941 1.02577 1.22322 0.99842 1.00445 0.96706 1.21263 0.79533 0.81981 0.87659 1.90602 1.42290 1.55865 1.57230 0.93388 0.88523 0.91118 0.90171 0.84575 0.94067 0.87596 0.87719 0.87749 0.95258 0.95880 0.94751 1.00623 0.91958 0.88063 0.90922 0.93607 0.86203 0.90930 0.85105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 9.20 71.98 0.66 -2.51 16 2 C 0.17 4.40 2.43 44.99 0.11 4.51 16 3 H 0.11 2.53 7.88 -2.39 -0.02 2.52 16 4 C -0.15 -4.22 4.13 29.85 0.12 -4.09 16 5 C 0.52 19.49 7.35 87.66 0.64 20.14 16 6 O -0.57 -24.75 13.36 -3.04 -0.04 -24.79 16 7 N -0.60 -21.92 3.02 -785.34 -2.37 -24.28 16 8 C 0.10 2.69 6.23 86.84 0.54 3.24 16 9 C -0.10 -2.29 6.30 31.97 0.20 -2.09 16 10 C -0.10 -3.10 4.25 -9.01 -0.04 -3.14 16 11 H 0.12 3.20 8.14 -2.39 -0.02 3.18 16 12 C 0.13 5.49 6.41 86.62 0.56 6.04 16 13 N -0.62 -33.19 3.38 -697.93 -2.36 -35.55 16 14 C -0.24 -14.39 10.25 84.03 0.86 -13.53 16 15 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 16 C -0.06 -3.66 5.48 84.86 0.47 -3.20 16 17 N -0.94 -58.72 10.16 21.65 0.22 -58.50 16 18 Si 0.97 48.17 29.55 68.60 2.03 50.20 16 19 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 20 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 21 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 22 C 0.17 9.02 5.20 86.66 0.45 9.47 16 23 C 0.12 4.72 3.65 46.05 0.17 4.89 16 24 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 25 N -0.60 -18.81 2.20 -793.69 -1.74 -20.55 16 26 C 0.11 3.08 6.87 86.90 0.60 3.68 16 27 C -0.12 -3.70 7.19 31.72 0.23 -3.47 16 28 C -0.15 -4.88 6.86 30.59 0.21 -4.67 16 29 C 0.51 18.69 7.39 87.90 0.65 19.34 16 30 O -0.58 -24.83 15.07 -3.02 -0.05 -24.87 16 31 H 0.05 1.27 6.77 -2.38 -0.02 1.25 16 32 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.08 2.83 6.65 -2.39 -0.02 2.81 16 35 H 0.14 2.71 7.84 -2.39 -0.02 2.69 16 36 H 0.04 1.39 7.49 -2.39 -0.02 1.37 16 37 H 0.11 2.12 7.46 -2.39 -0.02 2.10 16 38 H 0.10 1.89 7.96 -2.39 -0.02 1.87 16 39 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.03 1.17 6.78 -2.39 -0.02 1.15 16 41 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.24 14.90 8.31 -92.71 -0.77 14.13 16 43 H -0.02 -1.44 8.14 -2.38 -0.02 -1.46 16 44 H 0.06 3.89 5.32 -2.39 -0.01 3.88 16 45 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.07 2.37 6.74 -2.39 -0.02 2.35 16 47 H 0.04 1.82 8.14 -2.39 -0.02 1.81 16 48 H 0.12 2.60 8.14 -2.39 -0.02 2.58 16 49 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 50 H 0.13 3.13 8.14 -2.39 -0.02 3.11 16 Total: -1.00 -83.38 381.96 3.04 -80.33 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: 0.92 Total: 23.43 kcal Atomic # 6 Polarization: 28.16 SS G_CDS: 6.43 Total: 34.59 kcal Atomic # 7 Polarization: -132.64 SS G_CDS: -6.25 Total: -138.89 kcal Atomic # 8 Polarization: -49.58 SS G_CDS: -0.09 Total: -49.67 kcal Atomic # 14 Polarization: 48.17 SS G_CDS: 2.03 Total: 50.20 kcal Total: -83.38 3.04 -80.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076452907.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.341 kcal (2) G-P(sol) polarization free energy of solvation -83.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds