Wall clock time and date at job start Tue Mar 31 2020 18:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 110.63886 * 2 1 4 4 C 1.54322 * 110.71995 * 236.66059 * 2 1 3 5 5 N 1.47016 * 107.26949 * 219.44144 * 4 2 1 6 6 C 1.36939 * 125.64924 * 178.97669 * 5 4 2 7 7 H 1.08007 * 119.99492 * 0.02562 * 6 5 4 8 8 C 1.38811 * 120.00449 * 180.02562 * 6 5 4 9 9 N 1.31619 * 119.99782 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00363 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.46637 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47059 * 119.99678 * 10 8 6 13 13 H 1.48491 * 109.47086 * 240.00084 * 10 8 6 14 14 C 1.47466 * 108.72525 * 358.97833 * 5 4 2 15 15 C 1.54905 * 104.81227 * 24.06952 * 14 5 4 16 16 H 1.08998 * 111.00718 * 81.13377 * 15 14 5 17 17 N 1.46502 * 111.00712 * 204.95190 * 15 14 5 18 18 C 1.34773 * 119.99860 * 270.41919 * 17 15 14 19 19 O 1.21280 * 120.00031 * 359.97438 * 18 17 15 20 20 C 1.50703 * 119.99861 * 179.97438 * 18 17 15 21 21 H 1.08992 * 109.20504 * 305.64766 * 20 18 17 22 22 C 1.53286 * 109.20487 * 64.99866 * 20 18 17 23 23 N 1.46791 * 108.50476 * 180.47229 * 22 20 18 24 24 C 1.49420 * 112.11139 * 193.75986 * 23 22 20 25 25 C 1.57026 * 99.32381 * 113.47761 * 24 23 22 26 26 C 1.55461 * 101.36469 * 315.69374 * 25 24 23 27 27 C 1.49508 * 107.61568 * 302.20318 * 23 22 20 28 28 C 1.52876 * 111.06388 * 200.45193 * 27 23 22 29 29 C 1.50165 * 114.93095 * 57.50728 * 27 23 22 30 30 O 1.42798 * 109.20619 * 186.33336 * 20 18 17 31 31 H 1.09000 * 109.47289 * 296.85514 * 1 2 3 32 32 H 1.08997 * 109.47624 * 56.86199 * 1 2 3 33 33 H 1.09003 * 109.46820 * 176.86261 * 1 2 3 34 34 H 1.08996 * 109.88487 * 338.86378 * 4 2 1 35 35 H 1.09004 * 109.87767 * 100.02448 * 4 2 1 36 36 H 0.97002 * 119.99947 * 180.02562 * 9 8 6 37 37 H 1.09004 * 110.34701 * 265.25076 * 14 5 4 38 38 H 1.08995 * 110.40693 * 142.91881 * 14 5 4 39 39 H 0.97009 * 119.99808 * 90.41643 * 17 15 14 40 40 H 1.08998 * 109.63138 * 300.18255 * 22 20 18 41 41 H 1.09008 * 109.63184 * 60.77246 * 22 20 18 42 42 H 1.09002 * 111.42713 * 355.95290 * 24 23 22 43 43 H 1.08997 * 111.42708 * 231.00405 * 24 23 22 44 44 H 1.09001 * 118.87524 * 180.44067 * 25 24 23 45 45 H 1.08996 * 114.71781 * 311.22396 * 26 25 24 46 46 H 1.09000 * 114.72239 * 176.91148 * 26 25 24 47 47 H 1.09006 * 114.70596 * 173.24111 * 28 27 23 48 48 H 1.09005 * 114.69654 * 307.48820 * 28 27 23 49 49 H 1.08997 * 109.70496 * 187.23842 * 29 27 23 50 50 H 1.09007 * 109.72848 * 66.65280 * 29 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0760 -0.7933 -1.2059 5 7 3.2445 -1.5519 -0.7363 6 6 4.0043 -2.3995 -1.4975 7 1 3.7615 -2.5546 -2.5385 8 6 5.0865 -3.0593 -0.9315 9 7 5.3820 -2.8706 0.3372 10 14 6.1234 -4.2149 -1.9701 11 1 5.5861 -4.2532 -3.3540 12 1 7.5272 -3.7313 -1.9969 13 1 6.0808 -5.5790 -1.3851 14 6 3.4632 -1.2494 0.6904 15 6 2.0790 -0.7933 1.2152 16 1 1.4448 -1.6507 1.4408 17 7 2.2214 0.0738 2.3874 18 6 2.2517 -0.4633 3.6232 19 8 2.1605 -1.6643 3.7648 20 6 2.3988 0.4287 4.8290 21 1 3.2840 1.0528 4.7074 22 6 1.1616 1.3260 4.9463 23 7 1.3259 2.1953 6.1177 24 6 0.0476 2.8653 6.5047 25 6 -0.1946 2.1697 7.8915 26 6 0.1251 0.6870 7.5505 27 6 1.5150 1.3150 7.3113 28 6 1.1948 2.0658 8.6040 29 6 2.6744 0.3651 7.2200 30 8 2.5518 -0.3802 5.9958 31 1 -0.3634 0.4642 0.9168 32 1 -0.3634 0.5617 -0.8605 33 1 -0.3633 -1.0262 -0.0562 34 1 1.3130 -1.4785 -1.5750 35 1 2.3740 -0.1058 -1.9975 36 1 6.1385 -3.3313 0.7327 37 1 4.1935 -0.4477 0.8001 38 1 3.7953 -2.1414 1.2215 39 1 2.2940 1.0345 2.2741 40 1 1.0651 1.9361 4.0482 41 1 0.2718 0.7087 5.0704 42 1 -0.7514 2.6363 5.7994 43 1 0.1801 3.9413 6.6167 44 1 -1.0828 2.4343 8.4651 45 1 -0.3651 0.3098 6.6530 46 1 0.0736 0.0031 8.3976 47 1 1.2008 1.4489 9.5026 48 1 1.7185 3.0146 8.7212 49 1 2.6576 -0.3180 8.0692 50 1 3.6096 0.9251 7.2172 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080164636.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:27 Heat of formation + Delta-G solvation = 6.119240 kcal Electronic energy + Delta-G solvation = -30479.829157 eV Core-core repulsion = 26509.473867 eV Total energy + Delta-G solvation = -3970.355289 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.16947 -41.08652 -39.39742 -38.23613 -35.73981 -34.90202 -34.18249 -32.18627 -30.99763 -30.39554 -29.17098 -27.39526 -26.54409 -25.78634 -25.19294 -24.49147 -22.40341 -21.66661 -21.34983 -20.99143 -19.92825 -18.95229 -18.42738 -18.08003 -17.13334 -16.97862 -16.87905 -16.66492 -16.21987 -15.75387 -15.59512 -15.45898 -15.05376 -14.73626 -14.42142 -14.36267 -14.22283 -14.01765 -13.87101 -13.67141 -13.50773 -13.38454 -13.06246 -12.87331 -12.79007 -12.62755 -12.38114 -12.17144 -12.09293 -12.04296 -11.86525 -11.85608 -11.67584 -11.65130 -11.42785 -11.17081 -10.84669 -10.79604 -10.64492 -10.05800 -9.67443 -8.91996 -7.78614 -5.25645 1.43093 1.45694 1.47981 1.56005 1.73581 2.47350 2.60169 2.82784 3.26174 3.30989 3.34272 3.46155 3.47812 3.62767 3.68752 3.78492 3.87584 3.95194 3.99465 4.02780 4.08531 4.24446 4.38094 4.49738 4.50702 4.53817 4.60922 4.61673 4.65046 4.68533 4.80638 4.86024 4.88630 4.90790 4.96187 5.02765 5.07798 5.08472 5.15223 5.18632 5.25863 5.44037 5.46008 5.49075 5.59616 5.73308 5.78821 5.94076 6.26531 6.53786 7.05174 7.22143 7.75099 8.37412 9.22010 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019802 B = 0.002820 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.651652 B = 9925.890394 C =10974.398548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.091 4.091 3 H 0.101 0.899 4 C 0.132 3.868 5 N -0.627 5.627 6 C -0.238 4.238 7 H 0.087 0.913 8 C -0.073 4.073 9 N -0.950 5.950 10 Si 0.983 3.017 11 H -0.261 1.261 12 H -0.291 1.291 13 H -0.295 1.295 14 C 0.156 3.844 15 C 0.138 3.862 16 H 0.065 0.935 17 N -0.693 5.693 18 C 0.515 3.485 19 O -0.571 6.571 20 C 0.088 3.912 21 H 0.101 0.899 22 C 0.022 3.978 23 N -0.477 5.477 24 C 0.032 3.968 25 C -0.131 4.131 26 C -0.181 4.181 27 C -0.004 4.004 28 C -0.095 4.095 29 C 0.085 3.915 30 O -0.387 6.387 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.043 0.957 34 H 0.031 0.969 35 H 0.035 0.965 36 H 0.244 0.756 37 H -0.007 1.007 38 H 0.058 0.942 39 H 0.416 0.584 40 H 0.117 0.883 41 H 0.048 0.952 42 H 0.076 0.924 43 H 0.108 0.892 44 H 0.130 0.870 45 H 0.048 0.952 46 H 0.102 0.898 47 H 0.119 0.881 48 H 0.083 0.917 49 H 0.119 0.881 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.965 17.698 15.907 27.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.111 4.111 3 H 0.120 0.880 4 C 0.007 3.993 5 N -0.354 5.354 6 C -0.367 4.367 7 H 0.105 0.895 8 C -0.265 4.265 9 N -0.600 5.600 10 Si 0.811 3.189 11 H -0.185 1.185 12 H -0.218 1.218 13 H -0.223 1.223 14 C 0.029 3.971 15 C 0.032 3.968 16 H 0.083 0.917 17 N -0.346 5.346 18 C 0.301 3.699 19 O -0.448 6.448 20 C 0.026 3.974 21 H 0.119 0.881 22 C -0.107 4.107 23 N -0.200 5.200 24 C -0.095 4.095 25 C -0.149 4.149 26 C -0.219 4.219 27 C -0.094 4.094 28 C -0.132 4.132 29 C 0.009 3.991 30 O -0.305 6.305 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.063 0.937 34 H 0.049 0.951 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.011 0.989 38 H 0.076 0.924 39 H 0.253 0.747 40 H 0.135 0.865 41 H 0.066 0.934 42 H 0.094 0.906 43 H 0.126 0.874 44 H 0.148 0.852 45 H 0.067 0.933 46 H 0.120 0.880 47 H 0.137 0.863 48 H 0.101 0.899 49 H 0.136 0.864 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.392 16.927 15.800 26.750 hybrid contribution 0.479 -1.197 -0.552 1.403 sum -12.913 15.731 15.248 25.430 Atomic orbital electron populations 1.21703 0.91873 1.01935 1.03189 1.22382 0.97517 0.99118 0.92053 0.88041 1.21619 0.88566 0.93338 0.95733 1.44720 1.32116 1.50906 1.07640 1.19541 1.06395 1.17150 0.93593 0.89476 1.25752 1.00535 1.02648 0.97583 1.70142 1.30125 1.47116 1.12587 0.84940 0.78028 0.77731 0.78231 1.18470 1.21778 1.22259 1.21885 0.92047 0.98234 0.84938 1.22178 0.97262 0.92922 0.84440 0.91687 1.45544 1.73721 1.11055 1.04243 1.20669 0.75795 0.88497 0.84973 1.90730 1.49877 1.17625 1.86596 1.21805 1.00468 0.90548 0.84585 0.88145 1.22957 0.95543 0.95107 0.97098 1.67245 1.31340 1.20741 1.00718 1.23964 0.90190 1.00482 0.94865 1.24910 0.99342 0.94087 0.96589 1.24598 0.97616 0.97760 1.01943 1.23603 0.95734 0.95482 0.94571 1.23336 0.95314 1.00724 0.93868 1.22106 0.96919 0.93949 0.86169 1.88194 1.94105 1.33478 1.14764 0.91080 0.90130 0.93746 0.95130 0.94658 0.94664 0.98934 0.92372 0.74672 0.86483 0.93395 0.90578 0.87354 0.85249 0.93288 0.87982 0.86329 0.89885 0.86354 0.91309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 9.16 71.98 0.66 -2.41 16 2 C -0.09 -2.86 3.19 -9.60 -0.03 -2.89 16 3 H 0.10 2.67 7.99 -2.38 -0.02 2.65 16 4 C 0.13 5.35 6.84 86.73 0.59 5.95 16 5 N -0.63 -33.54 3.40 -691.90 -2.35 -35.89 16 6 C -0.24 -13.83 10.27 84.03 0.86 -12.96 16 7 H 0.09 4.78 7.83 -2.91 -0.02 4.76 16 8 C -0.07 -4.36 5.49 84.86 0.47 -3.89 16 9 N -0.95 -60.88 10.09 21.65 0.22 -60.67 16 10 Si 0.98 47.82 29.55 68.60 2.03 49.85 16 11 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 12 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 13 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 14 C 0.16 8.21 5.58 86.85 0.48 8.69 16 15 C 0.14 5.49 2.81 46.38 0.13 5.62 16 16 H 0.06 2.96 7.54 -2.39 -0.02 2.94 16 17 N -0.69 -22.10 5.17 -435.96 -2.25 -24.36 16 18 C 0.52 18.82 7.16 87.66 0.63 19.45 16 19 O -0.57 -27.86 16.19 16.08 0.26 -27.60 16 20 C 0.09 2.45 3.13 29.94 0.09 2.54 16 21 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 22 C 0.02 0.46 4.67 86.42 0.40 0.86 16 23 N -0.48 -8.43 6.03 -875.18 -5.27 -13.70 16 24 C 0.03 0.40 7.02 87.23 0.61 1.02 16 25 C -0.13 -1.45 6.40 -15.58 -0.10 -1.55 16 26 C -0.18 -2.99 7.01 28.38 0.20 -2.79 16 27 C 0.00 -0.06 1.59 -5.73 -0.01 -0.07 16 28 C -0.10 -1.03 7.81 28.24 0.22 -0.81 16 29 C 0.08 1.80 6.72 71.07 0.48 2.28 16 30 O -0.39 -12.21 9.99 -129.87 -1.30 -13.51 16 31 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.04 1.18 8.06 -2.39 -0.02 1.16 16 34 H 0.03 1.22 7.76 -2.39 -0.02 1.20 16 35 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.24 15.27 8.31 -92.71 -0.77 14.49 16 37 H -0.01 -0.40 8.14 -2.38 -0.02 -0.42 16 38 H 0.06 3.73 5.87 -2.39 -0.01 3.72 16 39 H 0.42 9.58 8.31 -92.70 -0.77 8.81 16 40 H 0.12 1.86 7.91 -2.39 -0.02 1.84 16 41 H 0.05 1.11 5.97 -2.38 -0.01 1.10 16 42 H 0.08 0.92 7.73 -2.39 -0.02 0.90 16 43 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.05 1.04 6.08 -2.39 -0.01 1.03 16 46 H 0.10 1.50 7.85 -2.39 -0.02 1.48 16 47 H 0.12 0.90 7.85 -2.38 -0.02 0.88 16 48 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 49 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 50 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 Total: -1.00 -82.61 383.08 -2.81 -85.41 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: 0.17 Total: 21.44 kcal Atomic # 6 Polarization: 13.33 SS G_CDS: 5.69 Total: 19.03 kcal Atomic # 7 Polarization: -124.96 SS G_CDS: -9.66 Total: -134.62 kcal Atomic # 8 Polarization: -40.07 SS G_CDS: -1.04 Total: -41.11 kcal Atomic # 14 Polarization: 47.82 SS G_CDS: 2.03 Total: 49.85 kcal Total: -82.61 -2.81 -85.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080164636.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.534 kcal (2) G-P(sol) polarization free energy of solvation -82.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds