Wall clock time and date at job start Tue Mar 31 2020 18:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09008 * 110.91416 * 2 1 4 4 C 1.54908 * 111.00391 * 236.10539 * 2 1 3 5 5 N 1.47422 * 104.83054 * 204.91757 * 4 2 1 6 6 C 1.36939 * 125.64770 * 204.16743 * 5 4 2 7 7 H 1.08004 * 119.99885 * 354.82259 * 6 5 4 8 8 C 1.38806 * 120.00197 * 174.83576 * 6 5 4 9 9 N 1.31621 * 120.00031 * 7.05762 * 8 6 5 10 10 Si 1.86801 * 119.99955 * 187.05805 * 8 6 5 11 11 H 1.48504 * 109.47084 * 94.98571 * 10 8 6 12 12 H 1.48506 * 109.47218 * 214.98136 * 10 8 6 13 13 H 1.48494 * 109.47107 * 334.98410 * 10 8 6 14 14 C 1.47021 * 108.70533 * 24.12050 * 5 4 2 15 15 C 1.54322 * 107.26980 * 358.94671 * 14 5 4 16 16 H 1.08993 * 110.72191 * 96.34763 * 15 14 5 17 17 N 1.46505 * 110.71838 * 219.44149 * 15 14 5 18 18 C 1.34776 * 119.99939 * 273.54734 * 17 15 14 19 19 O 1.21285 * 119.99992 * 0.02562 * 18 17 15 20 20 C 1.50696 * 120.00358 * 180.02562 * 18 17 15 21 21 H 1.09004 * 109.19743 * 54.34534 * 20 18 17 22 22 C 1.53280 * 109.20509 * 295.00091 * 20 18 17 23 23 N 1.46789 * 108.51247 * 179.57397 * 22 20 18 24 24 C 1.49520 * 112.07211 * 166.21403 * 23 22 20 25 25 C 1.57026 * 99.32955 * 246.56670 * 24 23 22 26 26 C 1.55452 * 101.36754 * 44.25682 * 25 24 23 27 27 C 1.49517 * 107.60288 * 57.79229 * 23 22 20 28 28 C 1.52883 * 111.06520 * 159.52392 * 27 23 22 29 29 C 1.50157 * 114.92927 * 302.47581 * 27 23 22 30 30 O 1.42793 * 109.17323 * 173.67775 * 20 18 17 31 31 H 1.09010 * 109.46854 * 296.09307 * 1 2 3 32 32 H 1.08995 * 109.47233 * 56.09089 * 1 2 3 33 33 H 1.08997 * 109.47107 * 176.09724 * 1 2 3 34 34 H 1.08992 * 110.37227 * 86.07477 * 4 2 1 35 35 H 1.09005 * 110.45802 * 323.79788 * 4 2 1 36 36 H 0.97000 * 120.00067 * 180.02562 * 9 8 6 37 37 H 1.08998 * 109.88284 * 239.52403 * 14 5 4 38 38 H 1.09000 * 109.87852 * 118.36002 * 14 5 4 39 39 H 0.96994 * 120.00003 * 93.54660 * 17 15 14 40 40 H 1.09000 * 109.63305 * 59.86896 * 22 20 18 41 41 H 1.09003 * 109.79478 * 299.37865 * 22 20 18 42 42 H 1.08994 * 111.45732 * 129.01985 * 24 23 22 43 43 H 1.08995 * 111.38936 * 4.07540 * 24 23 22 44 44 H 1.09005 * 118.87302 * 179.51645 * 25 24 23 45 45 H 1.09003 * 114.72074 * 183.09263 * 26 25 24 46 46 H 1.09001 * 114.72220 * 48.83099 * 26 25 24 47 47 H 1.09000 * 114.69905 * 52.51292 * 28 27 23 48 48 H 1.08993 * 114.69726 * 186.71342 * 28 27 23 49 49 H 1.09000 * 109.70216 * 172.78896 * 29 27 23 50 50 H 1.09001 * 109.70219 * 293.38864 * 29 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0183 0.0000 4 6 2.0853 -0.8065 -1.2004 5 7 3.4271 -1.2430 -0.7734 6 6 4.4645 -1.5651 -1.6073 7 1 4.3104 -1.5903 -2.6760 8 6 5.7139 -1.8596 -1.0791 9 7 5.8692 -1.9658 0.2236 10 14 7.1747 -2.1052 -2.2170 11 1 7.9221 -0.8284 -2.3457 12 1 8.0700 -3.1483 -1.6551 13 1 6.6935 -2.5341 -3.5548 14 6 3.4675 -1.2741 0.6959 15 6 2.0862 -0.8079 1.2021 16 1 1.4480 -1.6632 1.4238 17 7 2.2287 0.0495 2.3815 18 6 2.3023 -0.5006 3.6096 19 8 2.2510 -1.7054 3.7385 20 6 2.4483 0.3814 4.8228 21 1 1.6463 1.1195 4.8280 22 6 3.7985 1.1044 4.7610 23 7 3.9204 1.9659 5.9432 24 6 5.3201 2.4524 6.1420 25 6 5.6620 1.7045 7.4797 26 6 5.0992 0.2848 7.1894 27 6 3.7866 1.0964 7.1522 28 6 4.3855 1.7735 8.3851 29 6 2.5091 0.3109 7.2286 30 8 2.3555 -0.4214 6.0001 31 1 -0.3633 0.4520 0.9230 32 1 -0.3633 0.5733 -0.8528 33 1 -0.3633 -1.0253 -0.0699 34 1 2.1560 -0.1719 -2.0837 35 1 1.4525 -1.6703 -1.4044 36 1 6.7424 -2.1712 0.5928 37 1 4.2427 -0.5997 1.0598 38 1 3.6651 -2.2893 1.0398 39 1 2.2701 1.0131 2.2783 40 1 3.8471 1.7128 3.8580 41 1 4.6081 0.3745 4.7548 42 1 5.3517 3.5342 6.2713 43 1 5.9716 2.1320 5.3290 44 1 6.6509 1.8369 7.9189 45 1 5.1785 -0.4158 8.0207 46 1 5.4011 -0.1381 6.2312 47 1 4.0161 2.7811 8.5759 48 1 4.4238 1.1463 9.2757 49 1 2.5545 -0.3838 8.0673 50 1 1.6670 0.9906 7.3590 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080164637.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:31 Heat of formation + Delta-G solvation = 4.801829 kcal Electronic energy + Delta-G solvation = -30711.750291 eV Core-core repulsion = 26741.337875 eV Total energy + Delta-G solvation = -3970.412417 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.18499 -41.11576 -39.40109 -38.23732 -35.73236 -34.91938 -34.16927 -32.20306 -31.00660 -30.42243 -29.20692 -27.38773 -26.57110 -25.80956 -25.20635 -24.51266 -22.46588 -21.60253 -21.39263 -21.04720 -19.93948 -18.90989 -18.44428 -18.10231 -17.14041 -17.03038 -16.83374 -16.68587 -16.23338 -15.74693 -15.65768 -15.49303 -15.06844 -14.85548 -14.64056 -14.29518 -14.10041 -14.03142 -13.83383 -13.63961 -13.53008 -13.35919 -13.06592 -12.88020 -12.82192 -12.62177 -12.43098 -12.20305 -12.12602 -12.07587 -11.89517 -11.85438 -11.69796 -11.66488 -11.47109 -11.20422 -10.86449 -10.75344 -10.65635 -10.08760 -9.75196 -8.95045 -7.88380 -5.25451 1.42077 1.44451 1.45186 1.53906 1.73546 2.46421 2.56070 2.82541 3.22957 3.29630 3.31647 3.43168 3.44612 3.57528 3.68405 3.75076 3.82112 3.94016 3.97214 4.03688 4.09181 4.20509 4.33707 4.46763 4.50055 4.53206 4.60035 4.60312 4.65134 4.71399 4.76997 4.83966 4.85503 4.88230 4.93125 5.06240 5.06894 5.07506 5.11831 5.16681 5.28496 5.41471 5.41920 5.49553 5.57618 5.64973 5.73986 5.93560 6.13586 6.50976 7.03054 7.19321 7.73043 8.37254 9.21248 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012262 B = 0.003493 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.997649 B = 8014.045181 C = 9530.733667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.091 4.091 3 H 0.096 0.904 4 C 0.131 3.869 5 N -0.628 5.628 6 C -0.242 4.242 7 H 0.089 0.911 8 C -0.068 4.068 9 N -0.953 5.953 10 Si 0.979 3.021 11 H -0.283 1.283 12 H -0.300 1.300 13 H -0.263 1.263 14 C 0.189 3.811 15 C 0.137 3.863 16 H 0.071 0.929 17 N -0.694 5.694 18 C 0.515 3.485 19 O -0.571 6.571 20 C 0.094 3.906 21 H 0.119 0.881 22 C 0.017 3.983 23 N -0.467 5.467 24 C 0.028 3.972 25 C -0.135 4.135 26 C -0.188 4.188 27 C -0.001 4.001 28 C -0.086 4.086 29 C 0.087 3.913 30 O -0.385 6.385 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.050 0.950 34 H 0.058 0.942 35 H 0.025 0.975 36 H 0.243 0.757 37 H 0.019 0.981 38 H -0.017 1.017 39 H 0.415 0.585 40 H 0.106 0.894 41 H 0.030 0.970 42 H 0.113 0.887 43 H 0.060 0.940 44 H 0.127 0.873 45 H 0.106 0.894 46 H 0.035 0.965 47 H 0.089 0.911 48 H 0.123 0.877 49 H 0.121 0.879 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.942 14.733 15.862 23.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.111 4.111 3 H 0.114 0.886 4 C 0.006 3.994 5 N -0.354 5.354 6 C -0.371 4.371 7 H 0.107 0.893 8 C -0.261 4.261 9 N -0.601 5.601 10 Si 0.807 3.193 11 H -0.210 1.210 12 H -0.227 1.227 13 H -0.188 1.188 14 C 0.063 3.937 15 C 0.031 3.969 16 H 0.089 0.911 17 N -0.347 5.347 18 C 0.300 3.700 19 O -0.448 6.448 20 C 0.032 3.968 21 H 0.137 0.863 22 C -0.113 4.113 23 N -0.191 5.191 24 C -0.099 4.099 25 C -0.154 4.154 26 C -0.227 4.227 27 C -0.091 4.091 28 C -0.123 4.123 29 C 0.011 3.989 30 O -0.304 6.304 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.043 0.957 36 H 0.052 0.948 37 H 0.038 0.962 38 H 0.001 0.999 39 H 0.253 0.747 40 H 0.124 0.876 41 H 0.048 0.952 42 H 0.131 0.869 43 H 0.078 0.922 44 H 0.145 0.855 45 H 0.124 0.876 46 H 0.053 0.947 47 H 0.107 0.893 48 H 0.141 0.859 49 H 0.139 0.861 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.275 14.080 15.827 22.742 hybrid contribution 2.121 -1.084 -0.784 2.508 sum -6.154 12.996 15.043 20.810 Atomic orbital electron populations 1.21668 0.91536 1.02296 1.03220 1.22541 0.97401 0.98963 0.92196 0.88618 1.21880 0.85128 0.95820 0.96533 1.44744 1.09780 1.79025 1.01865 1.19531 0.88247 1.39335 0.90005 0.89305 1.25735 1.00578 1.02374 0.97381 1.70270 1.22324 1.55980 1.11566 0.85046 0.78994 0.77000 0.78250 1.21007 1.22697 1.18774 1.21091 0.92741 0.96251 0.83650 1.22078 0.96492 0.93586 0.84723 0.91052 1.45624 1.73678 1.10860 1.04500 1.20686 0.75690 0.88526 0.85056 1.90713 1.50233 1.17207 1.86684 1.21758 0.99073 0.91536 0.84436 0.86322 1.22926 0.95732 0.95959 0.96657 1.67303 1.25154 1.26585 1.00050 1.23972 0.88025 1.01745 0.96181 1.24951 1.00066 0.94209 0.96138 1.24664 0.98823 0.97638 1.01568 1.23661 0.95164 0.95286 0.95031 1.23329 0.93254 1.01889 0.93822 1.22141 0.95368 0.95430 0.85949 1.88183 1.93276 1.35234 1.13662 0.91156 0.90139 0.93134 0.92356 0.95749 0.94758 0.96242 0.99850 0.74741 0.87618 0.95196 0.86875 0.92177 0.85545 0.87608 0.94652 0.89269 0.85917 0.86081 0.90055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 9.31 71.98 0.67 -2.31 16 2 C -0.09 -2.86 3.25 -9.40 -0.03 -2.89 16 3 H 0.10 2.71 8.00 -2.38 -0.02 2.69 16 4 C 0.13 5.22 6.70 86.86 0.58 5.81 16 5 N -0.63 -33.15 3.39 -692.01 -2.35 -35.50 16 6 C -0.24 -13.90 10.26 84.03 0.86 -13.04 16 7 H 0.09 4.79 7.84 -2.91 -0.02 4.77 16 8 C -0.07 -4.01 5.48 84.86 0.46 -3.54 16 9 N -0.95 -60.67 10.36 21.65 0.22 -60.44 16 10 Si 0.98 47.04 29.56 68.60 2.03 49.07 16 11 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 12 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 13 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 14 C 0.19 10.04 5.13 86.73 0.44 10.49 16 15 C 0.14 5.39 2.70 46.18 0.12 5.52 16 16 H 0.07 3.07 7.60 -2.39 -0.02 3.05 16 17 N -0.69 -22.61 5.09 -436.93 -2.22 -24.84 16 18 C 0.51 18.93 7.16 87.66 0.63 19.56 16 19 O -0.57 -27.55 16.22 16.08 0.26 -27.29 16 20 C 0.09 2.64 3.13 29.94 0.09 2.74 16 21 H 0.12 2.59 8.14 -2.38 -0.02 2.57 16 22 C 0.02 0.45 4.67 86.42 0.40 0.85 16 23 N -0.47 -10.02 6.03 -874.01 -5.27 -15.29 16 24 C 0.03 0.52 7.03 87.21 0.61 1.14 16 25 C -0.14 -2.14 6.41 -15.37 -0.10 -2.24 16 26 C -0.19 -4.09 7.00 28.38 0.20 -3.89 16 27 C 0.00 -0.02 1.59 -5.58 -0.01 -0.03 16 28 C -0.09 -1.07 7.81 28.31 0.22 -0.85 16 29 C 0.09 1.77 6.72 71.07 0.48 2.25 16 30 O -0.39 -11.85 9.99 -129.85 -1.30 -13.15 16 31 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 32 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.05 1.24 8.08 -2.39 -0.02 1.22 16 34 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.02 0.97 7.99 -2.38 -0.02 0.95 16 36 H 0.24 15.18 8.31 -92.71 -0.77 14.41 16 37 H 0.02 1.14 7.18 -2.39 -0.02 1.12 16 38 H -0.02 -1.08 7.61 -2.39 -0.02 -1.10 16 39 H 0.42 10.18 8.29 -92.71 -0.77 9.41 16 40 H 0.11 2.56 7.91 -2.39 -0.02 2.54 16 41 H 0.03 1.01 5.97 -2.39 -0.01 0.99 16 42 H 0.11 1.66 8.14 -2.39 -0.02 1.65 16 43 H 0.06 1.30 7.72 -2.39 -0.02 1.28 16 44 H 0.13 1.58 8.14 -2.38 -0.02 1.56 16 45 H 0.11 1.98 7.85 -2.39 -0.02 1.96 16 46 H 0.03 1.05 6.09 -2.39 -0.01 1.03 16 47 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.12 1.04 7.85 -2.39 -0.02 1.02 16 49 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 50 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -82.32 383.87 -2.81 -85.14 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: 0.17 Total: 22.75 kcal Atomic # 6 Polarization: 13.91 SS G_CDS: 5.65 Total: 19.56 kcal Atomic # 7 Polarization: -126.45 SS G_CDS: -9.62 Total: -136.07 kcal Atomic # 8 Polarization: -39.40 SS G_CDS: -1.04 Total: -40.44 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.07 kcal Total: -82.32 -2.81 -85.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080164637.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.937 kcal (2) G-P(sol) polarization free energy of solvation -82.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds