Wall clock time and date at job start Tue Mar 31 2020 18:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08996 * 110.77723 * 2 1 4 4 C 1.54320 * 110.71806 * 236.76335 * 2 1 3 5 5 N 1.47027 * 107.26851 * 219.44193 * 4 2 1 6 6 C 1.36939 * 125.64744 * 178.98607 * 5 4 2 7 7 H 1.07996 * 120.00332 * 348.80692 * 6 5 4 8 8 C 1.38810 * 119.99830 * 168.80962 * 6 5 4 9 9 N 1.31621 * 119.99993 * 350.94790 * 8 6 5 10 10 Si 1.86796 * 120.00076 * 170.94391 * 8 6 5 11 11 H 1.48500 * 109.47200 * 94.56191 * 10 8 6 12 12 H 1.48505 * 109.47645 * 214.56261 * 10 8 6 13 13 H 1.48506 * 109.47143 * 334.56180 * 10 8 6 14 14 C 1.47423 * 108.70258 * 358.94211 * 5 4 2 15 15 C 1.54905 * 104.83417 * 24.12861 * 14 5 4 16 16 H 1.09000 * 111.00418 * 81.06546 * 15 14 5 17 17 N 1.46501 * 111.00405 * 204.92019 * 15 14 5 18 18 C 1.34780 * 119.99910 * 267.19483 * 17 15 14 19 19 O 1.21283 * 119.99610 * 359.97438 * 18 17 15 20 20 C 1.50700 * 120.00186 * 180.02562 * 18 17 15 21 21 H 1.09002 * 110.32414 * 28.45872 * 20 18 17 22 22 C 1.54908 * 110.36675 * 266.22102 * 20 18 17 23 23 C 1.55157 * 101.58065 * 204.15221 * 22 20 18 24 24 C 1.54319 * 102.94407 * 35.49970 * 23 22 20 25 25 N 1.47024 * 107.27095 * 337.80896 * 24 23 22 26 26 C 1.34779 * 125.64649 * 178.97338 * 25 24 23 27 27 O 1.21280 * 119.99804 * 184.35133 * 26 25 24 28 28 C 1.50695 * 120.00039 * 4.35735 * 26 25 24 29 29 C 1.53000 * 117.49834 * 248.74320 * 28 26 25 30 30 C 1.53000 * 117.49847 * 180.08281 * 28 26 25 31 31 H 1.09003 * 109.46755 * 296.75967 * 1 2 3 32 32 H 1.08993 * 109.47535 * 56.76318 * 1 2 3 33 33 H 1.09002 * 109.46536 * 176.76367 * 1 2 3 34 34 H 1.09000 * 109.88646 * 338.85620 * 4 2 1 35 35 H 1.08996 * 109.88865 * 99.86945 * 4 2 1 36 36 H 0.97003 * 119.99380 * 180.02562 * 9 8 6 37 37 H 1.09007 * 110.36415 * 265.29059 * 14 5 4 38 38 H 1.09002 * 110.36860 * 142.96727 * 14 5 4 39 39 H 0.96997 * 120.00158 * 87.19787 * 17 15 14 40 40 H 1.09005 * 111.00262 * 322.22757 * 22 20 18 41 41 H 1.09002 * 111.00336 * 86.03866 * 22 20 18 42 42 H 1.09002 * 110.71433 * 153.86842 * 23 22 20 43 43 H 1.08998 * 110.71748 * 277.13181 * 23 22 20 44 44 H 1.09003 * 109.88294 * 97.22201 * 24 23 22 45 45 H 1.09001 * 109.88633 * 218.23486 * 24 23 22 46 46 H 1.08996 * 115.55186 * 34.41527 * 28 26 25 47 47 H 1.09006 * 117.49574 * 0.02562 * 29 28 26 48 48 H 1.08998 * 117.49926 * 145.02207 * 29 28 26 49 49 H 1.09000 * 117.50307 * 214.97704 * 30 28 26 50 50 H 1.09000 * 117.49729 * 359.97438 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0760 -0.7911 -1.2073 5 7 3.2446 -1.5507 -0.7390 6 6 4.0045 -2.3967 -1.5019 7 1 3.6637 -2.6921 -2.4832 8 6 5.2128 -2.8748 -1.0138 9 7 5.7148 -2.3814 0.0984 10 14 6.1263 -4.2185 -1.9354 11 1 7.1303 -3.6034 -2.8403 12 1 6.8140 -5.1060 -0.9633 13 1 5.1609 -5.0145 -2.7352 14 6 3.4633 -1.2497 0.6875 15 6 2.0790 -0.7955 1.2138 16 1 1.4453 -1.6536 1.4375 17 7 2.2216 0.0696 2.3875 18 6 2.1874 -0.4628 3.6252 19 8 2.0383 -1.6580 3.7672 20 6 2.3335 0.4272 4.8326 21 1 1.9637 1.4285 4.6118 22 6 3.8145 0.4864 5.2827 23 6 3.6699 0.8628 6.7810 24 6 2.3894 0.1125 7.2038 25 7 1.6120 -0.1465 5.9831 26 6 0.4344 -0.7996 5.9255 27 8 -0.0819 -1.0255 4.8516 28 6 -0.2407 -1.2491 7.1956 29 6 -0.3113 -2.7538 7.4638 30 6 -1.5744 -1.9872 7.0636 31 1 -0.3633 0.4627 0.9176 32 1 -0.3634 0.5632 -0.8595 33 1 -0.3632 -1.0261 -0.0580 34 1 1.3130 -1.4758 -1.5776 35 1 2.3715 -0.1026 -1.9988 36 1 6.5594 -2.7154 0.4392 37 1 4.1932 -0.4477 0.7984 38 1 3.7961 -2.1426 1.2169 39 1 2.3404 1.0256 2.2738 40 1 4.2967 -0.4845 5.1685 41 1 4.3584 1.2571 4.7363 42 1 4.5294 0.5110 7.3516 43 1 3.5426 1.9390 6.8976 44 1 2.6533 -0.8307 7.6823 45 1 1.8094 0.7275 7.8919 46 1 -0.1130 -0.5903 8.0545 47 1 0.1310 -3.4185 6.7217 48 1 -0.2304 -3.0848 8.4991 49 1 -2.3240 -1.8143 7.8359 50 1 -1.9637 -2.1473 6.0581 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080570199.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:14 Heat of formation + Delta-G solvation = -38.680162 kcal Electronic energy + Delta-G solvation = -30493.470458 eV Core-core repulsion = 26521.172521 eV Total energy + Delta-G solvation = -3972.297937 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.81337 -40.44564 -39.26539 -38.25004 -36.91357 -35.62971 -34.33093 -32.69341 -32.24742 -30.98536 -29.22758 -27.44714 -26.26143 -25.49508 -23.94868 -23.36712 -22.77414 -22.11271 -21.64791 -21.12518 -19.84482 -18.92628 -18.72106 -18.29471 -17.34889 -17.03060 -16.76999 -16.20843 -15.88983 -15.73329 -15.56409 -15.35460 -15.03372 -14.55583 -14.50333 -14.34477 -14.28672 -14.08470 -13.95795 -13.59683 -13.34506 -13.21825 -13.06677 -12.91580 -12.73465 -12.66841 -12.49657 -12.27219 -12.22813 -12.07172 -11.90334 -11.75207 -11.72658 -11.53260 -11.51950 -11.46612 -10.87085 -10.83504 -10.74376 -9.98865 -9.65263 -8.91451 -7.92582 -5.29394 1.40452 1.44052 1.46560 1.53248 1.58720 1.93264 2.24958 2.46638 2.91719 3.27054 3.35552 3.55799 3.61963 3.67762 3.74316 3.84533 3.88625 3.95238 3.96832 4.03364 4.06388 4.14890 4.22510 4.44369 4.47360 4.55445 4.59137 4.69068 4.75768 4.81502 4.83351 4.85098 4.90688 4.95646 4.99300 5.02776 5.08589 5.15104 5.18644 5.23052 5.30083 5.34329 5.37827 5.42466 5.54065 5.70530 6.13803 6.45320 6.63910 7.00703 7.17678 7.39384 7.69726 8.36138 9.18832 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012975 B = 0.003255 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.537150 B = 8601.067054 C = 9096.082849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.092 4.092 3 H 0.102 0.898 4 C 0.134 3.866 5 N -0.626 5.626 6 C -0.249 4.249 7 H 0.082 0.918 8 C -0.065 4.065 9 N -0.946 5.946 10 Si 0.980 3.020 11 H -0.278 1.278 12 H -0.295 1.295 13 H -0.269 1.269 14 C 0.189 3.811 15 C 0.140 3.860 16 H 0.053 0.947 17 N -0.702 5.702 18 C 0.507 3.493 19 O -0.574 6.574 20 C 0.118 3.882 21 H 0.123 0.877 22 C -0.122 4.122 23 C -0.114 4.114 24 C 0.095 3.905 25 N -0.607 5.607 26 C 0.540 3.460 27 O -0.573 6.573 28 C -0.184 4.184 29 C -0.149 4.149 30 C -0.149 4.149 31 H 0.060 0.940 32 H 0.083 0.917 33 H 0.039 0.961 34 H 0.028 0.972 35 H 0.036 0.964 36 H 0.247 0.753 37 H 0.010 0.990 38 H 0.011 0.989 39 H 0.413 0.587 40 H 0.050 0.950 41 H 0.114 0.886 42 H 0.103 0.897 43 H 0.111 0.889 44 H 0.070 0.930 45 H 0.106 0.894 46 H 0.162 0.838 47 H 0.064 0.936 48 H 0.140 0.860 49 H 0.138 0.862 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.698 13.189 20.300 26.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.111 4.111 3 H 0.120 0.880 4 C 0.009 3.991 5 N -0.352 5.352 6 C -0.378 4.378 7 H 0.100 0.900 8 C -0.259 4.259 9 N -0.594 5.594 10 Si 0.807 3.193 11 H -0.205 1.205 12 H -0.222 1.222 13 H -0.193 1.193 14 C 0.063 3.937 15 C 0.033 3.967 16 H 0.071 0.929 17 N -0.354 5.354 18 C 0.293 3.707 19 O -0.452 6.452 20 C 0.011 3.989 21 H 0.141 0.859 22 C -0.161 4.161 23 C -0.152 4.152 24 C -0.026 4.026 25 N -0.342 5.342 26 C 0.331 3.669 27 O -0.451 6.451 28 C -0.205 4.205 29 C -0.187 4.187 30 C -0.186 4.186 31 H 0.079 0.921 32 H 0.102 0.898 33 H 0.058 0.942 34 H 0.046 0.954 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.028 0.972 38 H 0.030 0.970 39 H 0.249 0.751 40 H 0.069 0.931 41 H 0.132 0.868 42 H 0.122 0.878 43 H 0.129 0.871 44 H 0.088 0.912 45 H 0.124 0.876 46 H 0.179 0.821 47 H 0.083 0.917 48 H 0.158 0.842 49 H 0.156 0.844 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.988 12.071 19.838 25.279 hybrid contribution 0.974 -0.918 -1.032 1.690 sum -9.014 11.154 18.806 23.650 Atomic orbital electron populations 1.21651 0.92441 1.01589 1.02713 1.22359 0.97102 0.99240 0.92424 0.88016 1.21580 0.88687 0.93259 0.95537 1.44661 1.32238 1.51329 1.07005 1.19439 0.99256 1.19646 0.99481 0.89977 1.25756 0.97989 1.02919 0.99190 1.70180 1.20013 1.45100 1.24141 0.85051 0.78362 0.78553 0.77286 1.20466 1.22188 1.19349 1.21275 0.91878 0.96435 0.84152 1.22025 0.96831 0.92944 0.84894 0.92914 1.45588 1.73908 1.11273 1.04625 1.21221 0.74996 0.89028 0.85417 1.90676 1.49514 1.18405 1.86590 1.22043 0.95842 0.96279 0.84726 0.85924 1.22805 0.91103 1.03080 0.99094 1.22689 0.97083 1.02435 0.92953 1.22384 0.93045 1.01279 0.85882 1.48372 1.20371 1.56617 1.08853 1.20138 0.79909 0.76233 0.90651 1.90732 1.65680 1.56107 1.32629 1.22241 1.02994 0.98171 0.97098 1.22981 1.01246 0.90579 1.03875 1.23008 0.90654 1.01514 1.03399 0.92131 0.89833 0.94169 0.95351 0.94603 0.94399 0.97249 0.97003 0.75074 0.93122 0.86790 0.87825 0.87084 0.91186 0.87554 0.82082 0.91696 0.84206 0.84392 0.90795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.76 9.16 71.99 0.66 -3.10 16 2 C -0.09 -3.28 3.20 -9.60 -0.03 -3.31 16 3 H 0.10 3.09 8.00 -2.39 -0.02 3.07 16 4 C 0.13 5.87 6.84 86.73 0.59 6.46 16 5 N -0.63 -34.86 3.39 -691.99 -2.35 -37.21 16 6 C -0.25 -14.94 10.23 84.03 0.86 -14.08 16 7 H 0.08 4.68 7.84 -2.91 -0.02 4.66 16 8 C -0.07 -3.93 5.40 84.86 0.46 -3.47 16 9 N -0.95 -60.38 10.71 21.65 0.23 -60.15 16 10 Si 0.98 48.24 29.56 68.60 2.03 50.27 16 11 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 12 H -0.30 -14.66 7.11 99.48 0.71 -13.96 16 13 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 14 C 0.19 10.34 5.10 86.85 0.44 10.78 16 15 C 0.14 6.13 2.87 46.38 0.13 6.26 16 16 H 0.05 2.73 7.45 -2.39 -0.02 2.72 16 17 N -0.70 -25.06 5.20 -435.96 -2.27 -27.33 16 18 C 0.51 19.44 5.73 87.66 0.50 19.94 16 19 O -0.57 -28.94 14.40 18.42 0.27 -28.68 16 20 C 0.12 3.01 3.56 44.72 0.16 3.17 16 21 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 22 C -0.12 -2.43 6.49 31.99 0.21 -2.22 16 23 C -0.11 -1.20 6.95 31.78 0.22 -0.98 16 24 C 0.10 1.29 6.35 86.73 0.55 1.84 16 25 N -0.61 -14.98 3.12 -792.28 -2.47 -17.45 16 26 C 0.54 16.41 7.05 87.66 0.62 17.03 16 27 O -0.57 -23.83 13.91 18.43 0.26 -23.57 16 28 C -0.18 -3.69 5.51 -11.54 -0.06 -3.75 16 29 C -0.15 -2.93 10.24 30.62 0.31 -2.62 16 30 C -0.15 -2.92 10.05 30.62 0.31 -2.61 16 31 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.04 1.32 8.06 -2.39 -0.02 1.30 16 34 H 0.03 1.23 7.76 -2.39 -0.02 1.21 16 35 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 37 H 0.01 0.55 8.05 -2.38 -0.02 0.53 16 38 H 0.01 0.75 7.00 -2.39 -0.02 0.74 16 39 H 0.41 11.01 8.57 -92.71 -0.79 10.22 16 40 H 0.05 1.38 8.05 -2.38 -0.02 1.36 16 41 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.11 0.56 8.14 -2.39 -0.02 0.55 16 44 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.11 0.73 7.98 -2.39 -0.02 0.71 16 46 H 0.16 1.82 7.74 -2.39 -0.02 1.81 16 47 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 48 H 0.14 1.67 8.14 -2.39 -0.02 1.65 16 49 H 0.14 1.65 8.14 -2.39 -0.02 1.63 16 50 H 0.07 1.97 7.67 -2.39 -0.02 1.96 16 Total: -1.00 -93.52 398.39 1.76 -91.76 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: 0.13 Total: 23.02 kcal Atomic # 6 Polarization: 23.42 SS G_CDS: 5.93 Total: 29.35 kcal Atomic # 7 Polarization: -135.29 SS G_CDS: -6.85 Total: -142.14 kcal Atomic # 8 Polarization: -52.77 SS G_CDS: 0.52 Total: -52.25 kcal Atomic # 14 Polarization: 48.24 SS G_CDS: 2.03 Total: 50.27 kcal Total: -93.52 1.76 -91.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080570199.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.076 kcal (2) G-P(sol) polarization free energy of solvation -93.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds