Wall clock time and date at job start Tue Mar 31 2020 18:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 110.88910 * 2 1 4 4 C 1.54915 * 111.00562 * 236.11850 * 2 1 3 5 5 N 1.47425 * 104.83172 * 204.91845 * 4 2 1 6 6 C 1.34775 * 125.64243 * 204.16432 * 5 4 2 7 7 O 1.21279 * 120.00641 * 355.11892 * 6 5 4 8 8 C 1.50702 * 119.99535 * 175.11951 * 6 5 4 9 9 H 1.08991 * 109.20188 * 313.05489 * 8 6 5 10 10 C 1.53290 * 109.20560 * 72.36743 * 8 6 5 11 11 N 1.46785 * 108.50225 * 180.47167 * 10 8 6 12 12 C 1.49415 * 112.10325 * 193.75653 * 11 10 8 13 13 C 1.57031 * 99.32351 * 113.45814 * 12 11 10 14 14 C 1.56479 * 107.13533 * 40.31862 * 13 12 11 15 15 C 1.49511 * 107.61051 * 302.19417 * 11 10 8 16 16 C 1.54372 * 104.42844 * 288.56873 * 15 11 10 17 17 C 1.50164 * 114.92479 * 57.52808 * 15 11 10 18 18 O 1.42803 * 109.20531 * 193.70523 * 8 6 5 19 19 C 1.47015 * 108.70482 * 24.13115 * 5 4 2 20 20 C 1.54327 * 107.27425 * 358.93844 * 19 5 4 21 21 H 1.08999 * 110.71969 * 96.17108 * 20 19 5 22 22 N 1.46497 * 110.72098 * 219.44902 * 20 19 5 23 23 C 1.36939 * 119.99736 * 273.54433 * 22 20 19 24 24 H 1.07997 * 120.00231 * 359.97438 * 23 22 20 25 25 C 1.38815 * 120.00091 * 180.02562 * 23 22 20 26 26 N 1.31617 * 119.99567 * 359.97438 * 25 23 22 27 27 Si 1.86794 * 120.00083 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.47105 * 0.02562 * 27 25 23 29 29 H 1.48499 * 109.47021 * 119.99739 * 27 25 23 30 30 H 1.48500 * 109.47087 * 239.99850 * 27 25 23 31 31 H 1.08999 * 109.47523 * 182.42458 * 1 2 3 32 32 H 1.09007 * 109.47377 * 302.42480 * 1 2 3 33 33 H 1.09002 * 109.47344 * 62.42883 * 1 2 3 34 34 H 1.09001 * 110.36462 * 86.07793 * 4 2 1 35 35 H 1.09004 * 110.36242 * 323.75738 * 4 2 1 36 36 H 1.09004 * 109.62789 * 300.16881 * 10 8 6 37 37 H 1.09000 * 109.63443 * 60.76337 * 10 8 6 38 38 H 1.08998 * 111.43507 * 230.98310 * 12 11 10 39 39 H 1.09003 * 111.42926 * 355.87856 * 12 11 10 40 40 H 1.08997 * 118.35382 * 180.89017 * 13 12 11 41 41 H 1.08989 * 114.70449 * 190.06946 * 14 13 12 42 42 H 1.09002 * 114.69646 * 55.82013 * 14 13 12 43 43 H 1.08994 * 114.71948 * 45.65740 * 16 15 11 44 44 H 1.08994 * 114.71920 * 179.97438 * 16 15 11 45 45 H 1.09000 * 109.69884 * 187.22434 * 17 15 11 46 46 H 1.09002 * 109.73752 * 66.63995 * 17 15 11 47 47 H 1.08994 * 109.88671 * 118.35722 * 19 5 4 48 48 H 1.09005 * 109.88107 * 239.52355 * 19 5 4 49 49 H 0.96999 * 120.00159 * 93.54916 * 22 20 19 50 50 H 0.97004 * 119.99777 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0853 -0.8062 -1.2006 5 7 3.4271 -1.2428 -0.7737 6 6 4.4480 -1.5597 -1.5946 7 8 4.2764 -1.5825 -2.7950 8 6 5.8028 -1.8858 -1.0208 9 1 6.0673 -1.1344 -0.2769 10 6 5.7476 -3.2623 -0.3484 11 7 7.0704 -3.5592 0.2144 12 6 7.2092 -4.9971 0.5959 13 6 8.2964 -5.4339 -0.4496 14 6 9.3357 -4.2683 -0.5482 15 6 8.0608 -3.5033 -0.9042 16 6 7.7619 -4.7624 -1.7458 17 6 8.1076 -2.1970 -1.6434 18 8 6.7727 -1.8711 -2.0687 19 6 3.4674 -1.2745 0.6955 20 6 2.0861 -0.8085 1.2020 21 1 1.4467 -1.6638 1.4203 22 7 2.2286 0.0486 2.3815 23 6 2.3033 -0.5108 3.6292 24 1 2.2567 -1.5836 3.7437 25 6 2.4378 0.3013 4.7470 26 7 2.4941 1.6088 4.6075 27 14 2.5390 -0.4617 6.4490 28 1 2.4536 -1.9398 6.3347 29 1 3.8291 -0.0885 7.0828 30 1 1.4155 0.0367 7.2825 31 1 -0.3634 -1.0267 0.0435 32 1 -0.3634 0.5511 0.8675 33 1 -0.3634 0.4757 -0.9110 34 1 2.1560 -0.1712 -2.0837 35 1 1.4518 -1.6699 -1.4030 36 1 5.0046 -3.2507 0.4491 37 1 5.4851 -4.0202 -1.0865 38 1 7.5734 -5.1047 1.6176 39 1 6.2750 -5.5397 0.4506 40 1 8.6253 -6.4730 -0.4508 41 1 10.0519 -4.3644 -1.3641 42 1 9.7893 -3.9810 0.4004 43 1 6.7047 -4.9361 -1.9465 44 1 8.3999 -4.8880 -2.6206 45 1 8.7580 -2.2901 -2.5131 46 1 8.4847 -1.4147 -0.9847 47 1 3.6649 -2.2898 1.0392 48 1 4.2425 -0.6002 1.0597 49 1 2.2700 1.0122 2.2787 50 1 2.5884 2.1763 5.3885 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082653360.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:04 Heat of formation + Delta-G solvation = 22.340283 kcal Electronic energy + Delta-G solvation = -30702.579674 eV Core-core repulsion = 26732.927782 eV Total energy + Delta-G solvation = -3969.651892 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.39796 -39.97464 -38.05689 -36.96673 -34.22206 -33.87793 -32.50827 -30.78091 -29.80978 -29.48870 -27.57305 -26.37349 -25.71466 -24.58215 -24.18474 -23.39335 -21.49387 -20.64146 -20.01327 -19.46733 -18.91081 -17.22394 -17.13941 -16.87859 -16.16724 -15.96418 -15.61107 -15.34667 -15.11371 -14.61963 -14.43287 -13.97367 -13.74642 -13.60237 -13.44328 -13.21677 -12.97570 -12.90021 -12.80546 -12.52775 -12.30156 -12.15137 -12.06298 -11.68198 -11.57313 -11.29481 -11.16302 -11.04312 -10.94909 -10.88121 -10.76925 -10.63345 -10.47802 -10.26205 -9.98681 -9.80294 -9.72328 -9.57965 -9.03458 -8.81741 -8.38117 -7.12847 -5.88127 -3.19151 2.64031 2.79601 3.37175 3.42505 3.43365 3.45366 3.77192 3.93926 4.06140 4.23868 4.33634 4.50004 4.63096 4.67091 4.79232 4.91716 4.94135 5.04841 5.10111 5.17955 5.22782 5.29145 5.38135 5.39029 5.43227 5.44365 5.51888 5.54564 5.59784 5.62365 5.65018 5.73741 5.77888 5.79708 5.81974 5.87707 5.95860 6.15214 6.21682 6.25126 6.33761 6.44111 6.49418 6.57101 6.58716 6.81970 6.92142 7.60377 7.70691 8.28125 8.30914 9.41457 9.94616 10.29533 11.33769 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010799 B = 0.003704 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2592.211500 B = 7557.129150 C = 9425.546576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.114 4.114 3 H 0.085 0.915 4 C 0.117 3.883 5 N -0.610 5.610 6 C 0.536 3.464 7 O -0.532 6.532 8 C 0.084 3.916 9 H 0.092 0.908 10 C 0.009 3.991 11 N -0.467 5.467 12 C 0.034 3.966 13 C -0.143 4.143 14 C -0.108 4.108 15 C 0.008 3.992 16 C -0.174 4.174 17 C 0.093 3.907 18 O -0.355 6.355 19 C 0.068 3.932 20 C 0.178 3.822 21 H 0.067 0.933 22 N -0.711 5.711 23 C -0.249 4.249 24 H 0.073 0.927 25 C -0.006 4.006 26 N -0.928 5.928 27 Si 0.906 3.094 28 H -0.280 1.280 29 H -0.291 1.291 30 H -0.291 1.291 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.050 0.950 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.103 0.897 37 H 0.057 0.943 38 H 0.095 0.905 39 H 0.072 0.928 40 H 0.109 0.891 41 H 0.101 0.899 42 H 0.078 0.922 43 H 0.071 0.929 44 H 0.094 0.906 45 H 0.105 0.895 46 H 0.065 0.935 47 H 0.061 0.939 48 H 0.076 0.924 49 H 0.387 0.613 50 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.267 -11.599 -11.639 18.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.134 4.134 3 H 0.103 0.897 4 C -0.006 4.006 5 N -0.345 5.345 6 C 0.322 3.678 7 O -0.408 6.408 8 C 0.022 3.978 9 H 0.110 0.890 10 C -0.120 4.120 11 N -0.190 5.190 12 C -0.093 4.093 13 C -0.162 4.162 14 C -0.145 4.145 15 C -0.082 4.082 16 C -0.213 4.213 17 C 0.016 3.984 18 O -0.272 6.272 19 C -0.058 4.058 20 C 0.066 3.934 21 H 0.085 0.915 22 N -0.351 5.351 23 C -0.379 4.379 24 H 0.091 0.909 25 C -0.203 4.203 26 N -0.575 5.575 27 Si 0.737 3.263 28 H -0.205 1.205 29 H -0.218 1.218 30 H -0.218 1.218 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.121 0.879 37 H 0.075 0.925 38 H 0.113 0.887 39 H 0.091 0.909 40 H 0.127 0.873 41 H 0.119 0.881 42 H 0.097 0.903 43 H 0.089 0.911 44 H 0.112 0.888 45 H 0.123 0.877 46 H 0.083 0.917 47 H 0.079 0.921 48 H 0.095 0.905 49 H 0.222 0.778 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 9.235 -11.245 -11.839 18.759 hybrid contribution 0.060 -0.734 0.659 0.988 sum 9.295 -11.979 -11.180 18.839 Atomic orbital electron populations 1.21602 0.93753 1.01867 1.01821 1.22636 0.96386 0.99843 0.94485 0.89707 1.22273 0.82355 0.98136 0.97835 1.48435 1.11844 1.66101 1.08137 1.19624 0.84462 0.77522 0.86174 1.90685 1.83376 1.52137 1.14623 1.21778 0.88291 0.97683 0.90032 0.89022 1.23104 0.92917 0.96287 0.99651 1.67236 1.03444 1.21167 1.27167 1.23860 0.97903 0.87986 0.99571 1.24883 0.96854 0.98690 0.95747 1.23283 0.93825 0.94903 1.02526 1.23458 0.96462 0.95269 0.93002 1.24540 1.01923 0.97689 0.97101 1.21847 0.84199 0.93539 0.98833 1.88167 1.16357 1.90359 1.32355 1.23515 1.03779 1.01260 0.77256 1.21244 0.91381 0.93858 0.86921 0.91542 1.42364 1.86881 1.05308 1.00525 1.19267 1.43200 0.91931 0.83545 0.90941 1.24753 1.02259 0.95334 0.97972 1.69667 1.56419 1.02320 1.29116 0.86140 0.77291 0.78250 0.84602 1.20469 1.21760 1.21789 0.92768 0.91374 0.93130 0.90876 0.91536 0.87859 0.92526 0.88667 0.90928 0.87325 0.88072 0.90307 0.91065 0.88798 0.87692 0.91661 0.92106 0.90535 0.77815 0.93371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.81 9.29 37.15 0.35 -1.46 16 2 C -0.11 -1.74 3.25 -88.47 -0.29 -2.03 16 3 H 0.08 1.38 8.00 -51.93 -0.42 0.97 16 4 C 0.12 1.72 6.36 -2.53 -0.02 1.71 16 5 N -0.61 -9.80 3.33 -170.52 -0.57 -10.36 16 6 C 0.54 9.21 7.15 -10.99 -0.08 9.13 16 7 O -0.53 -10.78 16.84 -14.13 -0.24 -11.01 16 8 C 0.08 1.27 2.54 -27.73 -0.07 1.20 16 9 H 0.09 1.40 7.80 -51.93 -0.40 1.00 16 10 C 0.01 0.12 4.61 -3.74 -0.02 0.11 16 11 N -0.47 -5.71 6.03 -227.98 -1.37 -7.08 16 12 C 0.03 0.34 7.02 -0.24 0.00 0.34 16 13 C -0.14 -1.20 6.40 -98.01 -0.63 -1.83 16 14 C -0.11 -0.88 7.81 -30.35 -0.24 -1.11 16 15 C 0.01 0.09 1.59 -143.65 -0.23 -0.14 16 16 C -0.17 -1.71 7.01 -30.14 -0.21 -1.92 16 17 C 0.09 1.06 6.72 35.75 0.24 1.30 16 18 O -0.35 -5.43 10.02 -54.92 -0.55 -5.98 16 19 C 0.07 1.12 5.80 -3.07 -0.02 1.11 16 20 C 0.18 3.20 3.06 -66.09 -0.20 3.00 16 21 H 0.07 1.20 8.00 -51.93 -0.42 0.78 16 22 N -0.71 -16.22 5.18 -51.65 -0.27 -16.49 16 23 C -0.25 -6.37 9.98 -15.06 -0.15 -6.52 16 24 H 0.07 1.81 7.83 -52.49 -0.41 1.39 16 25 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 26 N -0.93 -26.64 13.06 55.49 0.72 -25.91 16 27 Si 0.91 21.36 29.55 -169.99 -5.02 16.33 16 28 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 29 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 30 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 31 H 0.05 0.69 8.11 -51.93 -0.42 0.27 16 32 H 0.07 1.04 8.14 -51.92 -0.42 0.61 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 1.09 8.09 -51.93 -0.42 0.67 16 35 H 0.07 0.91 8.04 -51.93 -0.42 0.50 16 36 H 0.10 1.39 5.54 -51.93 -0.29 1.10 16 37 H 0.06 0.77 5.97 -51.93 -0.31 0.46 16 38 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.07 0.70 7.73 -51.93 -0.40 0.30 16 40 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.10 0.63 7.84 -51.93 -0.41 0.22 16 42 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.07 0.83 6.08 -51.93 -0.32 0.51 16 44 H 0.09 0.79 7.85 -51.93 -0.41 0.39 16 45 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.06 0.96 6.04 -51.93 -0.31 0.64 16 48 H 0.08 1.40 7.80 -51.93 -0.40 1.00 16 49 H 0.39 9.54 7.71 -40.82 -0.31 9.23 16 50 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 383.14 15.07 5.77 5.77 Total: -1.00 -30.95 383.14 -11.34 -42.29 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -8.16 Total: 9.83 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: -1.66 Total: 2.60 kcal Atomic # 7 Polarization: -58.36 SS G_CDS: -1.48 Total: -59.84 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -0.79 Total: -16.99 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.95 -11.34 -42.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082653360.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.631 kcal (2) G-P(sol) polarization free energy of solvation -30.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds