Wall clock time and date at job start Tue Mar 31 2020 18:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 110.88910 * 2 1 4 4 C 1.54915 * 111.00562 * 236.11850 * 2 1 3 5 5 N 1.47425 * 104.83172 * 204.91845 * 4 2 1 6 6 C 1.34775 * 125.64243 * 204.16432 * 5 4 2 7 7 O 1.21279 * 120.00641 * 355.11892 * 6 5 4 8 8 C 1.50702 * 119.99535 * 175.11951 * 6 5 4 9 9 H 1.08991 * 109.20188 * 313.05489 * 8 6 5 10 10 C 1.53290 * 109.20560 * 72.36743 * 8 6 5 11 11 N 1.46785 * 108.50225 * 180.47167 * 10 8 6 12 12 C 1.49415 * 112.10325 * 193.75653 * 11 10 8 13 13 C 1.57031 * 99.32351 * 113.45814 * 12 11 10 14 14 C 1.56479 * 107.13533 * 40.31862 * 13 12 11 15 15 C 1.49511 * 107.61051 * 302.19417 * 11 10 8 16 16 C 1.54372 * 104.42844 * 288.56873 * 15 11 10 17 17 C 1.50164 * 114.92479 * 57.52808 * 15 11 10 18 18 O 1.42803 * 109.20531 * 193.70523 * 8 6 5 19 19 C 1.47015 * 108.70482 * 24.13115 * 5 4 2 20 20 C 1.54327 * 107.27425 * 358.93844 * 19 5 4 21 21 H 1.08999 * 110.71969 * 96.17108 * 20 19 5 22 22 N 1.46497 * 110.72098 * 219.44902 * 20 19 5 23 23 C 1.36939 * 119.99736 * 273.54433 * 22 20 19 24 24 H 1.07997 * 120.00231 * 359.97438 * 23 22 20 25 25 C 1.38815 * 120.00091 * 180.02562 * 23 22 20 26 26 N 1.31617 * 119.99567 * 359.97438 * 25 23 22 27 27 Si 1.86794 * 120.00083 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.47105 * 0.02562 * 27 25 23 29 29 H 1.48499 * 109.47021 * 119.99739 * 27 25 23 30 30 H 1.48500 * 109.47087 * 239.99850 * 27 25 23 31 31 H 1.08999 * 109.47523 * 182.42458 * 1 2 3 32 32 H 1.09007 * 109.47377 * 302.42480 * 1 2 3 33 33 H 1.09002 * 109.47344 * 62.42883 * 1 2 3 34 34 H 1.09001 * 110.36462 * 86.07793 * 4 2 1 35 35 H 1.09004 * 110.36242 * 323.75738 * 4 2 1 36 36 H 1.09004 * 109.62789 * 300.16881 * 10 8 6 37 37 H 1.09000 * 109.63443 * 60.76337 * 10 8 6 38 38 H 1.08998 * 111.43507 * 230.98310 * 12 11 10 39 39 H 1.09003 * 111.42926 * 355.87856 * 12 11 10 40 40 H 1.08997 * 118.35382 * 180.89017 * 13 12 11 41 41 H 1.08989 * 114.70449 * 190.06946 * 14 13 12 42 42 H 1.09002 * 114.69646 * 55.82013 * 14 13 12 43 43 H 1.08994 * 114.71948 * 45.65740 * 16 15 11 44 44 H 1.08994 * 114.71920 * 179.97438 * 16 15 11 45 45 H 1.09000 * 109.69884 * 187.22434 * 17 15 11 46 46 H 1.09002 * 109.73752 * 66.63995 * 17 15 11 47 47 H 1.08994 * 109.88671 * 118.35722 * 19 5 4 48 48 H 1.09005 * 109.88107 * 239.52355 * 19 5 4 49 49 H 0.96999 * 120.00159 * 93.54916 * 22 20 19 50 50 H 0.97004 * 119.99777 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0853 -0.8062 -1.2006 5 7 3.4271 -1.2428 -0.7737 6 6 4.4480 -1.5597 -1.5946 7 8 4.2764 -1.5825 -2.7950 8 6 5.8028 -1.8858 -1.0208 9 1 6.0673 -1.1344 -0.2769 10 6 5.7476 -3.2623 -0.3484 11 7 7.0704 -3.5592 0.2144 12 6 7.2092 -4.9971 0.5959 13 6 8.2964 -5.4339 -0.4496 14 6 9.3357 -4.2683 -0.5482 15 6 8.0608 -3.5033 -0.9042 16 6 7.7619 -4.7624 -1.7458 17 6 8.1076 -2.1970 -1.6434 18 8 6.7727 -1.8711 -2.0687 19 6 3.4674 -1.2745 0.6955 20 6 2.0861 -0.8085 1.2020 21 1 1.4467 -1.6638 1.4203 22 7 2.2286 0.0486 2.3815 23 6 2.3033 -0.5108 3.6292 24 1 2.2567 -1.5836 3.7437 25 6 2.4378 0.3013 4.7470 26 7 2.4941 1.6088 4.6075 27 14 2.5390 -0.4617 6.4490 28 1 2.4536 -1.9398 6.3347 29 1 3.8291 -0.0885 7.0828 30 1 1.4155 0.0367 7.2825 31 1 -0.3634 -1.0267 0.0435 32 1 -0.3634 0.5511 0.8675 33 1 -0.3634 0.4757 -0.9110 34 1 2.1560 -0.1712 -2.0837 35 1 1.4518 -1.6699 -1.4030 36 1 5.0046 -3.2507 0.4491 37 1 5.4851 -4.0202 -1.0865 38 1 7.5734 -5.1047 1.6176 39 1 6.2750 -5.5397 0.4506 40 1 8.6253 -6.4730 -0.4508 41 1 10.0519 -4.3644 -1.3641 42 1 9.7893 -3.9810 0.4004 43 1 6.7047 -4.9361 -1.9465 44 1 8.3999 -4.8880 -2.6206 45 1 8.7580 -2.2901 -2.5131 46 1 8.4847 -1.4147 -0.9847 47 1 3.6649 -2.2898 1.0392 48 1 4.2425 -0.6002 1.0597 49 1 2.2700 1.0122 2.2787 50 1 2.5884 2.1763 5.3885 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082653360.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:03 Heat of formation + Delta-G solvation = 1.096362 kcal Electronic energy + Delta-G solvation = -30703.500880 eV Core-core repulsion = 26732.927782 eV Total energy + Delta-G solvation = -3970.573098 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.22258 -41.30488 -39.33250 -38.22429 -35.89862 -34.98519 -33.88136 -32.52508 -30.80578 -30.40314 -29.17791 -27.49143 -26.48645 -25.94853 -25.46636 -24.57149 -22.92573 -21.42959 -21.39350 -20.65493 -19.89907 -19.07278 -18.46041 -18.00932 -17.25650 -16.95559 -16.78191 -16.68164 -16.34315 -16.00130 -15.53224 -15.35708 -15.15547 -14.91707 -14.65879 -14.51687 -14.13468 -14.07166 -13.85036 -13.70991 -13.51991 -13.38183 -13.01347 -12.91447 -12.86006 -12.77204 -12.40340 -12.25101 -12.12196 -12.08801 -12.02012 -11.90594 -11.72966 -11.66279 -11.41712 -11.21327 -11.03542 -10.86793 -10.71020 -9.77205 -9.69120 -9.05333 -7.92961 -5.22694 1.29803 1.50301 1.51669 1.55930 1.60690 2.55967 2.57676 2.69226 3.18668 3.24208 3.36212 3.38748 3.42586 3.55155 3.70398 3.71456 3.77266 3.85590 3.90103 3.95562 4.15871 4.19940 4.26347 4.35823 4.40264 4.48183 4.49374 4.57267 4.60363 4.64558 4.65810 4.75321 4.81484 4.85337 4.86515 4.90560 4.92930 5.05467 5.08508 5.11866 5.13349 5.17114 5.32570 5.44533 5.47760 5.57226 5.68658 5.86133 6.27150 6.33584 6.93233 7.35793 8.06504 8.30531 9.30132 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010799 B = 0.003704 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2592.211500 B = 7557.129150 C = 9425.546576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.103 4.103 3 H 0.072 0.928 4 C 0.118 3.882 5 N -0.607 5.607 6 C 0.534 3.466 7 O -0.565 6.565 8 C 0.089 3.911 9 H 0.084 0.916 10 C 0.021 3.979 11 N -0.486 5.486 12 C 0.027 3.973 13 C -0.129 4.129 14 C -0.094 4.094 15 C -0.006 4.006 16 C -0.174 4.174 17 C 0.086 3.914 18 O -0.379 6.379 19 C 0.082 3.918 20 C 0.173 3.827 21 H 0.074 0.926 22 N -0.721 5.721 23 C -0.238 4.238 24 H 0.081 0.919 25 C -0.068 4.068 26 N -0.967 5.967 27 Si 0.966 3.034 28 H -0.264 1.264 29 H -0.298 1.298 30 H -0.296 1.296 31 H 0.066 0.934 32 H 0.048 0.952 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.098 0.902 37 H 0.052 0.948 38 H 0.101 0.899 39 H 0.072 0.928 40 H 0.132 0.868 41 H 0.127 0.873 42 H 0.077 0.923 43 H 0.048 0.952 44 H 0.111 0.889 45 H 0.130 0.870 46 H 0.064 0.936 47 H 0.073 0.927 48 H 0.057 0.943 49 H 0.375 0.625 50 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.167 -13.851 -12.194 21.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.123 4.123 3 H 0.090 0.910 4 C -0.004 4.004 5 N -0.341 5.341 6 C 0.322 3.678 7 O -0.444 6.444 8 C 0.028 3.972 9 H 0.102 0.898 10 C -0.108 4.108 11 N -0.210 5.210 12 C -0.100 4.100 13 C -0.148 4.148 14 C -0.131 4.131 15 C -0.097 4.097 16 C -0.213 4.213 17 C 0.010 3.990 18 O -0.297 6.297 19 C -0.043 4.043 20 C 0.063 3.937 21 H 0.092 0.908 22 N -0.360 5.360 23 C -0.370 4.370 24 H 0.099 0.901 25 C -0.260 4.260 26 N -0.617 5.617 27 Si 0.795 3.205 28 H -0.188 1.188 29 H -0.225 1.225 30 H -0.224 1.224 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.104 0.896 36 H 0.116 0.884 37 H 0.070 0.930 38 H 0.119 0.881 39 H 0.090 0.910 40 H 0.150 0.850 41 H 0.145 0.855 42 H 0.096 0.904 43 H 0.066 0.934 44 H 0.129 0.871 45 H 0.147 0.853 46 H 0.082 0.918 47 H 0.091 0.909 48 H 0.076 0.924 49 H 0.208 0.792 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 10.131 -13.547 -12.411 20.980 hybrid contribution -0.206 -0.041 0.736 0.765 sum 9.925 -13.588 -11.675 20.480 Atomic orbital electron populations 1.21562 0.92054 1.02700 1.02137 1.22542 0.97700 0.98776 0.93296 0.90984 1.22369 0.81869 0.98779 0.97418 1.48441 1.12344 1.65556 1.07730 1.20007 0.85235 0.76812 0.85774 1.90658 1.84007 1.53791 1.15903 1.21666 0.87309 0.98501 0.89741 0.89840 1.22911 0.93895 0.94966 0.99029 1.67225 1.02918 1.22889 1.27923 1.23971 0.98762 0.86762 1.00483 1.24869 0.96144 0.99936 0.93844 1.23361 0.93015 0.93366 1.03375 1.23639 0.97810 0.95236 0.92966 1.24582 1.00982 0.97386 0.98309 1.22135 0.82642 0.94127 1.00113 1.88125 1.17918 1.90745 1.32924 1.23188 1.02186 1.01392 0.77567 1.21432 0.92128 0.93846 0.86338 0.90840 1.42476 1.87015 1.05212 1.01257 1.19643 1.40518 0.92293 0.84554 0.90077 1.25466 1.03530 0.95739 1.01305 1.69812 1.58872 1.03566 1.29444 0.85190 0.76398 0.78274 0.80595 1.18784 1.22508 1.22392 0.91455 0.93248 0.90833 0.90691 0.89641 0.88417 0.93035 0.88124 0.90959 0.84995 0.85483 0.90430 0.93351 0.87067 0.85255 0.91775 0.90880 0.92435 0.79196 0.94108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.26 9.29 71.98 0.67 -2.59 16 2 C -0.10 -3.09 3.25 -9.40 -0.03 -3.12 16 3 H 0.07 2.36 8.00 -2.39 -0.02 2.34 16 4 C 0.12 3.34 6.36 86.86 0.55 3.89 16 5 N -0.61 -19.27 3.33 -811.79 -2.70 -21.97 16 6 C 0.53 18.46 7.15 87.66 0.63 19.08 16 7 O -0.56 -22.99 16.84 15.80 0.27 -22.73 16 8 C 0.09 2.73 2.54 29.95 0.08 2.81 16 9 H 0.08 2.64 7.80 -2.39 -0.02 2.62 16 10 C 0.02 0.56 4.61 86.42 0.40 0.96 16 11 N -0.49 -11.47 6.03 -875.20 -5.27 -16.75 16 12 C 0.03 0.50 7.02 87.23 0.61 1.11 16 13 C -0.13 -1.80 6.40 -15.58 -0.10 -1.90 16 14 C -0.09 -1.24 7.81 28.25 0.22 -1.01 16 15 C -0.01 -0.13 1.59 -5.73 -0.01 -0.13 16 16 C -0.17 -3.06 7.01 28.39 0.20 -2.86 16 17 C 0.09 1.87 6.72 71.07 0.48 2.34 16 18 O -0.38 -11.59 10.02 -130.15 -1.30 -12.90 16 19 C 0.08 2.71 5.80 86.73 0.50 3.22 16 20 C 0.17 6.10 3.06 46.18 0.14 6.25 16 21 H 0.07 2.53 8.00 -2.39 -0.02 2.51 16 22 N -0.72 -33.09 5.18 -317.31 -1.64 -34.73 16 23 C -0.24 -12.17 9.98 84.03 0.84 -11.33 16 24 H 0.08 3.94 7.83 -2.91 -0.02 3.91 16 25 C -0.07 -3.67 5.50 84.86 0.47 -3.21 16 26 N -0.97 -56.67 13.06 21.65 0.28 -56.39 16 27 Si 0.97 44.06 29.55 68.60 2.03 46.08 16 28 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 29 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 30 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 31 H 0.07 1.55 8.11 -2.39 -0.02 1.53 16 32 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 33 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.07 2.15 8.09 -2.39 -0.02 2.13 16 35 H 0.09 2.15 8.04 -2.39 -0.02 2.13 16 36 H 0.10 2.62 5.54 -2.38 -0.01 2.61 16 37 H 0.05 1.41 5.97 -2.39 -0.01 1.39 16 38 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.07 1.31 7.73 -2.39 -0.02 1.29 16 40 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.13 1.04 7.84 -2.39 -0.02 1.02 16 42 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.05 1.08 6.08 -2.39 -0.01 1.06 16 44 H 0.11 1.55 7.85 -2.39 -0.02 1.53 16 45 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 46 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.07 2.25 6.04 -2.39 -0.01 2.23 16 48 H 0.06 2.15 7.80 -2.38 -0.02 2.13 16 49 H 0.38 18.94 7.71 -92.71 -0.72 18.23 16 50 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -67.26 383.14 -2.47 -69.73 By element: Atomic # 1 Polarization: 35.91 SS G_CDS: 0.23 Total: 36.14 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: 5.64 Total: 13.51 kcal Atomic # 7 Polarization: -120.51 SS G_CDS: -9.33 Total: -129.84 kcal Atomic # 8 Polarization: -34.59 SS G_CDS: -1.04 Total: -35.63 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Total: -67.26 -2.47 -69.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082653360.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.830 kcal (2) G-P(sol) polarization free energy of solvation -67.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds