Wall clock time and date at job start Tue Mar 31 2020 18:33:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09008 * 110.88445 * 2 1
4 4 C 1.54908 * 111.00368 * 236.12120 * 2 1 3
5 5 N 1.47425 * 104.92961 * 204.85960 * 4 2 1
6 6 C 1.36938 * 125.65179 * 204.15650 * 5 4 2
7 7 H 1.07995 * 120.00281 * 180.02562 * 6 5 4
8 8 C 1.38810 * 119.99650 * 0.02562 * 6 5 4
9 9 N 1.31621 * 120.00025 * 0.02562 * 8 6 5
10 10 Si 1.86799 * 120.00113 * 180.02562 * 8 6 5
11 11 H 1.48504 * 109.47166 * 59.99694 * 10 8 6
12 12 H 1.48493 * 109.47565 * 179.97438 * 10 8 6
13 13 H 1.48505 * 109.47135 * 300.00010 * 10 8 6
14 14 C 1.47290 * 108.55742 * 24.15407 * 5 4 2
15 15 C 1.54325 * 107.30599 * 358.92448 * 14 5 4
16 16 H 1.08997 * 110.72163 * 96.18354 * 15 14 5
17 17 C 1.53003 * 110.72022 * 219.45263 * 15 14 5
18 18 N 1.46494 * 109.47093 * 288.52410 * 17 15 14
19 19 C 1.34776 * 119.99924 * 180.02562 * 18 17 15
20 20 O 1.21498 * 120.00082 * 0.02562 * 19 18 17
21 21 C 1.48333 * 120.00441 * 179.97438 * 19 18 17
22 22 C 1.42266 * 126.94114 * 179.70588 * 21 19 18
23 23 C 1.35324 * 103.92178 * 179.88983 * 22 21 19
24 24 C 1.50695 * 126.66444 * 180.08449 * 23 22 21
25 25 C 1.52993 * 109.47466 * 60.32135 * 24 23 22
26 26 C 1.53006 * 109.46868 * 180.32372 * 24 23 22
27 27 C 1.52998 * 109.47224 * 300.32062 * 24 23 22
28 28 O 1.34016 * 106.66251 * 0.37354 * 23 22 21
29 29 N 1.20895 * 111.85124 * 359.74895 * 28 23 22
30 30 H 1.09001 * 109.47276 * 182.42937 * 1 2 3
31 31 H 1.09003 * 109.46690 * 302.42477 * 1 2 3
32 32 H 1.08998 * 109.47248 * 62.42638 * 1 2 3
33 33 H 1.09002 * 110.36632 * 323.75356 * 4 2 1
34 34 H 1.08995 * 110.36781 * 85.96593 * 4 2 1
35 35 H 0.97001 * 119.99611 * 180.02562 * 9 8 6
36 36 H 1.09004 * 109.85762 * 239.50064 * 14 5 4
37 37 H 1.08999 * 109.87327 * 118.35916 * 14 5 4
38 38 H 1.09000 * 109.46700 * 48.52364 * 17 15 14
39 39 H 1.09004 * 109.46934 * 168.52488 * 17 15 14
40 40 H 0.96994 * 120.00707 * 0.02562 * 18 17 15
41 41 H 1.07998 * 128.03890 * 0.02994 * 22 21 19
42 42 H 1.09010 * 109.46800 * 59.99814 * 25 24 23
43 43 H 1.08998 * 109.47583 * 179.97438 * 25 24 23
44 44 H 1.09005 * 109.47342 * 300.00239 * 25 24 23
45 45 H 1.08994 * 109.46779 * 60.00015 * 26 24 23
46 46 H 1.09000 * 109.46760 * 179.97438 * 26 24 23
47 47 H 1.09000 * 109.46906 * 299.99926 * 26 24 23
48 48 H 1.09005 * 109.47399 * 60.00012 * 27 24 23
49 49 H 1.09000 * 109.47491 * 180.02562 * 27 24 23
50 50 H 1.09003 * 109.47497 * 300.00466 * 27 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9186 1.0185 0.0000
4 6 2.0852 -0.8061 -1.2006
5 7 3.4280 -1.2427 -0.7766
6 6 4.4637 -1.5645 -1.6126
7 1 5.4129 -1.8750 -1.2017
8 6 4.2935 -1.4915 -2.9883
9 7 3.1367 -1.1126 -3.4891
10 14 5.7060 -1.9310 -4.1289
11 1 6.1137 -3.3392 -3.8920
12 1 5.2707 -1.7729 -5.5397
13 1 6.8566 -1.0310 -3.8615
14 6 3.4675 -1.2744 0.6955
15 6 2.0862 -0.8083 1.2019
16 1 1.4468 -1.6636 1.4204
17 6 2.2350 0.0867 2.4339
18 7 2.6469 -0.7260 3.5810
19 6 2.8403 -0.1468 4.7825
20 8 2.6726 1.0493 4.9143
21 6 3.2568 -0.9696 5.9442
22 6 3.5065 -0.5145 7.2688
23 6 3.8494 -1.6384 7.9400
24 6 4.2183 -1.7387 9.3977
25 6 3.0443 -1.2617 10.2550
26 6 4.5437 -3.1935 9.7424
27 6 5.4417 -0.8629 9.6756
28 8 3.8032 -2.6437 7.0550
29 7 3.4747 -2.2612 5.9563
30 1 -0.3634 -1.0267 0.0436
31 1 -0.3633 0.5511 0.8675
32 1 -0.3633 0.4757 -0.9109
33 1 1.4518 -1.6698 -1.4031
34 1 2.1541 -0.1717 -2.0842
35 1 3.0177 -1.0619 -4.4504
36 1 4.2427 -0.6001 1.0596
37 1 3.6651 -2.2897 1.0391
38 1 2.9889 0.8497 2.2396
39 1 1.2807 0.5661 2.6521
40 1 2.7805 -1.6809 3.4759
41 1 3.4364 0.4934 7.6504
42 1 2.1727 -1.8857 10.0569
43 1 3.3110 -1.3347 11.3093
44 1 2.8125 -0.2253 10.0093
45 1 5.3801 -3.5332 9.1317
46 1 4.8109 -3.2660 10.7966
47 1 3.6721 -3.8174 9.5444
48 1 5.2100 0.1735 9.4300
49 1 5.7088 -0.9358 10.7298
50 1 6.2781 -1.2027 9.0648
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001092816580.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:33:09
Heat of formation + Delta-G solvation = 12.174001 kcal
Electronic energy + Delta-G solvation = -28845.434237 eV
Core-core repulsion = 24875.341502 eV
Total energy + Delta-G solvation = -3970.092735 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.200 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-46.23198 -40.97407 -39.59633 -38.28363 -36.23697 -35.16234 -34.66557 -32.58480
-32.03770 -30.87555 -28.34867 -28.15431 -27.93961 -26.99231 -25.61737 -24.27780
-24.18428 -22.48108 -21.59248 -21.32511 -20.35845 -18.91693 -18.88663 -18.33813
-17.92789 -17.30489 -16.84838 -16.53104 -15.99047 -15.78420 -15.58581 -15.16069
-14.97568 -14.87267 -14.75319 -14.61622 -14.40555 -14.08232 -13.59290 -13.42167
-13.23180 -13.20158 -13.08493 -12.80511 -12.72210 -12.68812 -12.55221 -12.51498
-12.26499 -12.03060 -12.01164 -11.90239 -11.78215 -11.73612 -11.61741 -11.57327
-11.45578 -11.12195 -10.76223 -10.49153 -10.31230 -8.91535 -7.79499 -5.24466
-0.02829 0.60495 1.43887 1.47181 1.53687 1.71387 1.92801 1.96400
2.46905 2.80685 3.28692 3.31525 3.56102 3.71362 3.80433 3.81766
3.91075 3.93261 3.96621 4.00806 4.22896 4.31238 4.39854 4.45406
4.56480 4.69156 4.71610 4.79513 4.79569 4.80655 4.81642 4.90287
4.91061 5.01877 5.02192 5.04084 5.08084 5.11047 5.21802 5.30712
5.34538 5.35321 5.40481 5.43400 5.46230 5.69726 5.81576 6.17623
6.29585 6.79650 6.97248 7.08657 7.75294 8.39592 9.21636
Molecular weight = 335.20amu
Principal moments of inertia in cm(-1)
A = 0.017723 B = 0.002183 C = 0.002023
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1579.466225 B =12821.375640 C =13836.328774
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.128 4.128
2 C -0.099 4.099
3 H 0.070 0.930
4 C 0.161 3.839
5 N -0.629 5.629
6 C -0.243 4.243
7 H 0.077 0.923
8 C -0.067 4.067
9 N -0.947 5.947
10 Si 0.981 3.019
11 H -0.279 1.279
12 H -0.291 1.291
13 H -0.278 1.278
14 C 0.137 3.863
15 C -0.090 4.090
16 H 0.093 0.907
17 C 0.143 3.857
18 N -0.703 5.703
19 C 0.597 3.403
20 O -0.554 6.554
21 C -0.044 4.044
22 C -0.187 4.187
23 C -0.007 4.007
24 C 0.017 3.983
25 C -0.141 4.141
26 C -0.149 4.149
27 C -0.143 4.143
28 O 0.129 5.871
29 N -0.348 5.348
30 H 0.054 0.946
31 H 0.074 0.926
32 H 0.055 0.945
33 H -0.010 1.010
34 H 0.072 0.928
35 H 0.248 0.752
36 H 0.020 0.980
37 H 0.022 0.978
38 H 0.062 0.938
39 H 0.087 0.913
40 H 0.412 0.588
41 H 0.191 0.809
42 H 0.057 0.943
43 H 0.093 0.907
44 H 0.063 0.937
45 H 0.058 0.942
46 H 0.090 0.910
47 H 0.060 0.940
48 H 0.063 0.937
49 H 0.094 0.906
50 H 0.055 0.945
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.399 -0.784 30.886 30.928
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.185 4.185
2 C -0.119 4.119
3 H 0.089 0.911
4 C 0.037 3.963
5 N -0.355 5.355
6 C -0.371 4.371
7 H 0.095 0.905
8 C -0.259 4.259
9 N -0.596 5.596
10 Si 0.809 3.191
11 H -0.205 1.205
12 H -0.217 1.217
13 H -0.204 1.204
14 C 0.011 3.989
15 C -0.110 4.110
16 H 0.111 0.889
17 C 0.020 3.980
18 N -0.354 5.354
19 C 0.381 3.619
20 O -0.431 6.431
21 C -0.201 4.201
22 C -0.209 4.209
23 C -0.070 4.070
24 C 0.016 3.984
25 C -0.199 4.199
26 C -0.206 4.206
27 C -0.200 4.200
28 O 0.052 5.948
29 N -0.048 5.048
30 H 0.073 0.927
31 H 0.093 0.907
32 H 0.074 0.926
33 H 0.008 0.992
34 H 0.090 0.910
35 H 0.058 0.942
36 H 0.038 0.962
37 H 0.040 0.960
38 H 0.080 0.920
39 H 0.105 0.895
40 H 0.248 0.752
41 H 0.209 0.791
42 H 0.076 0.924
43 H 0.112 0.888
44 H 0.082 0.918
45 H 0.077 0.923
46 H 0.109 0.891
47 H 0.080 0.920
48 H 0.082 0.918
49 H 0.112 0.888
50 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges -1.562 -0.858 29.716 29.769
hybrid contribution 0.787 -0.079 -1.068 1.329
sum -0.775 -0.936 28.648 28.674
Atomic orbital electron populations
1.21611 0.92587 1.02032 1.02296 1.22442 0.96861 0.98460 0.94106
0.91146 1.21781 0.83565 0.95005 0.95998 1.44863 1.10612 1.79116
1.00875 1.19385 0.91912 1.37760 0.88091 0.90545 1.25643 0.99845
1.02369 0.98061 1.70043 1.24016 1.54584 1.10972 0.85119 0.78348
0.78121 0.77533 1.20470 1.21672 1.20379 1.21547 0.95682 0.97360
0.84274 1.22343 0.96429 0.98618 0.93568 0.88883 1.21381 1.00878
0.92918 0.82823 1.45910 1.67855 1.13081 1.08542 1.17080 0.77066
0.86028 0.81710 1.90772 1.52903 1.14909 1.84548 1.23449 1.08203
0.91160 0.97325 1.22534 1.05949 1.02176 0.90284 1.25112 1.00679
0.85515 0.95730 1.19442 0.97970 0.99277 0.81747 1.21981 0.95882
1.01689 1.00311 1.21951 1.02354 0.92686 1.03650 1.21993 0.95138
0.99021 1.03847 1.84753 1.61722 1.35326 1.12962 1.74200 1.14643
1.13661 1.02289 0.92695 0.90662 0.92559 0.99208 0.91050 0.94237
0.96196 0.96011 0.91985 0.89505 0.75167 0.79139 0.92369 0.88801
0.91802 0.92281 0.89149 0.92040 0.91819 0.88756 0.92623
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.73 9.29 71.98 0.67 -3.06 16
2 C -0.10 -3.62 3.09 -9.40 -0.03 -3.65 16
3 H 0.07 2.62 8.05 -2.38 -0.02 2.60 16
4 C 0.16 8.03 5.35 86.85 0.47 8.49 16
5 N -0.63 -33.34 3.40 -691.31 -2.35 -35.69 16
6 C -0.24 -14.03 10.28 84.03 0.86 -13.16 16
7 H 0.08 4.27 7.83 -2.91 -0.02 4.24 16
8 C -0.07 -3.86 5.49 84.86 0.47 -3.39 16
9 N -0.95 -57.18 10.09 21.65 0.22 -56.96 16
10 Si 0.98 46.59 29.55 68.60 2.03 48.61 16
11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16
12 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16
13 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16
14 C 0.14 5.76 6.77 86.68 0.59 6.35 16
15 C -0.09 -3.01 2.43 -9.60 -0.02 -3.04 16
16 H 0.09 2.87 8.01 -2.39 -0.02 2.85 16
17 C 0.14 4.21 5.02 86.38 0.43 4.64 16
18 N -0.70 -19.82 5.47 -465.50 -2.55 -22.37 16
19 C 0.60 17.82 7.85 86.93 0.68 18.50 16
20 O -0.55 -19.21 16.95 -3.71 -0.06 -19.28 16
21 C -0.04 -1.13 7.19 42.96 0.31 -0.82 16
22 C -0.19 -3.71 10.40 22.60 0.24 -3.48 16
23 C -0.01 -0.11 5.76 25.01 0.14 0.03 16
24 C 0.02 0.15 0.94 -52.93 -0.05 0.10 16
25 C -0.14 -0.91 8.36 71.98 0.60 -0.30 16
26 C -0.15 -1.10 8.07 71.98 0.58 -0.51 16
27 C -0.14 -1.01 8.36 71.98 0.60 -0.41 16
28 O 0.13 2.69 10.65 71.89 0.77 3.45 16
29 N -0.35 -8.78 11.84 -49.52 -0.59 -9.36 16
30 H 0.05 1.57 8.11 -2.39 -0.02 1.55 16
31 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16
32 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16
33 H -0.01 -0.53 8.04 -2.39 -0.02 -0.55 16
34 H 0.07 4.07 5.86 -2.39 -0.01 4.06 16
35 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16
36 H 0.02 0.86 7.68 -2.38 -0.02 0.84 16
37 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16
38 H 0.06 2.01 7.93 -2.39 -0.02 1.99 16
39 H 0.09 2.34 8.14 -2.38 -0.02 2.32 16
40 H 0.41 10.94 8.23 -92.71 -0.76 10.18 16
41 H 0.19 3.17 8.06 -2.91 -0.02 3.15 16
42 H 0.06 0.45 8.14 -2.38 -0.02 0.43 16
43 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16
44 H 0.06 0.44 8.04 -2.38 -0.02 0.42 16
45 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16
46 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16
47 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16
48 H 0.06 0.48 8.02 -2.38 -0.02 0.46 16
49 H 0.09 0.28 8.14 -2.39 -0.02 0.27 16
50 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16
Total: -1.00 -71.85 405.67 4.16 -67.69
By element:
Atomic # 1 Polarization: 17.45 SS G_CDS: 0.16 Total: 17.61 kcal
Atomic # 6 Polarization: -0.25 SS G_CDS: 6.54 Total: 6.29 kcal
Atomic # 7 Polarization: -119.12 SS G_CDS: -5.27 Total: -124.39 kcal
Atomic # 8 Polarization: -16.52 SS G_CDS: 0.70 Total: -15.82 kcal
Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.61 kcal
Total: -71.85 4.16 -67.69 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001092816580.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 79.866 kcal
(2) G-P(sol) polarization free energy of solvation -71.854 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.012 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.162 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.692 kcal
(6) G-S(sol) free energy of system = (1) + (5) 12.174 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds