Wall clock time and date at job start Tue Mar 31 2020 18:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 110.88445 * 2 1 4 4 C 1.54908 * 111.00368 * 236.12120 * 2 1 3 5 5 N 1.47425 * 104.92961 * 204.85960 * 4 2 1 6 6 C 1.36938 * 125.65179 * 204.15650 * 5 4 2 7 7 H 1.07995 * 120.00281 * 180.02562 * 6 5 4 8 8 C 1.38810 * 119.99650 * 0.02562 * 6 5 4 9 9 N 1.31621 * 120.00025 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00113 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47166 * 59.99694 * 10 8 6 12 12 H 1.48493 * 109.47565 * 179.97438 * 10 8 6 13 13 H 1.48505 * 109.47135 * 300.00010 * 10 8 6 14 14 C 1.47290 * 108.55742 * 24.15407 * 5 4 2 15 15 C 1.54325 * 107.30599 * 358.92448 * 14 5 4 16 16 H 1.08997 * 110.72163 * 96.18354 * 15 14 5 17 17 C 1.53003 * 110.72022 * 219.45263 * 15 14 5 18 18 N 1.46494 * 109.47093 * 288.52410 * 17 15 14 19 19 C 1.34776 * 119.99924 * 180.02562 * 18 17 15 20 20 O 1.21498 * 120.00082 * 0.02562 * 19 18 17 21 21 C 1.48333 * 120.00441 * 179.97438 * 19 18 17 22 22 C 1.42266 * 126.94114 * 179.70588 * 21 19 18 23 23 C 1.35324 * 103.92178 * 179.88983 * 22 21 19 24 24 C 1.50695 * 126.66444 * 180.08449 * 23 22 21 25 25 C 1.52993 * 109.47466 * 60.32135 * 24 23 22 26 26 C 1.53006 * 109.46868 * 180.32372 * 24 23 22 27 27 C 1.52998 * 109.47224 * 300.32062 * 24 23 22 28 28 O 1.34016 * 106.66251 * 0.37354 * 23 22 21 29 29 N 1.20895 * 111.85124 * 359.74895 * 28 23 22 30 30 H 1.09001 * 109.47276 * 182.42937 * 1 2 3 31 31 H 1.09003 * 109.46690 * 302.42477 * 1 2 3 32 32 H 1.08998 * 109.47248 * 62.42638 * 1 2 3 33 33 H 1.09002 * 110.36632 * 323.75356 * 4 2 1 34 34 H 1.08995 * 110.36781 * 85.96593 * 4 2 1 35 35 H 0.97001 * 119.99611 * 180.02562 * 9 8 6 36 36 H 1.09004 * 109.85762 * 239.50064 * 14 5 4 37 37 H 1.08999 * 109.87327 * 118.35916 * 14 5 4 38 38 H 1.09000 * 109.46700 * 48.52364 * 17 15 14 39 39 H 1.09004 * 109.46934 * 168.52488 * 17 15 14 40 40 H 0.96994 * 120.00707 * 0.02562 * 18 17 15 41 41 H 1.07998 * 128.03890 * 0.02994 * 22 21 19 42 42 H 1.09010 * 109.46800 * 59.99814 * 25 24 23 43 43 H 1.08998 * 109.47583 * 179.97438 * 25 24 23 44 44 H 1.09005 * 109.47342 * 300.00239 * 25 24 23 45 45 H 1.08994 * 109.46779 * 60.00015 * 26 24 23 46 46 H 1.09000 * 109.46760 * 179.97438 * 26 24 23 47 47 H 1.09000 * 109.46906 * 299.99926 * 26 24 23 48 48 H 1.09005 * 109.47399 * 60.00012 * 27 24 23 49 49 H 1.09000 * 109.47491 * 180.02562 * 27 24 23 50 50 H 1.09003 * 109.47497 * 300.00466 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0185 0.0000 4 6 2.0852 -0.8061 -1.2006 5 7 3.4280 -1.2427 -0.7766 6 6 4.4637 -1.5645 -1.6126 7 1 5.4129 -1.8750 -1.2017 8 6 4.2935 -1.4915 -2.9883 9 7 3.1367 -1.1126 -3.4891 10 14 5.7060 -1.9310 -4.1289 11 1 6.1137 -3.3392 -3.8920 12 1 5.2707 -1.7729 -5.5397 13 1 6.8566 -1.0310 -3.8615 14 6 3.4675 -1.2744 0.6955 15 6 2.0862 -0.8083 1.2019 16 1 1.4468 -1.6636 1.4204 17 6 2.2350 0.0867 2.4339 18 7 2.6469 -0.7260 3.5810 19 6 2.8403 -0.1468 4.7825 20 8 2.6726 1.0493 4.9143 21 6 3.2568 -0.9696 5.9442 22 6 3.5065 -0.5145 7.2688 23 6 3.8494 -1.6384 7.9400 24 6 4.2183 -1.7387 9.3977 25 6 3.0443 -1.2617 10.2550 26 6 4.5437 -3.1935 9.7424 27 6 5.4417 -0.8629 9.6756 28 8 3.8032 -2.6437 7.0550 29 7 3.4747 -2.2612 5.9563 30 1 -0.3634 -1.0267 0.0436 31 1 -0.3633 0.5511 0.8675 32 1 -0.3633 0.4757 -0.9109 33 1 1.4518 -1.6698 -1.4031 34 1 2.1541 -0.1717 -2.0842 35 1 3.0177 -1.0619 -4.4504 36 1 4.2427 -0.6001 1.0596 37 1 3.6651 -2.2897 1.0391 38 1 2.9889 0.8497 2.2396 39 1 1.2807 0.5661 2.6521 40 1 2.7805 -1.6809 3.4759 41 1 3.4364 0.4934 7.6504 42 1 2.1727 -1.8857 10.0569 43 1 3.3110 -1.3347 11.3093 44 1 2.8125 -0.2253 10.0093 45 1 5.3801 -3.5332 9.1317 46 1 4.8109 -3.2660 10.7966 47 1 3.6721 -3.8174 9.5444 48 1 5.2100 0.1735 9.4300 49 1 5.7088 -0.9358 10.7298 50 1 6.2781 -1.2027 9.0648 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092816580.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:09 Heat of formation + Delta-G solvation = 12.174001 kcal Electronic energy + Delta-G solvation = -28845.434237 eV Core-core repulsion = 24875.341502 eV Total energy + Delta-G solvation = -3970.092735 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -46.23198 -40.97407 -39.59633 -38.28363 -36.23697 -35.16234 -34.66557 -32.58480 -32.03770 -30.87555 -28.34867 -28.15431 -27.93961 -26.99231 -25.61737 -24.27780 -24.18428 -22.48108 -21.59248 -21.32511 -20.35845 -18.91693 -18.88663 -18.33813 -17.92789 -17.30489 -16.84838 -16.53104 -15.99047 -15.78420 -15.58581 -15.16069 -14.97568 -14.87267 -14.75319 -14.61622 -14.40555 -14.08232 -13.59290 -13.42167 -13.23180 -13.20158 -13.08493 -12.80511 -12.72210 -12.68812 -12.55221 -12.51498 -12.26499 -12.03060 -12.01164 -11.90239 -11.78215 -11.73612 -11.61741 -11.57327 -11.45578 -11.12195 -10.76223 -10.49153 -10.31230 -8.91535 -7.79499 -5.24466 -0.02829 0.60495 1.43887 1.47181 1.53687 1.71387 1.92801 1.96400 2.46905 2.80685 3.28692 3.31525 3.56102 3.71362 3.80433 3.81766 3.91075 3.93261 3.96621 4.00806 4.22896 4.31238 4.39854 4.45406 4.56480 4.69156 4.71610 4.79513 4.79569 4.80655 4.81642 4.90287 4.91061 5.01877 5.02192 5.04084 5.08084 5.11047 5.21802 5.30712 5.34538 5.35321 5.40481 5.43400 5.46230 5.69726 5.81576 6.17623 6.29585 6.79650 6.97248 7.08657 7.75294 8.39592 9.21636 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017723 B = 0.002183 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.466225 B =12821.375640 C =13836.328774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.099 4.099 3 H 0.070 0.930 4 C 0.161 3.839 5 N -0.629 5.629 6 C -0.243 4.243 7 H 0.077 0.923 8 C -0.067 4.067 9 N -0.947 5.947 10 Si 0.981 3.019 11 H -0.279 1.279 12 H -0.291 1.291 13 H -0.278 1.278 14 C 0.137 3.863 15 C -0.090 4.090 16 H 0.093 0.907 17 C 0.143 3.857 18 N -0.703 5.703 19 C 0.597 3.403 20 O -0.554 6.554 21 C -0.044 4.044 22 C -0.187 4.187 23 C -0.007 4.007 24 C 0.017 3.983 25 C -0.141 4.141 26 C -0.149 4.149 27 C -0.143 4.143 28 O 0.129 5.871 29 N -0.348 5.348 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.055 0.945 33 H -0.010 1.010 34 H 0.072 0.928 35 H 0.248 0.752 36 H 0.020 0.980 37 H 0.022 0.978 38 H 0.062 0.938 39 H 0.087 0.913 40 H 0.412 0.588 41 H 0.191 0.809 42 H 0.057 0.943 43 H 0.093 0.907 44 H 0.063 0.937 45 H 0.058 0.942 46 H 0.090 0.910 47 H 0.060 0.940 48 H 0.063 0.937 49 H 0.094 0.906 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.399 -0.784 30.886 30.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.119 4.119 3 H 0.089 0.911 4 C 0.037 3.963 5 N -0.355 5.355 6 C -0.371 4.371 7 H 0.095 0.905 8 C -0.259 4.259 9 N -0.596 5.596 10 Si 0.809 3.191 11 H -0.205 1.205 12 H -0.217 1.217 13 H -0.204 1.204 14 C 0.011 3.989 15 C -0.110 4.110 16 H 0.111 0.889 17 C 0.020 3.980 18 N -0.354 5.354 19 C 0.381 3.619 20 O -0.431 6.431 21 C -0.201 4.201 22 C -0.209 4.209 23 C -0.070 4.070 24 C 0.016 3.984 25 C -0.199 4.199 26 C -0.206 4.206 27 C -0.200 4.200 28 O 0.052 5.948 29 N -0.048 5.048 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.008 0.992 34 H 0.090 0.910 35 H 0.058 0.942 36 H 0.038 0.962 37 H 0.040 0.960 38 H 0.080 0.920 39 H 0.105 0.895 40 H 0.248 0.752 41 H 0.209 0.791 42 H 0.076 0.924 43 H 0.112 0.888 44 H 0.082 0.918 45 H 0.077 0.923 46 H 0.109 0.891 47 H 0.080 0.920 48 H 0.082 0.918 49 H 0.112 0.888 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.562 -0.858 29.716 29.769 hybrid contribution 0.787 -0.079 -1.068 1.329 sum -0.775 -0.936 28.648 28.674 Atomic orbital electron populations 1.21611 0.92587 1.02032 1.02296 1.22442 0.96861 0.98460 0.94106 0.91146 1.21781 0.83565 0.95005 0.95998 1.44863 1.10612 1.79116 1.00875 1.19385 0.91912 1.37760 0.88091 0.90545 1.25643 0.99845 1.02369 0.98061 1.70043 1.24016 1.54584 1.10972 0.85119 0.78348 0.78121 0.77533 1.20470 1.21672 1.20379 1.21547 0.95682 0.97360 0.84274 1.22343 0.96429 0.98618 0.93568 0.88883 1.21381 1.00878 0.92918 0.82823 1.45910 1.67855 1.13081 1.08542 1.17080 0.77066 0.86028 0.81710 1.90772 1.52903 1.14909 1.84548 1.23449 1.08203 0.91160 0.97325 1.22534 1.05949 1.02176 0.90284 1.25112 1.00679 0.85515 0.95730 1.19442 0.97970 0.99277 0.81747 1.21981 0.95882 1.01689 1.00311 1.21951 1.02354 0.92686 1.03650 1.21993 0.95138 0.99021 1.03847 1.84753 1.61722 1.35326 1.12962 1.74200 1.14643 1.13661 1.02289 0.92695 0.90662 0.92559 0.99208 0.91050 0.94237 0.96196 0.96011 0.91985 0.89505 0.75167 0.79139 0.92369 0.88801 0.91802 0.92281 0.89149 0.92040 0.91819 0.88756 0.92623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.73 9.29 71.98 0.67 -3.06 16 2 C -0.10 -3.62 3.09 -9.40 -0.03 -3.65 16 3 H 0.07 2.62 8.05 -2.38 -0.02 2.60 16 4 C 0.16 8.03 5.35 86.85 0.47 8.49 16 5 N -0.63 -33.34 3.40 -691.31 -2.35 -35.69 16 6 C -0.24 -14.03 10.28 84.03 0.86 -13.16 16 7 H 0.08 4.27 7.83 -2.91 -0.02 4.24 16 8 C -0.07 -3.86 5.49 84.86 0.47 -3.39 16 9 N -0.95 -57.18 10.09 21.65 0.22 -56.96 16 10 Si 0.98 46.59 29.55 68.60 2.03 48.61 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 12 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 13 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 14 C 0.14 5.76 6.77 86.68 0.59 6.35 16 15 C -0.09 -3.01 2.43 -9.60 -0.02 -3.04 16 16 H 0.09 2.87 8.01 -2.39 -0.02 2.85 16 17 C 0.14 4.21 5.02 86.38 0.43 4.64 16 18 N -0.70 -19.82 5.47 -465.50 -2.55 -22.37 16 19 C 0.60 17.82 7.85 86.93 0.68 18.50 16 20 O -0.55 -19.21 16.95 -3.71 -0.06 -19.28 16 21 C -0.04 -1.13 7.19 42.96 0.31 -0.82 16 22 C -0.19 -3.71 10.40 22.60 0.24 -3.48 16 23 C -0.01 -0.11 5.76 25.01 0.14 0.03 16 24 C 0.02 0.15 0.94 -52.93 -0.05 0.10 16 25 C -0.14 -0.91 8.36 71.98 0.60 -0.30 16 26 C -0.15 -1.10 8.07 71.98 0.58 -0.51 16 27 C -0.14 -1.01 8.36 71.98 0.60 -0.41 16 28 O 0.13 2.69 10.65 71.89 0.77 3.45 16 29 N -0.35 -8.78 11.84 -49.52 -0.59 -9.36 16 30 H 0.05 1.57 8.11 -2.39 -0.02 1.55 16 31 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 33 H -0.01 -0.53 8.04 -2.39 -0.02 -0.55 16 34 H 0.07 4.07 5.86 -2.39 -0.01 4.06 16 35 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 36 H 0.02 0.86 7.68 -2.38 -0.02 0.84 16 37 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.06 2.01 7.93 -2.39 -0.02 1.99 16 39 H 0.09 2.34 8.14 -2.38 -0.02 2.32 16 40 H 0.41 10.94 8.23 -92.71 -0.76 10.18 16 41 H 0.19 3.17 8.06 -2.91 -0.02 3.15 16 42 H 0.06 0.45 8.14 -2.38 -0.02 0.43 16 43 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 44 H 0.06 0.44 8.04 -2.38 -0.02 0.42 16 45 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 46 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 47 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 48 H 0.06 0.48 8.02 -2.38 -0.02 0.46 16 49 H 0.09 0.28 8.14 -2.39 -0.02 0.27 16 50 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 Total: -1.00 -71.85 405.67 4.16 -67.69 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: 0.16 Total: 17.61 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: 6.54 Total: 6.29 kcal Atomic # 7 Polarization: -119.12 SS G_CDS: -5.27 Total: -124.39 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: 0.70 Total: -15.82 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.61 kcal Total: -71.85 4.16 -67.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092816580.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.866 kcal (2) G-P(sol) polarization free energy of solvation -71.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds