Wall clock time and date at job start Tue Mar 31 2020 18:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 110.63839 * 2 1 4 4 C 1.54327 * 110.71957 * 236.66871 * 2 1 3 5 5 N 1.47019 * 107.26762 * 219.44376 * 4 2 1 6 6 C 1.36937 * 125.65011 * 178.92003 * 5 4 2 7 7 H 1.07999 * 120.00515 * 180.02562 * 6 5 4 8 8 C 1.38810 * 119.99736 * 0.02586 * 6 5 4 9 9 N 1.31616 * 120.00260 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00159 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47112 * 359.97438 * 10 8 6 12 12 H 1.48504 * 109.46958 * 119.99430 * 10 8 6 13 13 H 1.48500 * 109.47376 * 239.99680 * 10 8 6 14 14 C 1.47428 * 108.70606 * 358.93739 * 5 4 2 15 15 C 1.54917 * 104.82976 * 24.13094 * 14 5 4 16 16 H 1.08996 * 111.03444 * 81.07586 * 15 14 5 17 17 C 1.52992 * 111.00400 * 204.91439 * 15 14 5 18 18 N 1.46504 * 109.47497 * 287.19895 * 17 15 14 19 19 C 1.34777 * 120.00214 * 180.02562 * 18 17 15 20 20 O 1.21604 * 119.99868 * 359.97438 * 19 18 17 21 21 C 1.47423 * 119.99646 * 179.97438 * 19 18 17 22 22 N 1.36059 * 126.45071 * 354.48797 * 21 19 18 23 23 C 1.29939 * 108.47985 * 179.97438 * 22 21 19 24 24 O 1.34052 * 109.24054 * 359.97438 * 23 22 21 25 25 C 1.34263 * 108.22669 * 0.02562 * 24 23 22 26 26 C 1.50693 * 126.52453 * 180.02562 * 25 24 23 27 27 C 1.52994 * 109.47240 * 241.43400 * 26 25 24 28 28 C 1.52998 * 109.47347 * 1.43649 * 26 25 24 29 29 C 1.53004 * 109.47008 * 121.43369 * 26 25 24 30 30 H 1.08999 * 109.47395 * 296.85540 * 1 2 3 31 31 H 1.09003 * 109.46933 * 56.85995 * 1 2 3 32 32 H 1.08996 * 109.47211 * 176.85264 * 1 2 3 33 33 H 1.08995 * 109.88059 * 338.85801 * 4 2 1 34 34 H 1.08995 * 109.88059 * 99.87318 * 4 2 1 35 35 H 0.97003 * 120.01060 * 180.02562 * 9 8 6 36 36 H 1.08999 * 110.36938 * 265.29530 * 14 5 4 37 37 H 1.08998 * 110.36761 * 142.96839 * 14 5 4 38 38 H 1.09000 * 109.47199 * 167.19527 * 17 15 14 39 39 H 1.09000 * 109.47347 * 47.19659 * 17 15 14 40 40 H 0.97002 * 119.99516 * 359.97438 * 18 17 15 41 41 H 1.07995 * 125.38283 * 180.26724 * 23 22 21 42 42 H 1.09003 * 109.47073 * 69.96144 * 27 26 25 43 43 H 1.09002 * 109.47373 * 189.95738 * 27 26 25 44 44 H 1.09001 * 109.47555 * 309.95965 * 27 26 25 45 45 H 1.09003 * 109.47127 * 59.99899 * 28 26 25 46 46 H 1.09005 * 109.47499 * 179.97438 * 28 26 25 47 47 H 1.08997 * 109.47072 * 299.99780 * 28 26 25 48 48 H 1.09000 * 109.46918 * 65.25716 * 29 26 25 49 49 H 1.09008 * 109.46844 * 185.24639 * 29 26 25 50 50 H 1.08999 * 109.47540 * 305.24595 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0760 -0.7932 -1.2060 5 7 3.2445 -1.5519 -0.7365 6 6 4.0037 -2.4002 -1.4975 7 1 4.8457 -2.9135 -1.0572 8 6 3.6910 -2.6004 -2.8350 9 7 2.6646 -1.9752 -3.3717 10 14 4.7270 -3.7570 -3.8735 11 1 5.8144 -4.3304 -3.0405 12 1 3.8722 -4.8534 -4.3955 13 1 5.3184 -3.0063 -5.0102 14 6 3.4633 -1.2486 0.6896 15 6 2.0789 -0.7934 1.2151 16 1 1.4448 -1.6508 1.4406 17 6 2.2277 0.1120 2.4393 18 7 2.6328 -0.6920 3.5951 19 6 2.8250 -0.1028 4.7919 20 8 2.6625 1.0963 4.9123 21 6 3.2321 -0.9120 5.9550 22 7 3.3487 -2.2670 5.9960 23 6 3.7296 -2.6116 7.1896 24 8 3.8693 -1.5120 7.9434 25 6 3.5629 -0.4442 7.1894 26 6 3.5827 0.9978 7.6265 27 6 2.1760 1.5869 7.5049 28 6 4.0474 1.0834 9.0817 29 6 4.5449 1.7873 6.7366 30 1 -0.3634 0.4642 0.9168 31 1 -0.3633 0.5618 -0.8605 32 1 -0.3633 -1.0261 -0.0564 33 1 1.3130 -1.4784 -1.5751 34 1 2.3716 -0.1058 -1.9986 35 1 2.4458 -2.1153 -4.3062 36 1 4.1931 -0.4464 0.7992 37 1 3.7961 -2.1405 1.2204 38 1 1.2748 0.5973 2.6504 39 1 2.9853 0.8701 2.2407 40 1 2.7621 -1.6486 3.4991 41 1 3.9101 -3.6236 7.5205 42 1 1.5302 1.1453 8.2639 43 1 2.2204 2.6665 7.6490 44 1 1.7749 1.3688 6.5151 45 1 5.0497 0.6637 9.1683 46 1 4.0621 2.1265 9.3977 47 1 3.3619 0.5210 9.7156 48 1 4.1640 1.8048 5.7155 49 1 4.6305 2.8079 7.1099 50 1 5.5257 1.3120 6.7506 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093117999.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:16 Heat of formation + Delta-G solvation = 3.236002 kcal Electronic energy + Delta-G solvation = -29763.143311 eV Core-core repulsion = 25792.662995 eV Total energy + Delta-G solvation = -3970.480316 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.72142 -39.73730 -38.08145 -37.06536 -35.03280 -34.60778 -32.89915 -30.71173 -30.20487 -29.14570 -27.54662 -27.41672 -26.08403 -25.36692 -24.01926 -23.16209 -22.54784 -20.94163 -20.04025 -19.74793 -19.22504 -18.25671 -17.01123 -16.80573 -16.26043 -16.03805 -15.50271 -15.32766 -14.92232 -14.64269 -14.32698 -14.11220 -13.83810 -13.73741 -13.46975 -13.29460 -12.89445 -12.53879 -12.50643 -12.36809 -11.95590 -11.88635 -11.77454 -11.68960 -11.38674 -11.32818 -11.27673 -11.20763 -11.15825 -10.83308 -10.79703 -10.73789 -10.13429 -9.98978 -9.94994 -9.88497 -9.68088 -9.53577 -9.18638 -8.84411 -8.58659 -6.80598 -5.69294 -3.02522 0.91665 1.85308 2.28797 3.14272 3.21653 3.40810 3.46390 3.48786 3.84002 4.19569 4.49864 4.51460 4.66146 4.75841 4.85494 5.12321 5.23036 5.25141 5.33835 5.35240 5.41358 5.42368 5.54854 5.58207 5.60382 5.64669 5.75552 5.77904 5.79374 5.82223 5.90633 5.91588 6.04337 6.08510 6.19396 6.23073 6.28432 6.31260 6.50098 6.58436 6.61476 6.65723 6.78704 6.97340 7.18510 7.58769 7.59711 7.66350 7.86176 8.18621 8.28158 9.24430 9.84687 10.50921 11.42415 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017850 B = 0.002542 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.291879 B =11010.940529 C =11858.611619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.110 4.110 3 H 0.068 0.932 4 C 0.184 3.816 5 N -0.606 5.606 6 C -0.226 4.226 7 H 0.078 0.922 8 C -0.009 4.009 9 N -0.922 5.922 10 Si 0.911 3.089 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.291 1.291 14 C 0.142 3.858 15 C -0.113 4.113 16 H 0.081 0.919 17 C 0.132 3.868 18 N -0.703 5.703 19 C 0.596 3.404 20 O -0.526 6.526 21 C -0.074 4.074 22 N -0.460 5.460 23 C 0.170 3.830 24 O -0.197 6.197 25 C 0.055 3.945 26 C 0.023 3.977 27 C -0.153 4.153 28 C -0.146 4.146 29 C -0.159 4.159 30 H 0.044 0.956 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.049 0.951 34 H 0.041 0.959 35 H 0.251 0.749 36 H 0.019 0.981 37 H 0.036 0.964 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.410 0.590 41 H 0.254 0.746 42 H 0.047 0.953 43 H 0.067 0.933 44 H 0.097 0.903 45 H 0.058 0.942 46 H 0.067 0.933 47 H 0.058 0.942 48 H 0.101 0.899 49 H 0.066 0.934 50 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.885 4.702 24.668 25.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.130 4.130 3 H 0.086 0.914 4 C 0.059 3.941 5 N -0.332 5.332 6 C -0.354 4.354 7 H 0.095 0.905 8 C -0.205 4.205 9 N -0.570 5.570 10 Si 0.742 3.258 11 H -0.205 1.205 12 H -0.218 1.218 13 H -0.218 1.218 14 C 0.015 3.985 15 C -0.133 4.133 16 H 0.099 0.901 17 C 0.009 3.991 18 N -0.353 5.353 19 C 0.382 3.618 20 O -0.406 6.406 21 C -0.194 4.194 22 N -0.189 5.189 23 C -0.059 4.059 24 O -0.083 6.083 25 C -0.002 4.002 26 C 0.023 3.977 27 C -0.210 4.210 28 C -0.203 4.203 29 C -0.215 4.215 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.036 0.964 37 H 0.055 0.945 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.246 0.754 41 H 0.270 0.730 42 H 0.066 0.934 43 H 0.086 0.914 44 H 0.115 0.885 45 H 0.077 0.923 46 H 0.086 0.914 47 H 0.078 0.922 48 H 0.119 0.881 49 H 0.085 0.915 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.102 5.040 23.992 24.541 hybrid contribution 0.826 -1.075 -0.050 1.357 sum -0.276 3.965 23.942 24.270 Atomic orbital electron populations 1.21697 0.95320 1.01638 1.00527 1.22438 0.95142 0.99086 0.96287 0.91397 1.21214 0.89106 0.93074 0.90711 1.44470 1.32604 1.51404 1.04757 1.19103 1.07529 1.17491 0.91326 0.90461 1.24797 0.98462 1.00382 0.96907 1.69969 1.28800 1.45618 1.12563 0.86056 0.79290 0.80144 0.80353 1.20538 1.21786 1.21792 1.21586 0.92968 0.97109 0.86802 1.22677 0.99501 0.98098 0.93020 0.90088 1.21479 1.00267 0.93767 0.83591 1.45914 1.67848 1.12922 1.08581 1.16686 0.77379 0.86133 0.81567 1.90610 1.52418 1.13711 1.83848 1.21489 1.12068 0.89997 0.95867 1.70758 1.15888 1.11384 1.20860 1.28016 1.00333 0.92462 0.85093 1.84372 1.66452 1.15415 1.42073 1.23881 0.97326 0.89692 0.89275 1.19231 0.98946 0.83188 0.96367 1.22194 0.93189 1.00725 1.04898 1.21941 1.01550 1.02656 0.94157 1.22239 0.97313 0.98916 1.03068 0.93669 0.92771 0.92714 0.93318 0.94045 0.93842 0.96355 0.94545 0.91319 0.91064 0.75419 0.73012 0.93368 0.91369 0.88463 0.92252 0.91362 0.92245 0.88080 0.91462 0.93235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.09 9.16 37.16 0.34 -1.75 16 2 C -0.11 -1.98 3.02 -88.78 -0.27 -2.25 16 3 H 0.07 1.18 8.04 -51.93 -0.42 0.76 16 4 C 0.18 4.41 4.97 -3.06 -0.02 4.40 16 5 N -0.61 -15.48 3.39 -170.07 -0.58 -16.06 16 6 C -0.23 -6.34 10.28 -15.06 -0.15 -6.50 16 7 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 8 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 9 N -0.92 -27.16 10.31 55.49 0.57 -26.59 16 10 Si 0.91 22.26 29.55 -169.99 -5.02 17.23 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 14 C 0.14 2.90 6.65 -2.52 -0.02 2.88 16 15 C -0.11 -1.90 2.50 -88.47 -0.22 -2.12 16 16 H 0.08 1.37 8.05 -51.93 -0.42 0.95 16 17 C 0.13 1.90 5.13 -4.04 -0.02 1.88 16 18 N -0.70 -9.74 5.50 -61.39 -0.34 -10.07 16 19 C 0.60 8.34 7.36 -12.52 -0.09 8.25 16 20 O -0.53 -7.73 10.06 5.27 0.05 -7.68 16 21 C -0.07 -0.96 6.79 -83.02 -0.56 -1.52 16 22 N -0.46 -5.52 11.07 -11.48 -0.13 -5.64 16 23 C 0.17 1.46 13.19 51.96 0.69 2.14 16 24 O -0.20 -1.93 10.19 6.49 0.07 -1.86 16 25 C 0.06 0.62 5.73 -35.08 -0.20 0.42 16 26 C 0.02 0.23 0.75 -155.67 -0.12 0.11 16 27 C -0.15 -1.52 8.18 37.15 0.30 -1.22 16 28 C -0.15 -1.12 8.05 37.16 0.30 -0.82 16 29 C -0.16 -1.63 8.19 37.16 0.30 -1.32 16 30 H 0.04 0.60 8.10 -51.93 -0.42 0.18 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.05 0.88 8.06 -51.93 -0.42 0.46 16 33 H 0.05 1.29 7.00 -51.93 -0.36 0.93 16 34 H 0.04 1.11 7.51 -51.93 -0.39 0.72 16 35 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 36 H 0.02 0.39 7.91 -51.93 -0.41 -0.02 16 37 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 39 H 0.07 1.07 7.96 -51.93 -0.41 0.66 16 40 H 0.41 5.60 8.21 -40.82 -0.34 5.26 16 41 H 0.25 0.84 8.06 -52.49 -0.42 0.42 16 42 H 0.05 0.43 8.11 -51.93 -0.42 0.01 16 43 H 0.07 0.59 8.11 -51.93 -0.42 0.17 16 44 H 0.10 1.19 4.67 -51.93 -0.24 0.95 16 45 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 47 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.10 1.28 4.63 -51.93 -0.24 1.04 16 49 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 50 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 392.49 15.07 5.91 5.91 Total: -1.00 -32.15 392.49 -7.55 -39.70 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -8.26 Total: 2.82 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: 0.17 Total: 2.23 kcal Atomic # 7 Polarization: -57.89 SS G_CDS: -0.47 Total: -58.36 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.12 Total: -9.54 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.15 -7.55 -39.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093117999.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.938 kcal (2) G-P(sol) polarization free energy of solvation -32.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds