Wall clock time and date at job start Tue Mar 31 2020 18:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 110.63839 * 2 1 4 4 C 1.54327 * 110.71957 * 236.66871 * 2 1 3 5 5 N 1.47019 * 107.26762 * 219.44376 * 4 2 1 6 6 C 1.36937 * 125.65011 * 178.92003 * 5 4 2 7 7 H 1.07999 * 120.00515 * 180.02562 * 6 5 4 8 8 C 1.38810 * 119.99736 * 0.02586 * 6 5 4 9 9 N 1.31616 * 120.00260 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00159 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47112 * 359.97438 * 10 8 6 12 12 H 1.48504 * 109.46958 * 119.99430 * 10 8 6 13 13 H 1.48500 * 109.47376 * 239.99680 * 10 8 6 14 14 C 1.47428 * 108.70606 * 358.93739 * 5 4 2 15 15 C 1.54917 * 104.82976 * 24.13094 * 14 5 4 16 16 H 1.08996 * 111.03444 * 81.07586 * 15 14 5 17 17 C 1.52992 * 111.00400 * 204.91439 * 15 14 5 18 18 N 1.46504 * 109.47497 * 287.19895 * 17 15 14 19 19 C 1.34777 * 120.00214 * 180.02562 * 18 17 15 20 20 O 1.21604 * 119.99868 * 359.97438 * 19 18 17 21 21 C 1.47423 * 119.99646 * 179.97438 * 19 18 17 22 22 N 1.36059 * 126.45071 * 354.48797 * 21 19 18 23 23 C 1.29939 * 108.47985 * 179.97438 * 22 21 19 24 24 O 1.34052 * 109.24054 * 359.97438 * 23 22 21 25 25 C 1.34263 * 108.22669 * 0.02562 * 24 23 22 26 26 C 1.50693 * 126.52453 * 180.02562 * 25 24 23 27 27 C 1.52994 * 109.47240 * 241.43400 * 26 25 24 28 28 C 1.52998 * 109.47347 * 1.43649 * 26 25 24 29 29 C 1.53004 * 109.47008 * 121.43369 * 26 25 24 30 30 H 1.08999 * 109.47395 * 296.85540 * 1 2 3 31 31 H 1.09003 * 109.46933 * 56.85995 * 1 2 3 32 32 H 1.08996 * 109.47211 * 176.85264 * 1 2 3 33 33 H 1.08995 * 109.88059 * 338.85801 * 4 2 1 34 34 H 1.08995 * 109.88059 * 99.87318 * 4 2 1 35 35 H 0.97003 * 120.01060 * 180.02562 * 9 8 6 36 36 H 1.08999 * 110.36938 * 265.29530 * 14 5 4 37 37 H 1.08998 * 110.36761 * 142.96839 * 14 5 4 38 38 H 1.09000 * 109.47199 * 167.19527 * 17 15 14 39 39 H 1.09000 * 109.47347 * 47.19659 * 17 15 14 40 40 H 0.97002 * 119.99516 * 359.97438 * 18 17 15 41 41 H 1.07995 * 125.38283 * 180.26724 * 23 22 21 42 42 H 1.09003 * 109.47073 * 69.96144 * 27 26 25 43 43 H 1.09002 * 109.47373 * 189.95738 * 27 26 25 44 44 H 1.09001 * 109.47555 * 309.95965 * 27 26 25 45 45 H 1.09003 * 109.47127 * 59.99899 * 28 26 25 46 46 H 1.09005 * 109.47499 * 179.97438 * 28 26 25 47 47 H 1.08997 * 109.47072 * 299.99780 * 28 26 25 48 48 H 1.09000 * 109.46918 * 65.25716 * 29 26 25 49 49 H 1.09008 * 109.46844 * 185.24639 * 29 26 25 50 50 H 1.08999 * 109.47540 * 305.24595 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0760 -0.7932 -1.2060 5 7 3.2445 -1.5519 -0.7365 6 6 4.0037 -2.4002 -1.4975 7 1 4.8457 -2.9135 -1.0572 8 6 3.6910 -2.6004 -2.8350 9 7 2.6646 -1.9752 -3.3717 10 14 4.7270 -3.7570 -3.8735 11 1 5.8144 -4.3304 -3.0405 12 1 3.8722 -4.8534 -4.3955 13 1 5.3184 -3.0063 -5.0102 14 6 3.4633 -1.2486 0.6896 15 6 2.0789 -0.7934 1.2151 16 1 1.4448 -1.6508 1.4406 17 6 2.2277 0.1120 2.4393 18 7 2.6328 -0.6920 3.5951 19 6 2.8250 -0.1028 4.7919 20 8 2.6625 1.0963 4.9123 21 6 3.2321 -0.9120 5.9550 22 7 3.3487 -2.2670 5.9960 23 6 3.7296 -2.6116 7.1896 24 8 3.8693 -1.5120 7.9434 25 6 3.5629 -0.4442 7.1894 26 6 3.5827 0.9978 7.6265 27 6 2.1760 1.5869 7.5049 28 6 4.0474 1.0834 9.0817 29 6 4.5449 1.7873 6.7366 30 1 -0.3634 0.4642 0.9168 31 1 -0.3633 0.5618 -0.8605 32 1 -0.3633 -1.0261 -0.0564 33 1 1.3130 -1.4784 -1.5751 34 1 2.3716 -0.1058 -1.9986 35 1 2.4458 -2.1153 -4.3062 36 1 4.1931 -0.4464 0.7992 37 1 3.7961 -2.1405 1.2204 38 1 1.2748 0.5973 2.6504 39 1 2.9853 0.8701 2.2407 40 1 2.7621 -1.6486 3.4991 41 1 3.9101 -3.6236 7.5205 42 1 1.5302 1.1453 8.2639 43 1 2.2204 2.6665 7.6490 44 1 1.7749 1.3688 6.5151 45 1 5.0497 0.6637 9.1683 46 1 4.0621 2.1265 9.3977 47 1 3.3619 0.5210 9.7156 48 1 4.1640 1.8048 5.7155 49 1 4.6305 2.8079 7.1099 50 1 5.5257 1.3120 6.7506 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093117999.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:15 Heat of formation + Delta-G solvation = -19.088420 kcal Electronic energy + Delta-G solvation = -29764.111370 eV Core-core repulsion = 25792.662995 eV Total energy + Delta-G solvation = -3971.448376 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.49784 -40.83492 -39.60834 -37.88304 -35.99422 -35.83444 -34.62687 -32.54800 -31.25311 -30.39088 -28.21459 -28.18312 -27.88977 -26.85858 -25.30121 -24.01915 -23.85970 -22.02070 -21.59601 -20.95943 -20.36454 -19.26772 -18.75064 -17.80275 -17.30310 -17.21575 -16.64747 -16.46847 -16.10280 -15.86466 -15.65712 -15.38789 -15.02382 -14.84370 -14.62908 -14.44178 -14.29655 -14.13881 -13.45187 -13.39899 -13.14590 -13.11910 -13.03033 -12.86702 -12.71424 -12.62381 -12.60656 -12.41114 -12.17144 -12.03924 -12.00331 -11.90203 -11.84659 -11.61600 -11.53469 -11.39151 -11.30486 -10.84531 -10.71203 -10.11887 -9.83972 -8.89572 -7.85010 -5.20586 0.07055 1.06530 1.44887 1.45864 1.54626 1.56242 2.12619 2.24275 2.48757 3.13319 3.32673 3.43614 3.59930 3.69082 3.81292 3.92893 3.95022 3.95232 3.98092 4.11906 4.37475 4.49144 4.53055 4.56836 4.60775 4.73570 4.75245 4.77682 4.79874 4.85986 4.88779 4.95697 4.97132 5.01147 5.04120 5.09247 5.14420 5.19643 5.24130 5.31580 5.36371 5.44920 5.46848 5.47149 5.66626 5.72629 5.82142 6.20364 6.31510 6.60753 7.10758 7.13724 7.77901 8.42519 9.25328 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017850 B = 0.002542 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.291879 B =11010.940529 C =11858.611619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.099 4.099 3 H 0.078 0.922 4 C 0.192 3.808 5 N -0.629 5.629 6 C -0.241 4.241 7 H 0.080 0.920 8 C -0.067 4.067 9 N -0.950 5.950 10 Si 0.978 3.022 11 H -0.266 1.266 12 H -0.291 1.291 13 H -0.293 1.293 14 C 0.138 3.862 15 C -0.091 4.091 16 H 0.084 0.916 17 C 0.146 3.854 18 N -0.705 5.705 19 C 0.592 3.408 20 O -0.536 6.536 21 C -0.099 4.099 22 N -0.496 5.496 23 C 0.191 3.809 24 O -0.195 6.195 25 C 0.054 3.946 26 C 0.020 3.980 27 C -0.149 4.149 28 C -0.140 4.140 29 C -0.155 4.155 30 H 0.077 0.923 31 H 0.055 0.945 32 H 0.045 0.955 33 H 0.016 0.984 34 H 0.001 0.999 35 H 0.246 0.754 36 H 0.019 0.981 37 H 0.040 0.960 38 H 0.083 0.917 39 H 0.066 0.934 40 H 0.411 0.589 41 H 0.302 0.698 42 H 0.055 0.945 43 H 0.078 0.922 44 H 0.073 0.927 45 H 0.060 0.940 46 H 0.082 0.918 47 H 0.063 0.937 48 H 0.076 0.924 49 H 0.082 0.918 50 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.588 4.475 27.477 27.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.119 4.119 3 H 0.097 0.903 4 C 0.067 3.933 5 N -0.355 5.355 6 C -0.370 4.370 7 H 0.098 0.902 8 C -0.260 4.260 9 N -0.600 5.600 10 Si 0.806 3.194 11 H -0.190 1.190 12 H -0.218 1.218 13 H -0.220 1.220 14 C 0.013 3.987 15 C -0.111 4.111 16 H 0.102 0.898 17 C 0.023 3.977 18 N -0.355 5.355 19 C 0.380 3.620 20 O -0.416 6.416 21 C -0.217 4.217 22 N -0.225 5.225 23 C -0.038 4.038 24 O -0.081 6.081 25 C -0.003 4.003 26 C 0.020 3.980 27 C -0.206 4.206 28 C -0.197 4.197 29 C -0.212 4.212 30 H 0.096 0.904 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.034 0.966 34 H 0.019 0.981 35 H 0.056 0.944 36 H 0.036 0.964 37 H 0.058 0.942 38 H 0.101 0.899 39 H 0.084 0.916 40 H 0.246 0.754 41 H 0.317 0.683 42 H 0.074 0.926 43 H 0.097 0.903 44 H 0.091 0.909 45 H 0.079 0.921 46 H 0.101 0.899 47 H 0.082 0.918 48 H 0.095 0.905 49 H 0.101 0.899 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.799 4.822 26.834 27.276 hybrid contribution 0.785 -1.032 -0.861 1.557 sum -0.013 3.789 25.973 26.248 Atomic orbital electron populations 1.21644 0.92941 1.01579 1.02315 1.22311 0.97001 0.98639 0.93907 0.90323 1.20988 0.88015 0.91966 0.92373 1.44801 1.32727 1.51178 1.06805 1.19482 1.07848 1.17691 0.92016 0.90183 1.25652 0.99884 1.02295 0.98183 1.70193 1.30333 1.47027 1.12400 0.85017 0.77961 0.77945 0.78458 1.19043 1.21779 1.21971 1.21739 0.95211 0.97253 0.84471 1.22463 0.96874 0.98329 0.93420 0.89793 1.21250 1.00863 0.92896 0.82710 1.45845 1.68301 1.12839 1.08494 1.16889 0.77113 0.86213 0.81834 1.90619 1.52705 1.14170 1.84106 1.21396 1.13687 0.90623 0.96021 1.70738 1.17940 1.11040 1.22749 1.29128 0.97145 0.93574 0.83920 1.84404 1.66352 1.15440 1.41929 1.24109 0.96692 0.90577 0.88946 1.19322 0.98745 0.82335 0.97611 1.22127 0.93337 1.01524 1.03636 1.21906 1.01567 1.03792 0.92460 1.22178 0.97163 1.00029 1.01858 0.90433 0.92570 0.93553 0.96618 0.98052 0.94426 0.96359 0.94163 0.89913 0.91579 0.75360 0.68348 0.92582 0.90292 0.90872 0.92112 0.89882 0.91813 0.90534 0.89871 0.93393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.79 9.16 71.98 0.66 -3.14 16 2 C -0.10 -3.54 3.02 -9.60 -0.03 -3.57 16 3 H 0.08 2.67 8.04 -2.38 -0.02 2.65 16 4 C 0.19 9.56 4.97 86.73 0.43 9.99 16 5 N -0.63 -32.95 3.39 -691.99 -2.35 -35.30 16 6 C -0.24 -13.82 10.28 84.03 0.86 -12.96 16 7 H 0.08 4.41 7.83 -2.91 -0.02 4.38 16 8 C -0.07 -3.90 5.49 84.86 0.47 -3.44 16 9 N -0.95 -58.11 10.31 21.65 0.22 -57.89 16 10 Si 0.98 46.56 29.55 68.60 2.03 48.59 16 11 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 12 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 13 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 14 C 0.14 5.68 6.65 86.86 0.58 6.26 16 15 C -0.09 -2.99 2.50 -9.40 -0.02 -3.02 16 16 H 0.08 2.75 8.05 -2.39 -0.02 2.73 16 17 C 0.15 4.02 5.13 86.38 0.44 4.47 16 18 N -0.71 -18.98 5.50 -466.38 -2.56 -21.55 16 19 C 0.59 16.28 7.36 86.66 0.64 16.91 16 20 O -0.54 -15.53 10.06 -4.04 -0.04 -15.57 16 21 C -0.10 -2.45 6.79 40.41 0.27 -2.18 16 22 N -0.50 -11.17 11.07 -305.15 -3.38 -14.54 16 23 C 0.19 2.76 13.19 130.52 1.72 4.48 16 24 O -0.20 -3.35 10.19 0.31 0.00 -3.35 16 25 C 0.05 1.15 5.73 25.18 0.14 1.29 16 26 C 0.02 0.37 0.75 -52.93 -0.04 0.33 16 27 C -0.15 -2.76 8.18 71.98 0.59 -2.17 16 28 C -0.14 -1.80 8.05 71.98 0.58 -1.22 16 29 C -0.16 -3.02 8.19 71.98 0.59 -2.43 16 30 H 0.08 1.84 8.10 -2.39 -0.02 1.82 16 31 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.05 1.46 8.06 -2.39 -0.02 1.44 16 33 H 0.02 0.87 7.00 -2.39 -0.02 0.85 16 34 H 0.00 0.07 7.51 -2.39 -0.02 0.05 16 35 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 36 H 0.02 0.77 7.91 -2.39 -0.02 0.75 16 37 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.08 2.10 8.10 -2.39 -0.02 2.08 16 39 H 0.07 1.92 7.96 -2.39 -0.02 1.90 16 40 H 0.41 10.96 8.21 -92.71 -0.76 10.20 16 41 H 0.30 0.74 8.06 -2.91 -0.02 0.72 16 42 H 0.06 0.91 8.11 -2.39 -0.02 0.89 16 43 H 0.08 1.24 8.11 -2.39 -0.02 1.22 16 44 H 0.07 1.75 4.67 -2.39 -0.01 1.74 16 45 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 47 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 48 H 0.08 1.91 4.63 -2.39 -0.01 1.90 16 49 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 50 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -72.59 392.49 1.98 -70.61 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: 0.18 Total: 19.38 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: 7.88 Total: 9.62 kcal Atomic # 7 Polarization: -121.21 SS G_CDS: -8.07 Total: -129.27 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.04 Total: -18.92 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Total: -72.59 1.98 -70.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093117999.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.521 kcal (2) G-P(sol) polarization free energy of solvation -72.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds