Wall clock time and date at job start Tue Mar 31 2020 18:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46832 * 2 1 4 4 C 1.50706 * 109.47238 * 119.99686 * 2 1 3 5 5 O 1.21282 * 119.99865 * 119.99797 * 4 2 1 6 6 N 1.34774 * 120.00164 * 300.00292 * 4 2 1 7 7 C 1.46496 * 120.00140 * 179.97438 * 6 4 2 8 8 H 1.09004 * 110.85127 * 37.34109 * 7 6 4 9 9 C 1.54625 * 110.97483 * 273.54670 * 7 6 4 10 10 C 1.51273 * 104.19662 * 266.68048 * 9 7 6 11 11 O 1.21287 * 124.94369 * 163.70842 * 10 9 7 12 12 N 1.34415 * 110.11991 * 343.74351 * 10 9 7 13 13 C 1.46501 * 124.35448 * 179.57216 * 12 10 9 14 14 C 1.53949 * 113.73956 * 38.71598 * 13 12 10 15 15 N 1.47813 * 86.03610 * 222.08475 * 14 13 12 16 16 C 1.36930 * 134.45556 * 204.64607 * 15 14 13 17 17 H 1.08004 * 119.99846 * 179.87279 * 16 15 14 18 18 C 1.38811 * 120.00387 * 359.86491 * 16 15 14 19 19 N 1.31618 * 119.99727 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00381 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47139 * 59.99990 * 20 18 16 22 22 H 1.48499 * 109.47153 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.46947 * 300.00072 * 20 18 16 24 24 C 1.47585 * 91.04993 * 24.55270 * 15 14 13 25 25 C 1.46773 * 111.29884 * 359.59580 * 12 10 9 26 26 C 1.52997 * 109.47232 * 239.99801 * 2 1 3 27 27 C 1.53782 * 113.61199 * 157.49782 * 26 2 1 28 28 C 1.53787 * 87.08010 * 220.01854 * 27 26 2 29 29 C 1.53779 * 87.07940 * 25.43522 * 28 27 26 30 30 H 1.09004 * 109.47261 * 300.00019 * 1 2 3 31 31 H 1.09002 * 109.47153 * 60.00191 * 1 2 3 32 32 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 33 33 H 0.97005 * 119.99795 * 0.02562 * 6 4 2 34 34 H 1.09006 * 110.48034 * 25.35838 * 9 7 6 35 35 H 1.09004 * 110.48486 * 147.86579 * 9 7 6 36 36 H 1.08997 * 112.94578 * 170.31310 * 13 12 10 37 37 H 1.08998 * 113.77197 * 336.35193 * 14 13 12 38 38 H 1.09001 * 113.76453 * 107.74854 * 14 13 12 39 39 H 0.97005 * 120.00223 * 179.97438 * 19 18 16 40 40 H 1.09005 * 113.76421 * 221.15207 * 24 15 14 41 41 H 1.09000 * 113.77266 * 89.75192 * 24 15 14 42 42 H 1.09003 * 110.24371 * 258.01484 * 25 12 10 43 43 H 1.09001 * 110.24451 * 136.01479 * 25 12 10 44 44 H 1.08994 * 112.85073 * 288.80027 * 26 2 1 45 45 H 1.09003 * 113.61734 * 334.56602 * 27 26 2 46 46 H 1.09002 * 113.61773 * 105.47549 * 27 26 2 47 47 H 1.08997 * 113.61531 * 270.88341 * 28 27 26 48 48 H 1.08998 * 113.61379 * 139.97752 * 28 27 26 49 49 H 1.09002 * 113.61619 * 220.02072 * 29 28 27 50 50 H 1.08995 * 113.69497 * 89.12788 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.7296 -1.6965 1.1193 6 7 1.7068 -0.2499 2.4546 7 6 2.1946 -0.9408 3.6508 8 1 3.2101 -1.3072 3.5001 9 6 1.2442 -2.0929 4.0509 10 6 0.3038 -1.4659 5.0564 11 8 -0.7564 -1.9402 5.4058 12 7 0.8137 -0.3062 5.5056 13 6 0.1544 0.5632 6.4833 14 6 -0.5651 -0.2031 7.6082 15 7 -1.6572 0.7784 7.4384 16 6 -2.6525 1.2554 8.2489 17 1 -3.3448 1.9955 7.8755 18 6 -2.7718 0.7876 9.5504 19 7 -1.9278 -0.1140 10.0055 20 14 -4.1300 1.4378 10.6558 21 1 -5.4504 1.1398 10.0451 22 1 -4.0407 0.7844 11.9863 23 1 -3.9783 2.9064 10.8149 24 6 -1.2428 1.0395 6.0462 25 6 2.1157 -0.0223 4.8905 26 6 2.0400 -0.7213 -1.2492 27 6 3.4727 -0.3276 -1.6459 28 6 2.9922 -0.3573 -3.1065 29 6 1.5812 -0.0723 -2.5657 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.1487 0.5385 2.5436 34 1 0.6910 -2.4501 3.1822 35 1 1.8048 -2.9089 4.5070 36 1 0.7993 1.3655 6.8416 37 1 -0.8437 -1.2215 7.3376 38 1 -0.0626 -0.1404 8.5734 39 1 -2.0109 -0.4406 10.9152 40 1 -1.2804 2.0924 5.7668 41 1 -1.7209 0.3868 5.3157 42 1 2.9210 -0.2579 5.5863 43 1 2.1705 1.0237 4.5891 44 1 1.8759 -1.7982 -1.2128 45 1 3.7639 0.6649 -1.3022 46 1 4.2152 -1.0915 -1.4150 47 1 3.0897 -1.3350 -3.5785 48 1 3.3975 0.4504 -3.7160 49 1 0.7966 -0.6300 -3.0771 50 1 1.3539 0.9897 -2.4730 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094751749.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:06 Heat of formation + Delta-G solvation = 9.219098 kcal Electronic energy + Delta-G solvation = -29584.771270 eV Core-core repulsion = 25614.550400 eV Total energy + Delta-G solvation = -3970.220869 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.93069 -40.07779 -38.55918 -37.21865 -36.33010 -34.12167 -33.13781 -32.06401 -30.23447 -27.58195 -27.12743 -26.50622 -25.54445 -24.74827 -23.87552 -23.33835 -21.57334 -20.60984 -20.23062 -19.67039 -18.28512 -17.42150 -17.08974 -16.71948 -16.27828 -15.69716 -15.52761 -15.35795 -14.89619 -14.76961 -14.46268 -13.98508 -13.89619 -13.65721 -13.44181 -13.21561 -12.98134 -12.83741 -12.76908 -12.56795 -12.44787 -11.98247 -11.88803 -11.77069 -11.70706 -11.54566 -11.40646 -11.34897 -10.84722 -10.83336 -10.71705 -10.63044 -10.44619 -10.20893 -10.01240 -9.86708 -9.57827 -9.49887 -9.13640 -8.66284 -8.18739 -6.82404 -5.72572 -3.04778 2.42338 2.84109 2.96558 3.25346 3.42118 3.46582 3.47790 4.15989 4.23357 4.30419 4.33195 4.44709 4.50833 4.54493 4.63571 4.77425 4.84834 5.00227 5.03603 5.07472 5.23502 5.35547 5.38419 5.39685 5.40546 5.41483 5.48399 5.53350 5.59363 5.61383 5.63783 5.65583 5.71311 5.75497 5.84518 5.87017 5.96948 6.20254 6.24598 6.26645 6.49765 6.57022 6.86876 7.24098 7.28425 7.49705 7.58127 7.63126 7.99841 8.00670 8.57293 9.07759 9.74133 10.63106 11.44550 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.026111 B = 0.002252 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.083004 B =12428.276222 C =12938.926216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.101 4.101 3 H 0.097 0.903 4 C 0.521 3.479 5 O -0.535 6.535 6 N -0.722 5.722 7 C 0.134 3.866 8 H 0.113 0.887 9 C -0.166 4.166 10 C 0.512 3.488 11 O -0.510 6.510 12 N -0.609 5.609 13 C 0.099 3.901 14 C 0.153 3.847 15 N -0.605 5.605 16 C -0.221 4.221 17 H 0.079 0.921 18 C -0.008 4.008 19 N -0.919 5.919 20 Si 0.914 3.086 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.284 1.284 24 C 0.112 3.888 25 C 0.096 3.904 26 C -0.089 4.089 27 C -0.133 4.133 28 C -0.144 4.144 29 C -0.137 4.137 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.403 0.597 34 H 0.099 0.901 35 H 0.110 0.890 36 H 0.105 0.895 37 H 0.056 0.944 38 H 0.070 0.930 39 H 0.254 0.746 40 H 0.041 0.959 41 H 0.039 0.961 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.098 0.902 45 H 0.077 0.923 46 H 0.069 0.931 47 H 0.079 0.921 48 H 0.065 0.935 49 H 0.067 0.933 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.712 2.119 -23.786 27.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 H 0.115 0.885 4 C 0.308 3.692 5 O -0.411 6.411 6 N -0.374 5.374 7 C 0.029 3.971 8 H 0.131 0.869 9 C -0.208 4.208 10 C 0.299 3.701 11 O -0.385 6.385 12 N -0.345 5.345 13 C -0.004 4.004 14 C 0.027 3.973 15 N -0.331 5.331 16 C -0.349 4.349 17 H 0.097 0.903 18 C -0.205 4.205 19 N -0.566 5.566 20 Si 0.744 3.256 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.211 1.211 24 C -0.015 4.015 25 C -0.029 4.029 26 C -0.107 4.107 27 C -0.171 4.171 28 C -0.181 4.181 29 C -0.174 4.174 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.238 0.762 34 H 0.118 0.882 35 H 0.128 0.872 36 H 0.123 0.877 37 H 0.074 0.926 38 H 0.088 0.912 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.056 0.944 42 H 0.103 0.897 43 H 0.101 0.899 44 H 0.116 0.884 45 H 0.095 0.905 46 H 0.088 0.912 47 H 0.097 0.903 48 H 0.084 0.916 49 H 0.086 0.914 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 13.421 1.224 -23.289 26.907 hybrid contribution -1.038 0.686 0.745 1.450 sum 12.383 1.910 -22.543 25.791 Atomic orbital electron populations 1.21772 0.92591 1.03076 1.02849 1.21376 0.97652 1.00483 0.92749 0.88512 1.20683 0.79647 0.84498 0.84401 1.90697 1.37578 1.26020 1.86770 1.46089 1.53962 1.32215 1.05182 1.21829 0.99068 0.92180 0.84029 0.86901 1.22809 0.98624 0.99022 1.00296 1.20690 0.86299 0.81067 0.82054 1.90789 1.22351 1.65226 1.60084 1.48536 1.19709 1.22795 1.43435 1.24051 0.92486 0.93822 0.90050 1.22784 0.86278 0.93671 0.94575 1.45698 1.34307 1.46102 1.07007 1.18926 1.05788 1.18196 0.92009 0.90281 1.24805 0.99350 0.98993 0.97311 1.69819 1.37975 1.32358 1.16438 0.86177 0.81486 0.78080 0.79863 1.21173 1.21551 1.21090 1.22908 0.91329 0.97522 0.89728 1.22333 0.87236 0.99880 0.93440 1.22372 0.96255 1.00435 0.91671 1.22915 0.96770 1.01629 0.95771 1.22806 0.96800 1.01849 0.96668 1.22968 0.97098 1.00968 0.96364 0.91964 0.91203 0.91921 0.76169 0.88228 0.87206 0.87705 0.92601 0.91182 0.93587 0.94080 0.94372 0.89656 0.89917 0.88390 0.90462 0.91189 0.90260 0.91587 0.91444 0.90061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 8.89 37.16 0.33 -0.64 16 2 C -0.10 -0.72 2.47 -91.77 -0.23 -0.95 16 3 H 0.10 0.54 7.94 -51.93 -0.41 0.13 16 4 C 0.52 5.01 7.14 -10.98 -0.08 4.93 16 5 O -0.53 -6.90 15.59 5.56 0.09 -6.82 16 6 N -0.72 -6.16 5.05 -52.22 -0.26 -6.43 16 7 C 0.13 1.25 3.43 -66.30 -0.23 1.03 16 8 H 0.11 0.99 7.72 -51.93 -0.40 0.59 16 9 C -0.17 -2.00 6.58 -26.75 -0.18 -2.18 16 10 C 0.51 8.56 7.42 -10.87 -0.08 8.48 16 11 O -0.51 -11.35 14.61 5.55 0.08 -11.27 16 12 N -0.61 -9.02 3.16 -166.62 -0.53 -9.55 16 13 C 0.10 1.83 4.81 -70.14 -0.34 1.49 16 14 C 0.15 3.80 6.90 -2.84 -0.02 3.78 16 15 N -0.60 -16.21 3.70 -177.86 -0.66 -16.87 16 16 C -0.22 -6.43 10.70 -15.06 -0.16 -6.59 16 17 H 0.08 2.19 7.83 -52.48 -0.41 1.78 16 18 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 19 N -0.92 -28.17 11.39 55.49 0.63 -27.54 16 20 Si 0.91 22.67 29.55 -169.99 -5.02 17.64 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 C 0.11 2.39 8.44 -2.96 -0.03 2.36 16 25 C 0.10 0.91 6.96 -3.11 -0.02 0.89 16 26 C -0.09 -0.67 2.54 -89.81 -0.23 -0.90 16 27 C -0.13 -0.97 7.60 -25.92 -0.20 -1.17 16 28 C -0.14 -0.89 8.08 -25.92 -0.21 -1.10 16 29 C -0.14 -0.82 6.68 -25.92 -0.17 -0.99 16 30 H 0.06 0.41 7.56 -51.93 -0.39 0.01 16 31 H 0.07 0.38 7.45 -51.93 -0.39 0.00 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.40 2.91 7.99 -40.82 -0.33 2.59 16 34 H 0.10 1.27 8.09 -51.93 -0.42 0.85 16 35 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.11 1.76 8.14 -51.93 -0.42 1.34 16 37 H 0.06 1.54 5.72 -51.93 -0.30 1.25 16 38 H 0.07 1.89 7.16 -51.93 -0.37 1.52 16 39 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 40 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.04 0.87 7.25 -51.93 -0.38 0.49 16 42 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.08 0.64 8.04 -51.93 -0.42 0.22 16 44 H 0.10 0.91 7.86 -51.93 -0.41 0.50 16 45 H 0.08 0.51 7.96 -51.93 -0.41 0.10 16 46 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.08 0.42 8.09 -51.93 -0.42 0.00 16 LS Contribution 396.77 15.07 5.98 5.98 Total: -1.00 -36.38 396.77 -10.01 -46.39 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -8.39 Total: 0.32 kcal Atomic # 6 Polarization: 10.05 SS G_CDS: -1.93 Total: 8.12 kcal Atomic # 7 Polarization: -59.56 SS G_CDS: -0.82 Total: -60.37 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: 0.17 Total: -18.09 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.38 -10.01 -46.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094751749.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.613 kcal (2) G-P(sol) polarization free energy of solvation -36.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds