Wall clock time and date at job start Tue Mar 31 2020 18:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 110.34996 * 2 1 4 4 C 1.53993 * 110.30690 * 237.86247 * 2 1 3 5 5 N 1.47908 * 107.22336 * 242.20571 * 4 2 1 6 6 C 1.46897 * 111.00072 * 214.25473 * 5 4 2 7 7 C 1.50703 * 109.47306 * 176.61381 * 6 5 4 8 8 O 1.21296 * 119.99416 * 6.14417 * 7 6 5 9 9 N 1.34774 * 120.00292 * 186.13956 * 7 6 5 10 10 C 1.37094 * 119.99583 * 180.02562 * 9 7 6 11 11 H 1.07999 * 120.00525 * 0.02562 * 10 9 7 12 12 C 1.38960 * 119.99524 * 180.02562 * 10 9 7 13 13 N 1.31412 * 119.99916 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 119.99922 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47258 * 59.99878 * 14 12 10 16 16 H 1.48500 * 109.47258 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47123 * 300.00291 * 14 12 10 18 18 C 1.48811 * 105.67826 * 334.90819 * 5 4 2 19 19 C 1.54595 * 110.30780 * 122.14195 * 2 1 3 20 20 H 1.08996 * 110.72097 * 22.52215 * 19 2 1 21 21 C 1.52996 * 110.72379 * 259.40925 * 19 2 1 22 22 N 1.46505 * 109.46847 * 175.00040 * 21 19 2 23 23 C 1.34775 * 120.00226 * 180.02562 * 22 21 19 24 24 O 1.21616 * 119.99438 * 0.02562 * 23 22 21 25 25 C 1.47096 * 120.00149 * 180.02562 * 23 22 21 26 26 C 1.32613 * 124.61580 * 179.70090 * 25 23 22 27 27 C 1.51117 * 110.75618 * 179.84376 * 26 25 23 28 28 C 1.54578 * 104.90261 * 343.80512 * 27 26 25 29 29 C 1.51104 * 124.62404 * 0.02562 * 25 23 22 30 30 H 1.09002 * 109.46796 * 180.68087 * 1 2 3 31 31 H 1.08998 * 109.46925 * 300.68878 * 1 2 3 32 32 H 1.08998 * 109.46913 * 60.68855 * 1 2 3 33 33 H 1.08994 * 109.92289 * 1.65757 * 4 2 1 34 34 H 1.09009 * 109.91688 * 122.76301 * 4 2 1 35 35 H 1.08996 * 109.47542 * 296.62245 * 6 5 4 36 36 H 1.09010 * 109.46875 * 56.61739 * 6 5 4 37 37 H 0.97003 * 119.99922 * 0.02562 * 9 7 6 38 38 H 0.96997 * 119.99530 * 180.02562 * 13 12 10 39 39 H 1.08994 * 110.51834 * 280.53989 * 18 5 4 40 40 H 1.09006 * 110.69606 * 157.49055 * 18 5 4 41 41 H 1.08998 * 109.47207 * 295.00116 * 21 19 2 42 42 H 1.09002 * 109.46866 * 55.00665 * 21 19 2 43 43 H 0.96998 * 119.99776 * 0.02562 * 22 21 19 44 44 H 1.07999 * 124.62602 * 0.02562 * 26 25 23 45 45 H 1.08998 * 110.51771 * 224.85001 * 27 26 25 46 46 H 1.08996 * 110.24753 * 102.61864 * 27 26 25 47 47 H 1.08996 * 110.98401 * 266.71506 * 28 27 26 48 48 H 1.09001 * 111.01786 * 142.92404 * 28 27 26 49 49 H 1.09010 * 110.36501 * 315.44121 * 29 25 23 50 50 H 1.09003 * 110.36697 * 77.64331 * 29 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9091 1.0220 0.0000 4 6 2.0645 -0.7683 -1.2229 5 7 2.8343 -1.9234 -0.7123 6 6 3.9777 -2.2213 -1.5851 7 6 4.7837 -3.3473 -0.9905 8 8 4.3807 -3.9262 -0.0037 9 7 5.9521 -3.7112 -1.5551 10 6 6.6849 -4.7359 -1.0144 11 1 6.3258 -5.2518 -0.1362 12 6 7.8898 -5.1107 -1.5963 13 7 8.3270 -4.4825 -2.6646 14 14 8.8881 -6.5073 -0.8600 15 1 8.0804 -7.7535 -0.8730 16 1 10.1228 -6.7087 -1.6601 17 1 9.2548 -6.1698 0.5389 18 6 3.2856 -1.5347 0.6514 19 6 2.0666 -0.7714 1.2276 20 1 1.3173 -1.4683 1.6029 21 6 2.5012 0.1981 2.3286 22 7 2.8916 -0.5596 3.5202 23 6 3.3124 0.0897 4.6237 24 8 3.3675 1.3046 4.6305 25 6 3.7049 -0.6711 5.8199 26 6 4.1366 -0.1279 6.9501 27 6 4.4480 -1.1959 7.9728 28 6 3.7508 -2.4695 7.4426 29 6 3.6779 -2.1781 5.9261 30 1 -0.3633 -1.0276 0.0122 31 1 -0.3633 0.5245 0.8837 32 1 -0.3633 0.5031 -0.8961 33 1 1.2328 -1.1175 -1.8346 34 1 2.7135 -0.1213 -1.8133 35 1 3.6159 -2.5143 -2.5706 36 1 4.6051 -1.3347 -1.6773 37 1 6.2744 -3.2480 -2.3441 38 1 9.1680 -4.7444 -3.0709 39 1 4.1564 -0.8818 0.5940 40 1 3.5047 -2.4183 1.2511 41 1 3.3484 0.7882 1.9795 42 1 1.6729 0.8622 2.5756 43 1 2.8473 -1.5285 3.5149 44 1 4.2475 0.9332 7.1178 45 1 4.0450 -0.9207 8.9475 46 1 5.5247 -1.3525 8.0388 47 1 2.7530 -2.5743 7.8685 48 1 4.3529 -3.3562 7.6410 49 1 2.7509 -2.5713 5.5085 50 1 4.5373 -2.6100 5.4132 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101869003.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:04 Heat of formation + Delta-G solvation = -63.340759 kcal Electronic energy + Delta-G solvation = -29061.060363 eV Core-core repulsion = 25087.693062 eV Total energy + Delta-G solvation = -3973.367301 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.21390 -39.41369 -38.00084 -37.62319 -35.00375 -33.99834 -32.99561 -31.24936 -30.62138 -29.43292 -28.57502 -27.65683 -25.95779 -24.95073 -23.43914 -22.13803 -21.09738 -20.70876 -20.13376 -19.20357 -18.70446 -17.87671 -17.31430 -16.41691 -16.04099 -15.74235 -15.37117 -15.24326 -14.93781 -14.50255 -14.47848 -14.15527 -13.93400 -13.51163 -13.42505 -13.13301 -13.03639 -12.94914 -12.73734 -12.33407 -12.22201 -12.19031 -11.90035 -11.66777 -11.51659 -11.48798 -11.42167 -11.39079 -11.16233 -10.92441 -10.88134 -10.64112 -10.55363 -10.44316 -10.23166 -9.96713 -9.49135 -9.25756 -9.00762 -8.42469 -8.03197 -7.93421 -6.43340 -3.84245 1.23066 3.13279 3.18197 3.22860 3.24306 3.28185 3.88835 4.03801 4.23215 4.26128 4.32936 4.53220 4.62794 4.73949 4.75090 4.83492 5.03408 5.09096 5.16181 5.22539 5.24002 5.36246 5.39449 5.46209 5.50149 5.53630 5.55825 5.57999 5.64299 5.69102 5.73127 5.74756 5.89269 5.93353 5.93876 5.97538 6.01096 6.10185 6.15470 6.25687 6.28558 6.33775 6.39564 6.48917 7.16909 7.26028 7.45929 7.53060 8.04037 8.15885 8.59841 9.16011 9.52524 10.04068 10.74381 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007675 B = 0.003285 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3647.496918 B = 8522.770627 C =11530.981900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.093 4.093 3 H 0.076 0.924 4 C 0.037 3.963 5 N -0.493 5.493 6 C 0.037 3.963 7 C 0.443 3.557 8 O -0.580 6.580 9 N -0.563 5.563 10 C -0.300 4.300 11 H 0.103 0.897 12 C 0.023 3.977 13 N -0.902 5.902 14 Si 0.930 3.070 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.274 1.274 18 C 0.046 3.954 19 C -0.104 4.104 20 H 0.091 0.909 21 C 0.131 3.869 22 N -0.720 5.720 23 C 0.565 3.435 24 O -0.549 6.549 25 C -0.192 4.192 26 C -0.077 4.077 27 C -0.107 4.107 28 C -0.122 4.122 29 C -0.094 4.094 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.079 0.921 34 H 0.042 0.958 35 H 0.090 0.910 36 H 0.047 0.953 37 H 0.392 0.608 38 H 0.272 0.728 39 H 0.038 0.962 40 H 0.105 0.895 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.405 0.595 44 H 0.137 0.863 45 H 0.078 0.922 46 H 0.086 0.914 47 H 0.073 0.927 48 H 0.078 0.922 49 H 0.074 0.926 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.822 8.852 12.282 19.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.113 4.113 3 H 0.094 0.906 4 C -0.092 4.092 5 N -0.216 5.216 6 C -0.095 4.095 7 C 0.228 3.772 8 O -0.464 6.464 9 N -0.200 5.200 10 C -0.429 4.429 11 H 0.120 0.880 12 C -0.179 4.179 13 N -0.543 5.543 14 Si 0.757 3.243 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.199 1.199 18 C -0.082 4.082 19 C -0.123 4.123 20 H 0.109 0.891 21 C 0.007 3.993 22 N -0.371 5.371 23 C 0.354 3.646 24 O -0.429 6.429 25 C -0.195 4.195 26 C -0.096 4.096 27 C -0.144 4.144 28 C -0.160 4.160 29 C -0.132 4.132 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.098 0.902 34 H 0.061 0.939 35 H 0.108 0.892 36 H 0.065 0.935 37 H 0.225 0.775 38 H 0.082 0.918 39 H 0.057 0.943 40 H 0.123 0.877 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.241 0.759 44 H 0.154 0.846 45 H 0.097 0.903 46 H 0.104 0.896 47 H 0.091 0.909 48 H 0.096 0.904 49 H 0.093 0.907 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.188 8.799 12.791 19.738 hybrid contribution 1.391 -0.066 -0.529 1.490 sum -10.797 8.733 12.262 18.525 Atomic orbital electron populations 1.21826 0.94215 1.02271 1.01452 1.21936 0.96402 0.98944 0.93984 0.90554 1.23018 0.98256 0.91427 0.96467 1.64580 1.20492 1.34637 1.01928 1.22088 0.92083 0.97815 0.97533 1.19699 0.83160 0.87228 0.87067 1.90470 1.70871 1.57285 1.27801 1.41862 1.18145 1.32120 1.27832 1.19641 1.01127 1.10322 1.11842 0.87964 1.25264 0.97485 0.99014 0.96138 1.69604 1.22343 1.41674 1.20670 0.85925 0.78642 0.80905 0.78791 1.19858 1.20964 1.19930 1.23424 0.94281 0.99558 0.90901 1.22480 0.98799 0.96886 0.94153 0.89087 1.21385 1.00061 0.93913 0.83918 1.45918 1.67057 1.10931 1.13216 1.17986 0.76821 0.87034 0.82783 1.90776 1.54665 1.13696 1.83712 1.21852 1.06208 0.96486 0.94924 1.24029 0.92072 0.99898 0.93621 1.21484 1.01529 0.93355 0.98055 1.22420 1.01142 0.97668 0.94758 1.21290 1.03036 0.91442 0.97387 0.91993 0.92752 0.92612 0.90239 0.93942 0.89168 0.93531 0.77495 0.91798 0.94337 0.87672 0.91430 0.91329 0.75944 0.84565 0.90300 0.89601 0.90868 0.90353 0.90700 0.89722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 8.89 37.16 0.33 -0.93 16 2 C -0.09 -1.00 3.16 -89.26 -0.28 -1.28 16 3 H 0.08 0.77 7.85 -51.93 -0.41 0.36 16 4 C 0.04 0.46 6.35 -2.75 -0.02 0.44 16 5 N -0.49 -8.05 5.11 -231.64 -1.18 -9.24 16 6 C 0.04 0.65 5.31 -4.98 -0.03 0.63 16 7 C 0.44 10.30 7.42 -10.99 -0.08 10.22 16 8 O -0.58 -15.09 13.89 5.54 0.08 -15.01 16 9 N -0.56 -14.17 5.29 -10.96 -0.06 -14.22 16 10 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 11 H 0.10 2.93 7.16 -52.49 -0.38 2.56 16 12 C 0.02 0.60 5.50 -17.46 -0.10 0.51 16 13 N -0.90 -24.46 13.05 55.50 0.72 -23.74 16 14 Si 0.93 20.88 29.55 -169.99 -5.02 15.85 16 15 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 16 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 17 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 18 C 0.05 0.72 4.97 -1.74 -0.01 0.71 16 19 C -0.10 -1.23 2.61 -88.76 -0.23 -1.47 16 20 H 0.09 1.07 7.86 -51.93 -0.41 0.66 16 21 C 0.13 1.56 5.00 -4.04 -0.02 1.54 16 22 N -0.72 -8.73 5.47 -61.49 -0.34 -9.07 16 23 C 0.57 7.77 7.79 -12.67 -0.10 7.67 16 24 O -0.55 -9.33 16.77 5.26 0.09 -9.25 16 25 C -0.19 -2.16 6.09 -102.73 -0.63 -2.79 16 26 C -0.08 -0.76 10.43 -36.01 -0.38 -1.14 16 27 C -0.11 -0.79 6.80 -26.85 -0.18 -0.98 16 28 C -0.12 -0.91 7.17 -25.07 -0.18 -1.09 16 29 C -0.09 -0.87 6.02 -26.85 -0.16 -1.03 16 30 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.94 7.68 -51.93 -0.40 0.54 16 34 H 0.04 0.51 7.68 -51.92 -0.40 0.11 16 35 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 36 H 0.05 0.77 7.99 -51.92 -0.41 0.36 16 37 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 38 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 39 H 0.04 0.64 7.82 -51.93 -0.41 0.23 16 40 H 0.11 1.94 6.46 -51.93 -0.34 1.60 16 41 H 0.07 0.89 8.00 -51.93 -0.42 0.47 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.41 4.42 7.48 -40.82 -0.31 4.11 16 44 H 0.14 1.35 8.03 -52.49 -0.42 0.93 16 45 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.07 0.63 7.83 -51.92 -0.41 0.22 16 50 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 403.11 15.07 6.07 6.07 Total: -1.00 -32.54 403.11 -10.22 -42.76 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: -8.38 Total: 13.21 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: -2.20 Total: 2.62 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: -0.85 Total: -56.26 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: 0.17 Total: -24.25 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.54 -10.22 -42.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101869003.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.578 kcal (2) G-P(sol) polarization free energy of solvation -32.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds